RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13500
(396 letters)
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 187 bits (478), Expect = 2e-54
Identities = 73/345 (21%), Positives = 111/345 (32%), Gaps = 90/345 (26%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPIL-EGNVFRYKFLAD 116
GDT+ V + N + T+IHWHG+ Q+ T DG VT+CPI +G Y++ A
Sbjct: 71 ANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR 130
Query: 117 AAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE 176
GT ++HSH Q +G++G + I P + YD V +TD+Y+ D
Sbjct: 131 QYGTSWYHSHFSAQYGNGVVGTIQINGPAS-------LPYDIDLGVFPITDYYYRAADD- 182
Query: 177 RWPGLRLHDVGQLPDTFLINGKGSYP------------VKGERY---------------- 208
++ D LING P G+R+
Sbjct: 183 -LVHFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVS 241
Query: 209 --------------------------------DFVIETSKAVSSYWIHIKGLGPC---ED 233
D VI+ S+A +YW ++ G
Sbjct: 242 LVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGS 301
Query: 234 NKPFQLGVLKYDGSLFQKPPSSNPGYKGYPVNRIFNRPNADCNPDNTSNVCISHLNNKDF 293
P + Y G+ P P D +T +V
Sbjct: 302 LNPHPAAIFHYAGAPGGLPTDEGT-------------PPVDHQCLDTLDV---RPVVPRS 345
Query: 294 VKPVLLAKKPDVFNRPNADCNPDNTSNVCI-SHLNNKDFVKPVLL 337
V K+PD D + N D+ KP++
Sbjct: 346 VPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIID 390
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 182 bits (463), Expect = 1e-52
Identities = 81/327 (24%), Positives = 118/327 (36%), Gaps = 94/327 (28%)
Query: 58 VCKGDTIVVDLHNKMP----GRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
GD +++ + + +ST+IHWHG Q T DG + QCPI G+ F Y F
Sbjct: 38 GNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 114 -LADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT 172
+ D AGT+++HSH Q DG+ G ++ P DP++ Y+ DN V+ + DWYH
Sbjct: 98 QVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTA 155
Query: 173 TSD-ERWPGLRLHDVGQLPDTFLINGKGSYP------------VKGERY----------- 208
R+PG D LINGKG P KG+RY
Sbjct: 156 AKLGPRFPG--------GADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNP 207
Query: 209 -------------------------------------DFVIETSKAVSSYWIHIK-GLGP 230
FV++ ++AV +YWI G
Sbjct: 208 NHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQAVDNYWIRANPNFGN 267
Query: 231 CEDNKPFQLGVLKYDGSLFQKPPSSNPGY--------------KGYPVNRIFNRPNADCN 276
+ +L+YDG+ +P ++ P + N
Sbjct: 268 VGFDGGINSAILRYDGAPAVEPTTNQTTSVKPLNEVDLHPLVSTPVPGAPSSGGVDKAIN 327
Query: 277 PDNTSNVCISHLNNKDFV---KPVLLA 300
N +N FV PVLL
Sbjct: 328 MAFNFNGSNFFINGASFVPPTVPVLLQ 354
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 180 bits (460), Expect = 2e-52
Identities = 68/295 (23%), Positives = 105/295 (35%), Gaps = 79/295 (26%)
Query: 58 VCKGDTIVVDLHNKMPG----RSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
GD + N++ T+IHWHG Q+ T DG +TQCPI+ GN F Y F
Sbjct: 39 GNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNF 98
Query: 114 -LADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT 172
+ AGTY++HSH Q DG+ G ++ P DP++ Y+ D+ + ++ + DWYH
Sbjct: 99 NVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN--DPDANLYDVDDDTTIITLADWYH-V 155
Query: 173 TSDERWPGLRLHDVGQLPDTFLINGKGSYP-------------VKGERY----------- 208
+ E G + D+ LI+G G G+RY
Sbjct: 156 LAKEMGAGGAI-----TADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDP 210
Query: 209 -------------------------------------DFVIETSKAVSSYWIHIKGLGPC 231
FV+ ++ V +YWI
Sbjct: 211 NYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGG 270
Query: 232 ED-NKPFQLGVLKYDGSLFQKPPSSNPGYKGYPVN----RIFNRPNADCNPDNTS 281
E + +L+YDG+ P + + +R NP
Sbjct: 271 EGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGG 325
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 182 bits (463), Expect = 3e-52
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 7/146 (4%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
GD++VV+L NK+ IHWHG+ QR TP DG ++QC I G F Y F D
Sbjct: 38 ANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDN 97
Query: 118 AGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDER 177
GT+F+H H G Q+ G+ G+LI+ P + YD +L++DW+H + ++
Sbjct: 98 PGTFFYHGHLGMQRSAGLYGSLIVDPP---QGKKEPFHYDGE-INLLLSDWWH-QSIHKQ 152
Query: 178 WPGLRLHDVGQL--PDTFLINGKGSY 201
GL + + P T L+NG+G +
Sbjct: 153 EVGLSSKPIRWIGEPQTILLNGRGQF 178
Score = 41.5 bits (98), Expect = 3e-04
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 205 GERYDFVIETS-KAVSSYWIHIKGLGPCEDNKPFQLGVLKYDGSLFQKPPSSNP 257
GE Y +I T +YW+ + + P L +L Y + K P+S P
Sbjct: 259 GESYSVLITTDQNPSENYWVSVGTRARHPNT-PPGLTLLNYLPNSVSKLPTSPP 311
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 179 bits (457), Expect = 7e-52
Identities = 69/270 (25%), Positives = 103/270 (38%), Gaps = 80/270 (29%)
Query: 58 VCKGDTIVVDLHNKMP----GRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
K D +++ N + R T+IHWHGL QR T DG V QCPI G+ F YKF
Sbjct: 38 GGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKF 97
Query: 114 -LADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT 172
A AGT+++HSH G Q DG+ G ++I DP++ Y+ D+ + ++ + DWYH
Sbjct: 98 TPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN--DPHAALYDEDDENTIITLADWYHIP 155
Query: 173 TSDERWPGLRLHDVGQLPDTFLINGKGSYP------------VKGERY------------ 208
+ PD LINGKG Y +G++Y
Sbjct: 156 APSIQGAA--------QPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPN 207
Query: 209 ------------------------------------DFVIETSKAVSSYWIHIKGLGPCE 232
FV++ ++ V +YWI +
Sbjct: 208 WQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRN 267
Query: 233 DNKP-----FQLGVLKYDGSLFQKPPSSNP 257
+L+Y G+ P +S
Sbjct: 268 GLAGTFANGVNSAILRYAGAANADPTTSAN 297
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 181 bits (460), Expect = 9e-52
Identities = 84/373 (22%), Positives = 126/373 (33%), Gaps = 98/373 (26%)
Query: 8 RACGNCTSKGVCKGD-TIVVDLHNKMP-GRSTTIHWHGLTQRLTPHMDGVP--------- 56
+C N + C G+ +I + ++ P G + +TP DG
Sbjct: 37 ASCANSATSRSCWGEYSIDTNWYDVTPTGVTREYWLSVENSTITP--DGYTRSAMTFNGT 94
Query: 57 ------MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFR 110
+ GD +++ + N + T+IHWHG+ Q + DGVP VTQCPI G+
Sbjct: 95 VPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLT 154
Query: 111 YKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYH 170
YKF GT ++HSH Q DG+ G LII P T+D YD V+ + DW H
Sbjct: 155 YKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-------YDEDVGVIFLQDWAH 207
Query: 171 NTTSDERWPGLRLHDVGQLPDTFLINGKGSYP--------------------VKGERY-- 208
+ E W RL + L+NG ++ V+G +Y
Sbjct: 208 E-SVFEIWDTARLGA-PPALENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRL 265
Query: 209 -------------------------DFV---------------------IETSKAVSSYW 222
D V +E + A +YW
Sbjct: 266 RLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANAAADNYW 325
Query: 223 IHIKGLGPC--EDNKPFQLGVLKYDGSLFQKPPSSNPGYKGYPVNRIFNRPNADCNPDNT 280
I C + G+L+YD S P S +G + D
Sbjct: 326 IRGNWGTTCSTNNEAANATGILRYDSSSIANPTSVGTTPRGTCEDEPVASLVPHLALDVG 385
Query: 281 SNVCISHLNNKDF 293
+ + F
Sbjct: 386 GYSLVDEQVSSAF 398
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 176 bits (449), Expect = 1e-50
Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 72/267 (26%)
Query: 58 VCKGDTIVVDLHNKMPG----RSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
D +++ +++ R+T+IHWHG Q T MDG V QCPI+ F Y F
Sbjct: 59 GNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF 118
Query: 114 LA-DAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT 172
+ AGTY++HSH Q DG+ G ++ P DP+ Y+ D+ S V+ + DWYH+
Sbjct: 119 VVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN--DPHLSLYDVDDASTVITIADWYHSL 176
Query: 173 TSDERWPGLRLHDVGQLPDTFLINGKGSYP-------------VKGERY----------- 208
++ + PDT LING G G+RY
Sbjct: 177 STVLFPNPNK---APPAPDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFP 233
Query: 209 -------------------------------------DFVIETSKAVSSYWIHIKGLGPC 231
V+E ++AV +YWI
Sbjct: 234 NYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAVGNYWIRANPSNGR 293
Query: 232 ED-NKPFQLGVLKYDGSLFQKPPSSNP 257
+ +Y G+ +P +S
Sbjct: 294 NGFTGGINSAIFRYQGAAVAEPTTSQN 320
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 174 bits (444), Expect = 8e-50
Identities = 59/262 (22%), Positives = 92/262 (35%), Gaps = 72/262 (27%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V KGD + + L N M +T++H+HGL Q T MDGVP +TQCPI G+ Y F D
Sbjct: 38 VNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDY 97
Query: 118 -AGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE 176
GTY++HSH Q DG+ G II+ Y+YD + +++WYH+ +
Sbjct: 98 NVGTYWYHSHTDGQYEDGMKGLFIIKDDSFP------YDYDE-ELSLSLSEWYHDL-VTD 149
Query: 177 RWPGLRLHDVGQ----LPDTFLINGKGSY------------------------------- 201
+P ++N +
Sbjct: 150 LTKSFMSVYNPTGAEPIPQNLIVNNTMNLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHE 209
Query: 202 ---------PVK-----------GERYDFVIETSKAVS-SYWIHIKGLGPCEDNKPFQL- 239
+ +RY ++ T ++ I K D P L
Sbjct: 210 MTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQ 269
Query: 240 ----GVLKYDGSLFQKPPSSNP 257
+ Y+ + P+ N
Sbjct: 270 LNATSYMVYNKTA--ALPTQNY 289
Score = 149 bits (379), Expect = 2e-40
Identities = 49/199 (24%), Positives = 73/199 (36%), Gaps = 56/199 (28%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRST 77
V KGD + + L N M +T++H+
Sbjct: 38 VNKGDRVQIYLTNGMNNTNTSMHF------------------------------------ 61
Query: 78 TIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA-AGTYFWHSHDGFQKMDGII 136
HGL Q T MDGVP +TQCPI G+ Y F D GTY++HSH Q DG+
Sbjct: 62 ----HGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMK 117
Query: 137 GNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQ----LPDT 192
G II+ Y+YD + +++WYH+ + +P
Sbjct: 118 GLFIIKDDSFP------YDYDE-ELSLSLSEWYHD-LVTDLTKSFMSVYNPTGAEPIPQN 169
Query: 193 FLINGKGSYPVK---GERY 208
++N + + Y
Sbjct: 170 LIVNNTMNLTWEVQPDTTY 188
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 162 bits (411), Expect = 6e-47
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V +GD + V++ N TIHWHG+ QR T DGVP TQ I G+ F YKF A+
Sbjct: 38 VMEGDDVTVNVTNMTT-LPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEP 96
Query: 118 AGTYFWHSHDGFQK---MDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTS 174
AGT ++H H + M G+ G LI+ P+ P + D ++++++DW + +
Sbjct: 97 AGTMWYHCHVNVNEHVTMRGMWGPLIVE-PKNPLPIEKTVTKD---YILMLSDWVSSWAN 152
Query: 175 DERWPGLRLHDVGQLPDTFLINGKGSYPV------KGERY 208
G+ G + D + IN K KG+
Sbjct: 153 KPGEGGIP----GDVFDYYTINAKSFPETQPIRVKKGDVI 188
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 150 bits (381), Expect = 2e-42
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V +GD ++V++ N TIHWHG+ Q+ T DGVP VTQ PI G+ + YKF AD
Sbjct: 39 VQEGDDVIVNVTNNTS-LPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADR 97
Query: 118 AGTYFWHSHDGFQK---MDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTS 174
GT ++H H + + G+ G LI+ P+ P + D +++++ W
Sbjct: 98 IGTLWYHCHVNVNEHVGVRGMWGPLIVD-PKQPLPIEKRVTKD---VIMMMSTWESAVAD 153
Query: 175 DERWPGLRLHDVGQLPDTFLINGKG-----SYPVK-GERYDF-VIETSKAVSSYWIHIKG 227
G ++ D F +N K VK G+ + +H G
Sbjct: 154 KYGEGGTPMNV----ADYFSVNAKSFPLTQPLRVKKGDVVKIRFF--GAGGGIHAMHSHG 207
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 110 bits (277), Expect = 4e-27
Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLA-- 115
V DT+ + L N++P T +HWHGL ++P +D I G + Y+F
Sbjct: 51 VRPRDTVRLTLENRLP-EPTNLHWHGL--PISPKVDDP----FLEIPPGESWTYEFTVPK 103
Query: 116 DAAGTYFWHSHD----GFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHN 171
+ AGT+++H H Q G++G L++ + P + H++++ D
Sbjct: 104 ELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPE-LREAEE---HLLVLKDLALQ 159
Query: 172 TTSDERWPGLRLHDVGQLPDTFLINGKGS--YPVKGERYDF-VIETSKAVSSYWIHIKGL 228
+ + G+ D L+NG + ++ S A Y + +
Sbjct: 160 GGRPAPHTPMDWMN-GKEGDLVLVNGALRPTLVAQKATLRLRLLNASNA-RYYRLAL--- 214
Query: 229 GPCEDNKPFQLGVLKYDGSLFQKP 252
+ P ++ DG ++P
Sbjct: 215 ----QDHPLY--LIAADGGFLEEP 232
Score = 29.0 bits (65), Expect = 3.0
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 12/109 (11%)
Query: 23 TIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIHWH 82
T + L M I+ V + + T+ V H H
Sbjct: 322 TRRLVLTEDMMAARFFINGQ------VFDHRRVDLKGQAQTVEVWEVENQGDMDHPFHLH 375
Query: 83 GLTQRLTPHMDGVPMVTQCP-----ILEGNVFRYKFLADAAGTYFWHSH 126
++ + G P + + G V R G +H H
Sbjct: 376 VHPFQVL-SVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCH 423
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 110 bits (276), Expect = 6e-27
Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 25/204 (12%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LAD 116
+ +G + + L NK+ T +HWHG + H D P I G + Y F + +
Sbjct: 42 LRRGQRVDMTLKNKLT-EPTIVHWHGF--DVNWHNDAHP---SFAITPGESYNYSFDVVN 95
Query: 117 AAGTYFWHSH----DGFQKMDGIIGNLIIRQPRTSDPNSRY-YEYDNPSHVVLVTDWYHN 171
AGTY +H H Q G +G +I+ D S ++Y ++++D
Sbjct: 96 RAGTYLYHPHPHGLTAKQFYMGQLGLVIVE-----DSGSDLGFKYGVNDLPLVISDRRFI 150
Query: 172 TTSDERWPGLRLHDVGQLPDTFLINGKGS--YPVKGERYDF-VIETSKAVSSYWIHIKGL 228
+ P G L + L+NG + + G Y ++ S A Y + I
Sbjct: 151 GGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLSGGSYRLRLVNGSNAR-LYMLSIVKK 209
Query: 229 GPCEDNKPFQLGVLKYDGSLFQKP 252
D P + ++ D +P
Sbjct: 210 NG--DVVPMR--LIAVDQGFLARP 229
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 97.9 bits (244), Expect = 2e-23
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 28/141 (19%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGT 120
GD + + N TIH+HG+ + MDG P + I G F Y+F A GT
Sbjct: 73 GDALRIHFTNAGA-HPHTIHFHGVHR---ATMDGTPGIGAGSIAPGQSFTYEFDATPFGT 128
Query: 121 YFWHSH---DGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDER 177
+ +H H G+ G I+ P+ P + V+++ +
Sbjct: 129 HLYHCHQSPLAPHIAKGLYGGFIVE-PKEGRP------PADDEMVMVMNGYN-------- 173
Query: 178 WPGLRLHDVGQLPDTFLINGK 198
D G + + +NG
Sbjct: 174 ------TDGGDDNEFYSVNGL 188
Score = 36.3 bits (84), Expect = 0.012
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 12/125 (9%)
Query: 24 IVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRST-TIHWH 82
+V+ ++ ++ + MD V + + + + L N + + H H
Sbjct: 165 MVMVMNGYNTDGGDDNEFYSVNGLPFHFMDFPVKVKQHELVRIHLINVLEYDPINSFHIH 224
Query: 83 GLTQRLTPHMDGVP-------MVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGI 135
G + ++Q G + G + +H+H G
Sbjct: 225 GNFFHYY-PTGTMLTPSEYTDTISQVQ---GQRGILELRFPYPGKFMFHAHKTEFAELGW 280
Query: 136 IGNLI 140
+G
Sbjct: 281 MGFFE 285
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 100 bits (250), Expect = 3e-23
Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 23/203 (11%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LAD 116
+ +G + VD++N++ TT+HWHGL + +DG P Q I G +
Sbjct: 52 LQRGKAVTVDIYNQLT-EETTLHWHGL--EVPGEVDGGP---QGIIPPGGKRSVTLNVDQ 105
Query: 117 AAGTYFWHSHD----GFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT 172
A T ++H H G Q G+ G ++I ++ V+V D +
Sbjct: 106 PAATCWFHPHQHGKTGRQVAMGLAGLVVIE-DDEILKLMLPKQWGIDDVPVIVQDKKFSA 164
Query: 173 TSDERWPGLRLHD-VGQLPDTFLINGKGS--YPVKGERYDFVIETSKAVSSYWIHIKGLG 229
+ + VG DT L NG + + S
Sbjct: 165 DGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFAT---- 220
Query: 230 PCEDNKPFQLGVLKYDGSLFQKP 252
DN+P V+ DG L +P
Sbjct: 221 --SDNRPLY--VIASDGGLLPEP 239
Score = 40.3 bits (94), Expect = 0.001
Identities = 18/116 (15%), Positives = 29/116 (25%), Gaps = 10/116 (8%)
Query: 21 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCK-GDTIVVDLHNKMPGRSTTI 79
G ++++ G H M+ G +
Sbjct: 358 GHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPF 417
Query: 80 HWHGLTQRLTPHMDGVPMVTQCP-----ILEGNV----FRYKFLADAAGTYFWHSH 126
H HG R+ P + +EGNV ++ A Y H H
Sbjct: 418 HIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCH 473
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 98.9 bits (246), Expect = 8e-23
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFL--A 115
V +GD + + + NK+ +TTIHWHG+ + P DG P PIL G Y+F
Sbjct: 86 VFEGDKLEILVKNKLK-EATTIHWHGV--PVPPDQDGSP---HDPILAGEERIYRFEIPQ 139
Query: 116 DAAGTYFWHSHD----GFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHN 171
D+AGTY++H H Q G+ G +I+ + D S E ++++D +
Sbjct: 140 DSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKK--DALSHLKEK-----DLMISDLRLD 192
Query: 172 TTSDERWPGLRLHDVGQLPDTFLINGKGSYPVK-GERY 208
+ L G+ + LING+ +K
Sbjct: 193 ENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNE 230
Score = 35.7 bits (82), Expect = 0.025
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 51 HMDGVPMVCK-GDTIVVDLHNKMPGRSTTIHWHGLT-QRLTPHMDGVPMVTQCP------ 102
+ + + K G + NK H HG + ++ ++G +
Sbjct: 381 DLKRIDLSSKLGVVEDWIVINKSHM-DHPFHIHGTQFELISSKLNGKVQKAEFRALRDTI 439
Query: 103 -ILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQ 143
+ R + D G +H H + G++GNL +++
Sbjct: 440 NVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE 481
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 98.5 bits (245), Expect = 1e-22
Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 24/203 (11%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAA 118
+G VV N ++H HG DG + G+ Y + +A
Sbjct: 75 RGVETVVRFINNAE-APNSVHLHGS--FSRAAFDGWA---EDITEPGSFKDYYYPNRQSA 128
Query: 119 GTYFWHSH----DGFQKMDGIIGNLIIRQPRTSDPN--SRYYEYDNPSHVVLVTDWYHNT 172
T ++H H G G ++ P N S Y E+D P +++T +
Sbjct: 129 RTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYGEFDIP---MILTSKQYTA 185
Query: 173 TSDERWPGLRLHDVGQLPDTFLINGKGS--YPVKGERYDF-VIETSKAVSSYWIHIKGLG 229
+ L+ D +NG+ V+ +Y F ++ + + S+ ++
Sbjct: 186 NGNLVTTNGELN--SFWGDVIHVNGQPWPFKNVEPRKYRFRFLDAAVS-RSFGLYFADTD 242
Query: 230 PCEDNKPFQLGVLKYDGSLFQKP 252
+ PF+ V+ D L + P
Sbjct: 243 AIDTRLPFK--VIASDSGLLEHP 263
Score = 28.8 bits (64), Expect = 3.9
Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 21/121 (17%)
Query: 27 DLHNKMPGRSTTIHWHGLTQRLTPHMDGVPM----------VCKGDTIVVDLHNKMPGRS 76
D+ P +T + T ++GV V G +L N G +
Sbjct: 338 DVPFPSPTTNTPRQFRFGRTGPTWTINGVAFADVQNRLLANVPVGTVERWELINAGNGWT 397
Query: 77 TTIHWHGLTQRLTPHMDGVPMVTQCPILEG-----------NVFRYKFLADAAGTYFWHS 125
IH H + ++ G T P G V A G Y +H
Sbjct: 398 HPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRRETVVVEAHYAPFPGVYMFHC 457
Query: 126 H 126
H
Sbjct: 458 H 458
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 93.8 bits (232), Expect = 6e-21
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 35/259 (13%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKG-DTIVVDLHNKMPGRS 76
V +G + + N++P + + + L P P G + +
Sbjct: 69 VRRGQRVRIAWTNRIP-KGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAW 127
Query: 77 TTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAAGTYFWHSHD----GFQK 131
+ H HG + DG + G+ ++ A +++H H +
Sbjct: 128 SVTHLHGA--QTGGGNDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNV 182
Query: 132 MDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGLRLHD------ 185
M G+ G ++R + + +L+ D +T D R G LH
Sbjct: 183 MAGLYGTYLVRDDEEDALGLPSGDRE---IPLLIADRNLDTDEDGRLNGRLLHKTVIVQQ 239
Query: 186 ----------VGQLPDTFLINGKG--SYPVKGERYDFVIETSKAVSSYWIHIKGLGPCED 233
+ +NG+ V Y + + Y + +
Sbjct: 240 SNPETGKPVSIPFFGPYTTVNGRIWPYADVDDGWYRLRLVNASNARIYNLVLIDEDDRPV 299
Query: 234 NKPFQLGVLKYDGSLFQKP 252
+ DG L +P
Sbjct: 300 PGVVH--QIGSDGGLLPRP 316
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 86.7 bits (214), Expect = 3e-19
Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 34/208 (16%)
Query: 45 TQRLTPHMDGVP----MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPM--- 97
++ G+ GD + V NK + +IH G+ + + +G
Sbjct: 47 KEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAH-KPLSIHAQGI--KYSKFSEGASYSDH 103
Query: 98 -----VTQCPILEGNVFRYKFLAD----------AAGTYFWHSHDG--FQKMDGIIGNLI 140
+ G + Y+++ T+ ++S+ G+IG L+
Sbjct: 104 TLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLL 163
Query: 141 IRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQLPDTFLINGKGS 200
I + T + ++ HV++ + + + ++ + + I
Sbjct: 164 ICKKGTLTEDGTQKMFEK-QHVLMFAVFDESKSWNQTSSLMYTVNGYVNGTMPDITVC-- 220
Query: 201 YPVKGERYDF-VIETSKAVSSYWIHIKG 227
+ + +I S + IH G
Sbjct: 221 ---AHDHISWHLIGMSSGPELFSIHFNG 245
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 8/122 (6%)
Query: 23 TIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHN-KMPGRSTTIHW 81
++ + ++ + T VC D I L +IH+
Sbjct: 184 VLMFAVFDESKSWNQTSSLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHF 243
Query: 82 HGLTQRLTPH-MDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLI 140
+G H + + +V+ G + S G+ +
Sbjct: 244 NGQVLEQNHHKISAITLVS------ATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYID 297
Query: 141 IR 142
I+
Sbjct: 298 IK 299
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 82.7 bits (204), Expect = 2e-17
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LAD 116
V KGD + + N++ + ++ GL ++ + G P + + +
Sbjct: 54 VWKGDDVKLIYSNRLT-ENVSMTVAGL--QVPGPLMGGP---ARMMSPNADWAPVLPIRQ 107
Query: 117 AAGTYFWHSHD----GFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT 172
A T ++H++ Q +G+ G ++ S Y V++ D +
Sbjct: 108 NAATLWYHANTPNRTAQQVYNGLAGMWLVE-DEVSKSLPIPNHYGVDDFPVIIQDKRLDN 166
Query: 173 TSDERWPGLRLHDVGQLPDTFLINGKGS--YPVKGERY 208
+ G + DT L+NG S V
Sbjct: 167 FGTPEYN--EPGSGGFVGDTLLVNGVQSPYVEVSRGWV 202
Score = 31.5 bits (71), Expect = 0.50
Identities = 10/107 (9%), Positives = 32/107 (29%), Gaps = 12/107 (11%)
Query: 29 HNKMPGRSTTIHWHGLTQRLTPHMDGVPM-VCKGDTIVVDLHNKMPGRSTTIHWHGLTQR 87
+ + R ++ ++ + + +G + P H G+ +
Sbjct: 321 GSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADEP---QAFHIEGVMFQ 377
Query: 88 LTPHMDGVPMVTQCP-----ILEGNV---FRYKFLADAAGTYFWHSH 126
+ +P ++G V + + A ++++S
Sbjct: 378 IRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQ 424
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 81.7 bits (201), Expect = 5e-17
Identities = 48/257 (18%), Positives = 80/257 (31%), Gaps = 54/257 (21%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRST 77
V + + + V N +P H L T H + P T
Sbjct: 62 VKRNENVYVKWMNNLPST------HFLPIDHTIHHSDSQH-------------EEPEVKT 102
Query: 78 TIHWHGLTQRLTPHMDGVP--MVTQCPILEGNVFRYKF----LADAAGTYFWHSHD---- 127
+H HG DG P ++ G F+ + ++H H
Sbjct: 103 VVHLHGGVTP--DDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALT 160
Query: 128 GFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVG 187
G++G II P+ EYD +L+TD N +P +
Sbjct: 161 RLNVYAGLVGAYIIHDPKEKRLKLPSDEYD---VPLLITDRTINEDGSLFYPSAPENPSP 217
Query: 188 QLP----------DTFLINGKGS--YPVKGERYDFVIETSKAVSSYWIHIKGLGPCEDNK 235
LP +T L+NGK V+ +Y F + + +Y + + ++
Sbjct: 218 SLPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSL------DNGG 271
Query: 236 PFQLGVLKYDGSLFQKP 252
F + DG L +
Sbjct: 272 DFI--QIGSDGGLLPRS 286
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 79.2 bits (195), Expect = 3e-16
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 24/146 (16%)
Query: 61 GDTIVVDLHNKMPGR-STTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAG 119
GD I +L N + I H + G+ + F A G
Sbjct: 67 GDEIEFNLSNHPSSKMPHNIDLHAV-------TGPGGGAESSFTAPGHTSTFNFKALNPG 119
Query: 120 TYFWHSHDG---FQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE 176
Y +H +G+ G +++ +P D + ++ D+Y T +
Sbjct: 120 LYIYHCATAPVGMHIANGMYGLILV------EPKEGLAPVD-REYYLVQGDFY--TKGEF 170
Query: 177 RWPGLRLHDVGQL----PDTFLINGK 198
GL+ D+ + D + NG
Sbjct: 171 GEAGLQPFDMAKAIDEDADYVVFNGS 196
Score = 33.7 bits (77), Expect = 0.090
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 50 PHMDGVPMVCK-GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPM----VTQCPIL 104
D + K G+T+ + + N P ++ H G +++G + V I
Sbjct: 199 STTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLIP 257
Query: 105 EGNVFRYKFLADAAGTYFWHSHDGF-QKMDGIIGNLIIRQPRTSDP 149
G +F + GT+ H F G + L + P
Sbjct: 258 AGGAAIVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDDHSI 303
Score = 32.2 bits (73), Expect = 0.30
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVP---------MVCKGDTIVVDL 68
G+T+ + + N P ++ H G +++G ++ G +V+
Sbjct: 208 AKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLIPAGGAAIVEF 266
Query: 69 HNKMPGRSTTIHWHGLTQRLTPHMDGVPMVT 99
++PG + H + + + V
Sbjct: 267 KVEVPGT-FILVDHSIFRAFNKGALAMLKVE 296
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 77.0 bits (188), Expect = 2e-15
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRL----TPHMDGVPMVTQCPILEGNVFRYKFLA 115
GDT+++ N+ R I+ HG+T GV + PIL G +F+YK+
Sbjct: 458 VGDTLLIIFKNQAS-RPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTV 516
Query: 116 DA----------AGTYFWHSH--DGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVV 163
T ++ S G+IG L+I + D D +V+
Sbjct: 517 TVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSDKR-NVI 575
Query: 164 LVTDWYHNTTSDERW 178
L + + N +
Sbjct: 576 LFSVFDENRSWYLTE 590
Score = 72.0 bits (175), Expect = 9e-14
Identities = 30/215 (13%), Positives = 58/215 (26%), Gaps = 34/215 (15%)
Query: 45 TQRLTPHMDGVP----MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRL----TPHMDGVP 96
+ P G+ DT+V+ L N ++H G++ + D
Sbjct: 62 IAKPRPPWMGLLGPTIQAEVYDTVVITLKNMAS-HPVSLHAVGVSYWKASEGAEYDDQTS 120
Query: 97 MVTQC--PILEGNVFRYKFLAD----------AAGTYFWHSH--DGFQKMDGIIGNLIIR 142
+ + G Y + TY + SH G+IG L++
Sbjct: 121 QREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVC 180
Query: 143 QPRTSDPNSRYYEYD---NPSHVVLVTDWYHNTTSDERWPGLRLHDVGQLPDTFLINGK- 198
+ + + + W+ T + P +NG
Sbjct: 181 REGSLAKEKTQTLHKFILLFAVFDEGKSWHSETKNSLMQDR-DAASARAWPKMHTVNGYV 239
Query: 199 -----GSYPVKGERYDF-VIETSKAVSSYWIHIKG 227
G + + VI + I ++G
Sbjct: 240 NRSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEG 274
Score = 45.0 bits (105), Expect = 4e-05
Identities = 14/153 (9%), Positives = 36/153 (23%), Gaps = 7/153 (4%)
Query: 29 HNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRS-TTIHWHGLTQR 87
H + + + G+ C ++ + +I G T
Sbjct: 220 DRDAASARAWPKMHTVNGYVNRSLPGLIG-CHRKSVYWHVIGMGTTPEVHSIFLEGHTFL 278
Query: 88 LTPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTS 147
+ H ++ + L G + H + DG+ + +
Sbjct: 279 VRNHRQASLEISP-----ITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEE 333
Query: 148 DPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPG 180
+ + +TD + +
Sbjct: 334 PQLRMKNNEEAEDYDDDLTDSEMDVVRFDDDNS 366
Score = 38.5 bits (88), Expect = 0.004
Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 57 MVCKGDTIVVDLHN-KMPGRSTTIHWHGLTQRLTP-HMDGVPMVTQCPILEGNVFRYKFL 114
VC + + + ++ + G T + + D + + +
Sbjct: 629 SVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFP------FSGETVFMS 682
Query: 115 ADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDN 158
+ G + H+ + G+ L + + + Y++
Sbjct: 683 MENPGLWILGCHNSDFRNRGMTALLKVSSCDKNTGDYYEDSYED 726
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 73.5 bits (179), Expect = 3e-14
Identities = 40/226 (17%), Positives = 63/226 (27%), Gaps = 49/226 (21%)
Query: 45 TQRLTPHMDGVP----MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPM--- 97
T P G GD + V L N R T H HG+ +G
Sbjct: 82 TTIEKPVWLGFLGPIIKAETGDKVYVHLKNLAS-RPYTFHSHGI--TYYKEHEGAIYPDN 138
Query: 98 -----VTQCPILEGNVFRYKFLADAAG----------TYFWHSHDGF--QKMDGIIGNLI 140
+ G + Y LA T +HSH G+IG LI
Sbjct: 139 TTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLI 198
Query: 141 IRQPRTSDPNS-RYYEYDNPSHVVLVTDWYHNT-----------TSDERWPGLRLHDVGQ 188
I + + D ++ + + VV+ + N S+ D Q
Sbjct: 199 ICKKDSLDKEKEKHIDRE---FVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQQ 255
Query: 189 LPDTFLINGKGSYPV------KGERYDF-VIETSKAVSSYWIHIKG 227
+ +NG + +R + + V + G
Sbjct: 256 SNRMYSVNGYTFGSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHG 301
Score = 60.4 bits (145), Expect = 5e-10
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 27/129 (20%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVT------------QCPILEGN 107
GDTI V HNK +I G+ R + +G +
Sbjct: 457 VGDTIRVTFHNKGA-YPLSIEPIGV--RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTE 513
Query: 108 VFRYKFLADAAG----------TYFWHSHDGFQK--MDGIIGNLIIRQPRTSDPNSRYYE 155
F Y++ ++S K G+IG + I + + N R +
Sbjct: 514 TFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKD 573
Query: 156 YDNPSHVVL 164
D ++
Sbjct: 574 VDKEFYLFP 582
Score = 50.7 bits (120), Expect = 6e-07
Identities = 25/201 (12%), Positives = 45/201 (22%), Gaps = 76/201 (37%)
Query: 21 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIH 80
GD + + N R +IH HG+
Sbjct: 817 GDKVKIIFKNMAT-RPYSIHAHGVQ----------------------------------- 840
Query: 81 WHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLAD----------AAGTYFWHSH--DG 128
T P L G Y + A + ++S
Sbjct: 841 --------------TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQV 886
Query: 129 FQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT-----------TSDER 177
G+IG LI+ + + + + +L + N +
Sbjct: 887 KDLYSGLIGPLIVCRRPYLKVFNPRRKLE---FALLFLVFDENESWYLDDNIKTYSDHPE 943
Query: 178 WPGLRLHDVGQLPDTFLINGK 198
+ + ING+
Sbjct: 944 KVNKDDEEFIESNKMHAINGR 964
Score = 46.1 bits (108), Expect = 1e-05
Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 15/212 (7%)
Query: 27 DLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHN-KMPGRSTTIHWHGLT 85
+ + + H + + + G+ M CKGD++V L + I++ G T
Sbjct: 606 QVDKEDEDFQESNKMHSMNGFMYGNQPGLTM-CKGDSVVWYLFSAGNEADVHGIYFSGNT 664
Query: 86 QRLTP-HMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQP 144
D + D GT+ G+ + Q
Sbjct: 665 YLWRGERRDTANLFP------QTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQC 718
Query: 145 RTSDPNSRYYEYDNPSHVV---LVTDWYHNTTSDERWPGLRLHDVGQLPDTFLINGKGSY 201
R +S +Y + ++ + D+ ++ L+ +V GS
Sbjct: 719 RRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSK 778
Query: 202 PVKG---ERYDFVIETSKAVSSYWIHIKGLGP 230
K + D + H+ LGP
Sbjct: 779 YKKVVYRQYTDSTFRVPVERKAEEEHLGILGP 810
Score = 39.2 bits (90), Expect = 0.002
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 32 MPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRST-TIHWHGLTQRLTP 90
+ H + R+ ++ G+ + GD + L T+H+HG + +
Sbjct: 949 DEEFIESNKMHAINGRMFGNLQGLT-MHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKH 1007
Query: 91 HMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDP 149
GV I G + G + H H G+ + Q +
Sbjct: 1008 --RGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKS 1064
Score = 37.2 bits (85), Expect = 0.009
Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 9/162 (5%)
Query: 41 WHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPG-RSTTIHWHGLTQRLTPHMDGVPMVT 99
+ + + G+ +C D + L +HG Q LT + +
Sbjct: 259 MYSVNGYTFGSLSGLS-MCAEDRVKWYLFGMGNEVDVHAAFFHG--QALTNKNYRIDTIN 315
Query: 100 QCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNP 159
P +F +A G + + G+ +++ S
Sbjct: 316 LFP---ATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVR 372
Query: 160 SHVVLVT--DWYHNTTSDERWPGLRLHDVGQLPDTFLINGKG 199
+ + W + + + + L G F G
Sbjct: 373 HYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTT 414
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 68.3 bits (167), Expect = 5e-13
Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 26/148 (17%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPH--MDGVPMVTQCPILEGNVFRYKFLADAA 118
GDT+ V+ N ST H H G + F A
Sbjct: 77 GDTVEVEFSN--NPSSTVPHNVDF------HAATGQGGGAAATFTAPGRTSTFSFKALQP 128
Query: 119 GTYFWHSH---DGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSD 175
G Y +H G +G+ G +++ +P + D ++ D+Y T
Sbjct: 129 GLYIYHCAVAPVGMHIANGMYGLILV------EPKEGLPKVD-KEFYIVQGDFY--TKGK 179
Query: 176 ERWPGLRLHDVGQL----PDTFLINGKG 199
+ GL+ D+ + P+ + NG
Sbjct: 180 KGAQGLQPFDMDKAVAEQPEYVVFNGHV 207
Score = 29.0 bits (65), Expect = 2.4
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 27 DLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCK-GDTIVVDLHNKMPGRSTTIHWHGLT 85
D+ + + + ++G LT + K G+T+ + + N P ++ H G
Sbjct: 189 DMDKAVAEQPEYVVFNGHVGALTGD---NALKAKAGETVRMYVGNGGPNLVSSFHVIGEI 245
Query: 86 QRLTPHMDGVPM----VTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMD-GIIGNLI 140
+++G + V + G +F D G Y H F+ + G +G L
Sbjct: 246 FDKV-YVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLK 304
Query: 141 IRQPRTSD 148
+ +
Sbjct: 305 VEGAENPE 312
Score = 27.1 bits (60), Expect = 9.4
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVP---------MVCKGDTIVVDL 68
G+T+ + + N P ++ H G +++G +V G + +V+
Sbjct: 218 AKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAIVEF 276
Query: 69 HNKMPGRSTTIHWHGLTQRLTPHMDGVPMVT 99
+PG T+ H + + G V
Sbjct: 277 KVDIPGNY-TLVDHSIFRAFNKGALGQLKVE 306
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 67.7 bits (165), Expect = 6e-13
Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 71/211 (33%)
Query: 21 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIH 80
GDT+ ++ N M ++H HGL DG
Sbjct: 43 GDTLHIEFTNTMD-VRASLHVHGL--DYEISSDGTA------------------------ 75
Query: 81 WHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLA-------------DAAGTYFWHSHD 127
+ + + G Y + +AG + +H H
Sbjct: 76 -----------------MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHV 118
Query: 128 GFQKM------DGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGL 181
+ +G+ G +I+R + H ++ D N P
Sbjct: 119 VGTEHGTGGIRNGLYGPVIVR-----RKGDVLPDAT---HTIVFNDMTINNRKPHTGPDF 170
Query: 182 RLHDVGQLPDTFLINGKGSYPVKGERYDFVI 212
++ + +G+ + + +
Sbjct: 171 EATVGDRVEIVMITHGEYYHTFHMHGHRWAD 201
Score = 31.1 bits (70), Expect = 0.56
Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 9/140 (6%)
Query: 24 IVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIHWHG 83
IV + +P + TI ++ +T G V + T H HG
Sbjct: 137 IVRRKGDVLPDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHG 196
Query: 84 LTQRLTP------HMDGVPMVTQCPILEGNVFRYKFLADAA---GTYFWHSHDGFQKMDG 134
D ++ + F ++ +A G + +H H G
Sbjct: 197 HRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMG 256
Query: 135 IIGNLIIRQPRTSDPNSRYY 154
++G ++++P + P +
Sbjct: 257 MVGLFLVKKPDGTIPGYEPH 276
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 68.8 bits (168), Expect = 6e-13
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 25/151 (16%)
Query: 61 GDTIVVDLHNKMPGR-STTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAG 119
GDT+ + L N ++ +HG T G TQ G F A G
Sbjct: 202 GDTVELHLKNHKDSLMVHSVDFHGATG-----PGGAAAFTQ--TDPGEETVVTFKALIPG 254
Query: 120 TYFWHSH---DGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE 176
Y +H +G+ G L++ +P P Y V+ + Y +
Sbjct: 255 IYVYHCATPSVPTHITNGMYGLLLV-EPEGGLPQVDREFY------VMQGEIYTVKSFGT 307
Query: 177 RWPGLRLHDVGQL----PDTFLINGK-GSYP 202
G + D +L P+ FL NG GS
Sbjct: 308 --SGEQEMDYEKLINEKPEYFLFNGSVGSLT 336
Score = 43.3 bits (102), Expect = 1e-04
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V +G+T+ V+L N H + +D + + + F+A
Sbjct: 59 VHEGETVQVNLVN------GEGAQHDV------VVDQYAARSAIVNGKNASSTFSFVASK 106
Query: 118 AGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVV 163
G + ++ + G+ GN+ + ++ S + +
Sbjct: 107 VGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADL 152
Score = 32.9 bits (75), Expect = 0.16
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 27 DLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCK-GDTIVVDLHNKMPGRSTTIHWHGLT 85
D + + ++G LT P+ G+T+ + P +++ H G
Sbjct: 314 DYEKLINEKPEYFLFNGSVGSLTRSH---PLYASVGETVRIFFGVGGPNFTSSFHVIGEI 370
Query: 86 --------QRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIG 137
++P + GV V+ P G F D AG Y H + G++G
Sbjct: 371 FDHVYSLGSVVSPPLIGVQTVSVPP---GGATIVDFKIDRAGRYILVDHALSRLEHGLVG 427
Query: 138 NLIIRQPRTSD 148
L + P+
Sbjct: 428 FLNVDGPKNDS 438
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 65.9 bits (160), Expect = 4e-12
Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 67/199 (33%)
Query: 21 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIH 80
GDT+ ++ N M ++H HGL DG
Sbjct: 84 GDTLHIEFTNTMD-VRASLHVHGL--DYEISSDGTA------------------------ 116
Query: 81 WHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLA-------------DAAGTYFWHSHD 127
+ + + G Y + +AG + +H H
Sbjct: 117 -----------------MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHV 159
Query: 128 GFQKMD------GIIGNLIIRQPRTSDPNS---RYYEYDNPSHVVLVTDWYHNTTSDERW 178
+ G+ G +I+R+ P++ + ++ T T +R
Sbjct: 160 VGTEHGTGGIRNGLYGPVIVRRKGDVLPDATHTIVFNDMTINNRKPHTGPDFEATVGDRV 219
Query: 179 PGLRLHDVGQLPDTFLING 197
+ + G+ TF ++G
Sbjct: 220 E-IVMITHGEYYHTFHMHG 237
Score = 33.9 bits (77), Expect = 0.081
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 11/121 (9%)
Query: 39 IHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPH-MDGVPM 97
+ + R GD + + + T H HG + P
Sbjct: 195 FNDMTINNRKPHTGPDFEA-TVGDRVEIVMIT-HGEYYHTFHMHGHRWADNRTGILTGPD 252
Query: 98 VTQCP-----ILEGNVFRYKFLADAA---GTYFWHSHDGFQKMDGIIGNLIIRQPRTSDP 149
+ F ++ +A G + +H H G++G ++++P + P
Sbjct: 253 DPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 312
Query: 150 N 150
Sbjct: 313 G 313
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 63.0 bits (153), Expect = 4e-11
Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 21/157 (13%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGT 120
D + + L N T H + + + G +F A G
Sbjct: 78 NDYVELRLIN----PDTNTLLHNI--DFHAATGALGGGALTQVNPGEETTLRFKATKPGV 131
Query: 121 YFWHSHDG----FQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE 176
+ +H + G+ G +++ + + V D+Y
Sbjct: 132 FVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTYDKIYYVGEQDFYVPKDEAG 191
Query: 177 R-----WPGLRLHDV-----GQLPDTFLINGK-GSYP 202
PG D P + NG G+
Sbjct: 192 NYKKYETPGEAYEDAVKAMRTLTPTHIVFNGAVGALT 228
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 59.8 bits (145), Expect = 4e-10
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 25/159 (15%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGT 120
GD + + L N +T H + + + G +F AD +GT
Sbjct: 72 GDYVQLTLVNP----ATNAMPHNV--DFHGATGALGGAKLTNVNPGEQATLRFKADRSGT 125
Query: 121 YFWHSHDG----FQKMDGIIGNLIIRQPR--TSDPNSRYYEYDNPSHVVLVTDWYHNTTS 174
+ +H + + G+ G L++ PR DP + YD ++ + D Y
Sbjct: 126 FVYHCAPEGMVPWHVVSGMSGTLMV-LPRDGLKDPQGKPLHYDR-AYTIGEFDLYIPKGP 183
Query: 175 DERW-----PGLRLHDVGQL-----PDTFLINGK-GSYP 202
D ++ D Q+ P + NGK G+
Sbjct: 184 DGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALT 222
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 56.4 bits (136), Expect = 5e-09
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 26/160 (16%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGT 120
GD + + L N H + + I G +F A AG
Sbjct: 71 GDYVELTLIN----PPENTMPHNI--DFHAATGALGGGGLTLINPGEKVVLRFKATRAGA 124
Query: 121 YFWHSHDG-----FQKMDGIIGNLIIRQPR--TSDPNSRYYEYDNPSHVVLVTDWYHNTT 173
+ +H G + + G+ G +++ PR D + YD + + +D Y
Sbjct: 125 FVYHCAPGGPMIPWHVVSGMAGCIMV-LPRDGLKDHEGKPVRYD-TVYYIGESDHYIPKD 182
Query: 174 SDER-----WPGLRLHDV-----GQLPDTFLINGK-GSYP 202
D P D+ +P + NG G+
Sbjct: 183 EDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALT 222
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 54.0 bits (129), Expect = 4e-08
Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 29/163 (17%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILE--------GNVFRYK 112
D I V N R ++H HGL +G P + Y
Sbjct: 76 DDVIQVRFKNLAS-RPYSLHAHGL--SYEKSSEGKTYEDDSPEWFKEDNAIQPNKTYTYV 132
Query: 113 FLAD----------AAGTYFWHSH--DGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPS 160
+ A A + ++S G+IG L+I + T D +
Sbjct: 133 WHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETNMPVDMREF 192
Query: 161 HVVLVT-----DWYHNTTSDERWPGLRLHDVGQLPDTFLINGK 198
++ + WY++ W +V + ING
Sbjct: 193 VLLFMVFDEKKSWYYDKKPTRSWRR-ASSEVKNSHEFHAINGM 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 7e-06
Identities = 53/411 (12%), Positives = 115/411 (27%), Gaps = 139/411 (33%)
Query: 46 QRLTPH-------MDG------VPMVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHM 92
L P + G VC + KM + I W L +P
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSY----KVQCKMDFK---IFWLNLKNCNSPET 197
Query: 93 DGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGN------LII----R 142
+ ++ N + +D + H ++ ++ + L++ +
Sbjct: 198 VLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 143 QPRTS---DPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQLPDTFLINGKG 199
+ + + + +L+ TT + Q+ D FL
Sbjct: 255 NAKAWNAFNLSCK----------ILL------TTRFK-----------QVTD-FLSAATT 286
Query: 200 SYPVKGERYD-FVIETSKAVSSYWIHIK--GLGPCEDNK--PFQLGVLKYDGSLFQKPPS 254
++ + K++ ++ + L P E P +L ++ + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSII---AESIRDGLA 342
Query: 255 SNPGYKGYPVNRIFNRPNADCNPDNTSNVCISHLNNKDFVKP-VLLAKKPDVFNRPNADC 313
+ +K +++ ++ L ++ K L+ VF P+A
Sbjct: 343 TWDNWKHVNCDKL----------TTIIESSLNVLEPAEYRKMFDRLS----VF-PPSAHI 387
Query: 314 NP---------DNTSNVCISHLNNKDFVKPVLLSKKPDVRILLAPGFY------------ 352
P D + + +N K L+ K+P + P Y
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 353 -------NYKLPEVFQP--------DTY-----PRHV------GKWCLFQQ 377
+Y +P+ F D Y H+ + LF+
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Score = 31.0 bits (69), Expect = 0.96
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 41/114 (35%)
Query: 22 DTIVVDLHNKM----PGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKM----- 72
+V LH + +TI + L ++ LH +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY----------ALHRSIVDHYN 454
Query: 73 ------------PGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFL 114
P + H + H+ + +FR FL
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSH-----IGHHLKNIEH-----PERMTLFRMVFL 498
Score = 30.2 bits (67), Expect = 1.5
Identities = 41/284 (14%), Positives = 71/284 (25%), Gaps = 73/284 (25%)
Query: 124 HSHDGFQ--KMDGIIGNLI--IRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWP 179
H H F+ + +++ + + + + D P ++ + H S +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVS 62
Query: 180 GLRLHDVGQLPDTFLINGKGSYPVKGERYDFVIETSKAVSSY-W----IHIKGLGPCEDN 234
G L T L + FV E + +Y + I + P
Sbjct: 63 GTLR-----LFWTLLSKQEEMV------QKFVEEVLRI--NYKFLMSPIKTEQRQPSMMT 109
Query: 235 KPF--QLGVLKYDGSLFQKPPSSNPGYKGYPVNRIFNRPNADCNPDNTSNVCISHLNNKD 292
+ + Q L D +F K Y V+R+ P + L
Sbjct: 110 RMYIEQRDRLYNDNQVFAK----------YNVSRL--------QPYLKLRQALLELRPAK 151
Query: 293 FV---------KPVLLAKKPDVFNRPNADCNPD-----------NTSNVCISHLNN--KD 330
V K + DV C D N+ + L
Sbjct: 152 NVLIDGVLGSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 331 FVKPVLLSKKPDVRILLAPGFYNYKLPEVFQPDTYPRHVGKWCL 374
I L +L + + Y CL
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CL 247
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 33.6 bits (76), Expect = 0.13
Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 35/139 (25%)
Query: 21 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIH 80
D I+V N+ R + + ++ P + P + T
Sbjct: 206 EDNIMVTFRNQAS-RPYSFYSSLISYEEDQRQGAEPRK----------NFVKPNETKTYF 254
Query: 81 WHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQK--MDGIIGN 138
W + HM C + + S +K G+IG
Sbjct: 255 WK-----VQHHMAPTKDEFDC-----------------KAWAYSSDVDLEKDVHSGLIGP 292
Query: 139 LIIRQPRTSDPNSRYYEYD 157
L++ T +P
Sbjct: 293 LLVCHTNTLNPAHGRQVTV 311
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 29.4 bits (65), Expect = 1.4
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 58 VCKGDTIVVDLHNK---MPGRSTTIHWHGLTQRLTPH-----MDGVPMVTQC-PILEGNV 108
+ G T+ V N H +T++ P+ +D + T P+ +
Sbjct: 65 IPAGATVDVTFINTNKGFG------HSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGK 118
Query: 109 FRYK--FLADAAGTYFWHSHDGFQKMDGIIGNLIIR 142
F Y AGTY++ G+ G ++++
Sbjct: 119 FGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVVK 154
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 30.0 bits (67), Expect = 1.8
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 120 TYFWHSHDG---FQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE 176
T+ ++ ++ + + RY + P+H+++ + +++ T+
Sbjct: 252 TFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAIS 311
Query: 177 RWPGLRLHDVGQLPDTFLINGKGSYPVKG 205
WPG G++ D G+G+ P G
Sbjct: 312 PWPGAATGSGGEIRDEGAT-GRGAKPKAG 339
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 29.2 bits (65), Expect = 2.9
Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 30/144 (20%)
Query: 195 INGKGSYPVKGERYDFVIETSKAVSSYWIHIKGLGPCEDNKPFQLGVLKYDGSLFQKPPS 254
I+G G K ++ + +++K + G+L +
Sbjct: 269 IDGNGWLRAKT---------AEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDG 319
Query: 255 SNPGYKGYPVNRIFNRPNADCNPDNTSNVCIS------------HLNNKDFVKPVLLAKK 302
R + NV ++ V L +
Sbjct: 320 -----MDLKNAYGQRRSSL-MTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQ 373
Query: 303 PDVFNRPNAD-CNPDNTSNVCISH 325
++ N D N+ NV + +
Sbjct: 374 T--YDANNGDGIEFGNSQNVMVFN 395
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 27.5 bits (61), Expect = 3.7
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 16/71 (22%)
Query: 58 VCKGDTIVVDLHNKMPGR-STTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLAD 116
V KGD + V + NK P +I G+ + + G F AD
Sbjct: 42 VKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKA---------------GETKTISFTAD 86
Query: 117 AAGTYFWHSHD 127
AG +
Sbjct: 87 KAGAFTIWCQL 97
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 28.3 bits (64), Expect = 5.1
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 15/49 (30%)
Query: 89 TPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIG 137
T +D P++ L + D Q +D +
Sbjct: 94 TSVLDRSPVI----ALAAQSESHDIF----PN------DTHQCLD-SVA 127
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 27.9 bits (62), Expect = 7.1
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 356 LPEVFQP---DTYPRHVGKWCLFQQELMVPTPRGFPRCGDFLN 395
LPE+ + T GKW L + P RGF R L
Sbjct: 97 LPELLREAGYQTL--MAGKWHLGLKPEQTPHARGFERSFSLLP 137
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 27.9 bits (63), Expect = 7.5
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 16/49 (32%)
Query: 89 TPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIG 137
T + +G P+V L G V R Q MD +
Sbjct: 94 TANSEGDPVV----ALGGAVKR-----ADKAK------QVHQSMD-TVA 126
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 27.6 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 16/49 (32%)
Query: 89 TPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIG 137
DG+PMV + G V A GT D FQ+ D ++G
Sbjct: 166 DAFADGIPMV----VFTGQVPT-----SAIGT------DAFQEAD-VVG 198
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 27.5 bits (62), Expect = 9.3
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 18/59 (30%)
Query: 83 GLTQRLTP----HMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIG 137
G +T + PM+ +L G+ R + +++MD +
Sbjct: 83 GFLNGVTSLAHATTNCFPMI----LLSGSSER-----EIVDL----QQGDYEEMD-QMN 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.461
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,441,784
Number of extensions: 386362
Number of successful extensions: 998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 111
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)