RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13500
(396 letters)
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 131
Score = 94.7 bits (235), Expect = 3e-24
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 58 VCKGDTIVVDLHNKMP----GRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
K D +++ N + R T+IHWHGL QR T DG V QCPI G+ F YKF
Sbjct: 38 GGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKF 97
Query: 114 -LADAAGTYFWHSHDGFQKMDGIIGNLIIRQP 144
A AGT+++HSH G Q DG+ G ++I
Sbjct: 98 TPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDD 129
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 90.5 bits (224), Expect = 1e-22
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 58 VCKGDTIVVDLHNKMP----GRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
KGD +++ + + +ST+IHWHG Q T DG V QCPI G+ F Y F
Sbjct: 38 GKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDF 97
Query: 114 -LADAAGTYFWHSHDGFQKMDGIIGNLIIRQPR 145
+ D AGT+++HSH Q DG+ G ++ P+
Sbjct: 98 HVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPK 130
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 90.5 bits (224), Expect = 1e-22
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 58 VCKGDTIVVDLHNKMPG----RSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
D +++ +++ R+T+IHWHG Q T MDG V QCPI+ F Y F
Sbjct: 38 GNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF 97
Query: 114 LA-DAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPN 150
+ AGTY++HSH Q DG+ G ++ P +DP+
Sbjct: 98 VVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDP--NDPH 133
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 84.0 bits (207), Expect = 2e-20
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 57 MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLAD 116
GD++VV+L NK+ IHWHG+ QR TP DG ++QC I G F Y F D
Sbjct: 37 RANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVD 96
Query: 117 AAGTYFWHSHDGFQKMDGIIGNLIIRQPR 145
GT+F+H H G Q+ G+ G+LI+ P+
Sbjct: 97 NPGTFFYHGHLGMQRSAGLYGSLIVDPPQ 125
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 72.8 bits (178), Expect = 8e-16
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGL----TQRLTPHMDGVPMVTQC--PILEGNVFRY 111
GD + V NK + +IH G+ + D + + + G + Y
Sbjct: 64 AEVGDIMKVHFKNKAH-KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTY 122
Query: 112 KFLAD----------AAGTYFWHSHDGFQK--MDGIIGNLIIRQPRTSDPNSRYYEYD 157
+++ T+ ++S+ + G+IG L+I + T + ++
Sbjct: 123 EWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQKMFE 180
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 70.9 bits (173), Expect = 5e-15
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 23/117 (19%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQ----------RLTPHMDGVPMVTQCPILEGN 107
GDTI V HNK +I G+ + +
Sbjct: 90 AEVGDTIRVTFHNKGA-YPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTE 148
Query: 108 VFRYKFLADAAG----------TYFWHSHDGFQK--MDGIIGNLIIRQPRTSDPNSR 152
F Y++ ++S K G+IG + I + + N R
Sbjct: 149 TFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGR 205
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 68.2 bits (166), Expect = 2e-14
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILE-GNVFRYKFLAD 116
GDT+ V + N + T+IHWHG+ Q+ T DG VT+CPI G Y++ A
Sbjct: 71 ANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR 130
Query: 117 AAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDP 149
GT ++HSH Q +G++G + I S P
Sbjct: 131 QYGTSWYHSHFSAQYGNGVVGTIQIN-GPASLP 162
>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 68.6 bits (167), Expect = 3e-14
Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 57 MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQR----LTPHMDGVP--MVTQCPILEGNVFR 110
GD + V L N R T H HG+T + D + G +
Sbjct: 79 KAETGDKVYVHLKNLAS-RPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYT 137
Query: 111 YKFLAD----------AAGTYFWHSHDGF--QKMDGIIGNLIIRQPRTSD 148
Y LA T +HSH G+IG LII + + D
Sbjct: 138 YMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLD 187
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId:
920]}
Length = 153
Score = 62.2 bits (150), Expect = 2e-12
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 58 VCKGDTIVVDLHNKMPG--RSTTIHWHG--LTQRLTPHMDGVPMVTQCPILEGNVFRYKF 113
+ G T+ V N G S I G +G F
Sbjct: 64 IPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNF 123
Query: 114 -LADAAGTYFWHSHDGFQKMDGIIGNLIIR 142
AGTY++ G G ++++
Sbjct: 124 TWHPTAGTYYYVCQIPGHAATGQFGKIVVK 153
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 159
Score = 61.7 bits (149), Expect = 4e-12
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V +GD + + L N H + + + G +F AD
Sbjct: 69 VHEGDYVQLTLVNPAT----NAMPHNVEFH--GATGALGGAKLTNVNPGEQATLRFKADR 122
Query: 118 AGTYFWHSHD----GFQKMDGIIGNLIIRQPR-TSDP 149
+GT+ +H + + G+ G L++ DP
Sbjct: 123 SGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDP 159
>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 181
Score = 60.6 bits (146), Expect = 1e-11
Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 27/135 (20%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRST 77
V + + + V N + + D ++ P T
Sbjct: 61 VKRNENVYVKWMNNL-------------------PSTHFLPIDHTIHHSDSQHEEPEVKT 101
Query: 78 TIHWHGLTQRLTPHMDGVPMVTQCPILEG---NVFRYKFLAD-AAGTYFWHSH----DGF 129
+H HG ++ G Y + ++H H
Sbjct: 102 VVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRL 161
Query: 130 QKMDGIIGNLIIRQP 144
G++G II P
Sbjct: 162 NVYAGLVGAYIIHDP 176
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 59.3 bits (143), Expect = 2e-11
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V +GDT+ V+ N ++ H + G G + F A
Sbjct: 62 VREGDTVEVEFSNNP----SSTVPHNVDFHAATGQGG--GAAATFTAPGRTSTFSFKALQ 115
Query: 118 AGTYFWHSHD---GFQKMDGIIGNLIIRQPRTSDP 149
G Y +H G +G+ G +++ P+ P
Sbjct: 116 PGLYIYHCAVAPVGMHIANGMYGLILVE-PKEGLP 149
>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 58.1 bits (140), Expect = 1e-10
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 22/98 (22%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLAD- 116
GD + + N R +IH HG+ T P L G Y +
Sbjct: 90 ADVGDKVKIIFKNMAT-RPYSIHAHGVQ---------TESSTVTPTLPGETLTYVWKIPE 139
Query: 117 ---------AAGTYFWHSHDGFQK--MDGIIGNLIIRQ 143
A + ++S K G+IG LI+ +
Sbjct: 140 RSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCR 177
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 56.7 bits (136), Expect = 2e-10
Identities = 12/85 (14%), Positives = 18/85 (21%), Gaps = 1/85 (1%)
Query: 57 MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLAD 116
+ GD + L H GV I G +
Sbjct: 63 TMHVGDEVNWYLMGMG-NEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPR 121
Query: 117 AAGTYFWHSHDGFQKMDGIIGNLII 141
G + H H G+ +
Sbjct: 122 TPGIWLLHCHVTDHIHAGMETTYTV 146
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 56.3 bits (135), Expect = 2e-10
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 56 PMVCKGDTIVVDLHNKM-PGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFL 114
+ + + + + L N +H+HG Q L + + P+L G+ +
Sbjct: 54 LRMYEQEWVRLHLLNLGGSRDIHVVHFHG--QTLLENGTQQHQLGVWPLLPGSFKTLEMK 111
Query: 115 ADAAGTYFWHSHDGFQKMDGIIGNLII 141
A G + + G + G+ +I
Sbjct: 112 ASKPGWWLLDTEVGEIQRAGMQTPFLI 138
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 54.8 bits (131), Expect = 8e-10
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V +GD + + L N H + G +T I G +F A
Sbjct: 66 VHEGDYVELTLIN----PPENTMPHNIDFHAATGALGGGGLT--LINPGEKVVLRFKATR 119
Query: 118 AGTYFWHSH-----DGFQKMDGIIGNLII 141
AG + +H + + G+ G +++
Sbjct: 120 AGAFVYHCAPGGPMIPWHVVSGMAGCIMV 148
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 53.2 bits (127), Expect = 2e-09
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 57 MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LA 115
+ +G + VD++N++ TT+HWHG + +DG P Q I G +
Sbjct: 49 KLQRGKAVTVDIYNQLT-EETTLHWHG--LEVPGEVDGGP---QGIIPPGGKRSVTLNVD 102
Query: 116 DAAGTYFWHSHD----GFQKMDGIIGNLIIRQP 144
A T ++H H G Q G+ G ++I
Sbjct: 103 QPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDD 135
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 157
Score = 52.0 bits (124), Expect = 8e-09
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
V + D + + L N T H + G +TQ G +F A
Sbjct: 68 VHENDYVELRLIN----PDTNTLLHNIDFHAATGALGGGALTQVN--PGEETTLRFKATK 121
Query: 118 AGTYFWHSHD----GFQKMDGIIGNLIIR 142
G + +H + G+ G +++
Sbjct: 122 PGVFVYHCAPEGMVPWHVTSGMNGAIMVL 150
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 145
Score = 51.7 bits (123), Expect = 9e-09
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
+CKGD++V L + HG+ ++ + D
Sbjct: 63 MCKGDSVVWYLFSAG----NEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDT 118
Query: 118 AGTYFWHSHDGFQKMDGIIGNLIIRQ 143
GT+ G+ + Q
Sbjct: 119 EGTFNVECLTTDHYTGGMKQKYTVNQ 144
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 146
Score = 50.6 bits (120), Expect = 2e-08
Identities = 8/86 (9%), Positives = 22/86 (25%), Gaps = 4/86 (4%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA 117
+C D + L + H + + + +F +A
Sbjct: 64 MCAEDRVKWYLFGMG----NEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQN 119
Query: 118 AGTYFWHSHDGFQKMDGIIGNLIIRQ 143
G + + G+ +++
Sbjct: 120 PGEWMLSCQNLNHLKAGLQAFFQVQE 145
>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 116
Score = 47.0 bits (111), Expect = 2e-07
Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 6/81 (7%)
Query: 58 VCKGDTIVVDLHNKMPGR-STTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLAD 116
VC D I L G +IH++G ++ ++
Sbjct: 39 VCAHDHISWHLIGMSSGPELFSIHFNG-----QVLEQNHHKISAITLVSATSTTANMTVS 93
Query: 117 AAGTYFWHSHDGFQKMDGIIG 137
G + S G+
Sbjct: 94 PEGRWTIASLIPRHFQAGMQA 114
Score = 34.3 bits (78), Expect = 0.005
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 18 VCKGDTIVVDLHNKMPGR-STTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRS 76
VC D I L G +IH++G H + + ++ GR
Sbjct: 39 VCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGR- 97
Query: 77 TTIHWHGLTQR 87
TI
Sbjct: 98 WTIASLIPRHF 108
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 170
Score = 47.4 bits (112), Expect = 4e-07
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 54/164 (32%)
Query: 148 DPNSRYYEYDNPSHVVLVTDWYH-------------------------NTTSDERWP--- 179
DP++ Y+ DN S V+ +TDWYH +T +
Sbjct: 1 DPHASRYDVDNESTVITLTDWYHTAARLGPRFPLGADATLINGLGRSASTPTAALAVINV 60
Query: 180 ------GLRLHDVGQLP--------DTFLINGKGSYPVK-----------GERYDFVIET 214
RL + P + + +RY FV+
Sbjct: 61 QHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNA 120
Query: 215 SKAVSSYWIHIK-GLGPCEDNKPFQLGVLKYDGSLFQKPPSSNP 257
++ V +YWI G +L+Y G+ +P ++
Sbjct: 121 NQTVGNYWIRANPNFGTVGFAGGINSAILRYQGAPVAEPTTTQT 164
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 172
Score = 45.1 bits (106), Expect = 3e-06
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 57/166 (34%)
Query: 149 PNSRYYEYDNPSHVVLVTDWYHNTTSDERWPG---------------------------- 180
P++ Y+ D+ + ++ + DWYH +
Sbjct: 1 PHAALYDEDDENTIITLADWYHIPAPSIQGAAQPDATLINGKGRYVGGPAAELSIVNVEQ 60
Query: 181 -----LRLHDVGQLPD--------TFLINGKGSYPVK-----------GERYDFVIETSK 216
+RL + P+ I + G+RY FV++ ++
Sbjct: 61 GKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQ 120
Query: 217 AVSSYWIHIKGLGPCED-----NKPFQLGVLKYDGSLFQKPPSSNP 257
V +YWI + +L+Y G+ P +S
Sbjct: 121 PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSAN 166
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 181
Score = 44.3 bits (104), Expect = 5e-06
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 156 YDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQLPDTFLINGKGSYPVKGERYDFVIE 213
YD V +TD+Y+ +D+ + ++ D LING P GE +
Sbjct: 1 YDIDLGVFPITDYYY-RAADDLVHFTQ-NNAPPFSDNVLINGTAVNPNTGEGQYANVT 56
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 168
Score = 43.9 bits (103), Expect = 6e-06
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 154 YEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQLPDTFLINGKGSYPVKGERYDFVIE 213
Y+ D+ S V+ + DWYH + S +P + PDT LING G +
Sbjct: 1 YDVDDASTVITIADWYH-SLSTVLFP--NPNKAPPAPDTTLINGLGRNSANPSAGQLAVV 57
Query: 214 TSKAVSSYWIHIKGLGPC 231
+ ++ Y I
Sbjct: 58 SVQSGKRYRFRIVSTSCF 75
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 39.3 bits (91), Expect = 2e-04
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 50 PHMDGVPMVCKGDTIVVDLHNKMPGRSTT---IHWHGLTQRLTPHMDGVPMVTQCPILEG 106
D G+T+ + + N P ++ I + V + G
Sbjct: 47 LTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAG 106
Query: 107 NVFRYKFLADAAGTYFWHSHDGFQKMD-GIIGNLIIRQPRTSD 148
+F D G Y H F+ + G +G L + +
Sbjct: 107 GSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPE 149
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 67
Score = 35.3 bits (81), Expect = 8e-04
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 102 PILEGNVFRYKFLADAAG----------TYFWHSHDGF--QKMDGIIGNLIIRQPRTSDP 149
I + Y + A + ++S G+IG L+I + T D
Sbjct: 2 AIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDK 61
Query: 150 NSR 152
+
Sbjct: 62 ETN 64
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 209
Score = 37.9 bits (87), Expect = 0.001
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 154 YEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQL--PDTFLINGKGSYP 202
+ YD +L++DW+H + ++ GL + + P T L+NG+G +
Sbjct: 2 FHYDG-EINLLLSDWWH-QSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFD 50
Score = 29.8 bits (66), Expect = 0.49
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 205 GERYDFVIETSKAVSSYWIHIKGLGPCEDNKPFQLGVLKYDGSLFQKPPSSNP 257
GE Y +I T + S + G N P L +L Y + K P+S P
Sbjct: 130 GESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPP 182
>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 165
Score = 35.0 bits (80), Expect = 0.007
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 14/105 (13%)
Query: 151 SRYYEYDNPSHVVLVTDWYHNTTSDERWPGLRLHDV-GQLPDTFLINGKGSY--PVKGER 207
++ D P V+V D + + + G DT L NG
Sbjct: 4 KQWGIDDVP---VIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGW 60
Query: 208 YDFVIETSKAVSSYWIHIKGLGPCEDNKPFQLGVLKYDGSLFQKP 252
+ S DN+P V+ DG L +P
Sbjct: 61 LRLRLLNGCNARSLNFAT------SDNRPLY--VIASDGGLLPEP 97
>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 200
Score = 31.7 bits (71), Expect = 0.088
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 50 PHMDGVPMVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPIL----- 104
V + + + + + + G H HG + P+
Sbjct: 66 LPAGSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVS 125
Query: 105 ---EGNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSD 148
G+ +F+ D G +F+H H F M+G+ T D
Sbjct: 126 LGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVD 172
>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 190
Score = 30.2 bits (67), Expect = 0.26
Identities = 17/121 (14%), Positives = 29/121 (23%), Gaps = 11/121 (9%)
Query: 38 TIHWHGLTQRLTPHMDGVPMVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPM 97
I V + I + + H HG +
Sbjct: 56 QILSGVTNPNDLLPGGAVISLPANQVIEISIPGGGNHP---FHLHGHNFDVVRTPGSSVY 112
Query: 98 VTQCPILE--------GNVFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDP 149
P+ G+ ++F+ D G +F H H + G+ P
Sbjct: 113 NYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIA 172
Query: 150 N 150
N
Sbjct: 173 N 173
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 199
Score = 30.2 bits (67), Expect = 0.29
Identities = 18/97 (18%), Positives = 23/97 (23%), Gaps = 10/97 (10%)
Query: 64 IVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPIL----------EGNVFRYKF 113
I + PG H HG + PI G+ +F
Sbjct: 82 ITLPATALAPGAPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTPAAGDNVTIRF 141
Query: 114 LADAAGTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPN 150
D G +F H H F G N
Sbjct: 142 QTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVKAAN 178
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 29.6 bits (66), Expect = 0.39
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 9/94 (9%)
Query: 57 MVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCP-----ILEGN---- 107
KG + H HG R+ P + +EGN
Sbjct: 88 AAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEV 147
Query: 108 VFRYKFLADAAGTYFWHSHDGFQKMDGIIGNLII 141
+ ++ A Y H H + G++ +
Sbjct: 148 LVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 181
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 174
Score = 28.9 bits (64), Expect = 0.70
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 23/110 (20%)
Query: 155 EYDNPSHVVLVTDWYHNTTSDERWPGLRLHDVGQLP----------DTFLINGKGSY--P 202
EYD +L+TD N +P + LP +T L+NGK
Sbjct: 6 EYD---VPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLE 62
Query: 203 VKGERYDFVIETSKAVSSYWIHIKGLGPCEDNKPFQLGVLKYDGSLFQKP 252
V+ +Y F + + +Y + + ++ F + DG L +
Sbjct: 63 VEPRKYRFRVINASNTRTYNLSL------DNGGDFI--QIGSDGGLLPRS 104
Score = 25.9 bits (56), Expect = 7.3
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 204 KGERYDFVIETSKAVSSYWI--HIKGLGPCEDNKPFQLGVLKYDGSLFQKPPSSNP 257
ERYD +I+ + I + G G + ++++ + +
Sbjct: 114 PAERYDIIIDFTAYEGESIILANSAGCGGDVNP-ETDANIMQFRVTKPLAQKDESR 168
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 94
Score = 27.0 bits (60), Expect = 1.6
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 18 VCKGDTIVVDLHNKMPGRSTTIH 40
K + +D K GR I
Sbjct: 25 KNKEGQVFIDPTGKANGRGAYIK 47
Score = 27.0 bits (60), Expect = 1.6
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIH 80
K + +D K GR I
Sbjct: 25 KNKEGQVFIDPTGKANGRGAYIK 47
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding
family B member 3, APBB3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 26
Score = 24.9 bits (54), Expect = 2.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 111 YKFLADAAGTYFWH 124
++ + DAAGTY+WH
Sbjct: 6 WRKIHDAAGTYYWH 19
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 27.5 bits (61), Expect = 3.9
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 237 FQLGVLKYDGSLFQKPPSSNPGYKGYPVNRIFNRPNADCNPDNTSNVCISHLNNKDFVKP 296
FQ+G +YD ++F+ ++ GY G+ + R + + +++++ + P
Sbjct: 371 FQIGRNQYDCNVFRADFATGTGYNGWATIDVEYR-DPAPYVHAQRYIRYCGIDSRELINP 429
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.461
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,647,761
Number of extensions: 79703
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 68
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)