BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13505
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C1C|A Chain A, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
pdb|2C1C|B Chain B, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
Length = 312
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 64 VINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLDGGIHAREW 120
VI+ YL +I Y V E+ EGRPI+ +KIS P+I +DGGIHAREW
Sbjct: 11 VIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIFIDGGIHAREW 70
Query: 121 IAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
I+P +V + + +L+E+ + K DWIL+P++NPDGY Y+ T +
Sbjct: 71 ISPPSVTWAIHKLVEDVTENDLLEKFDWILLPVVNPDGYKYTFTNE 116
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELP--RGGAQGFDLPNDQIRKVVHDMFEGVKVFAR 57
+G S+D+ +GV YT ELP G GF LP I +V + +EG+ V AR
Sbjct: 252 AGSSEDYAHS-IGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVGAR 305
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 79 KVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM---- 134
KVN IG + E RP+ +K S GG P I LD GIHAREW+ AT L+ +++
Sbjct: 29 KVN---IGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWVTQATALWTANKIVSDYG 84
Query: 135 ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
++P + +D L+P+ NPDGYV+S TK+
Sbjct: 85 KDPSITSILDALDIFLLPVTNPDGYVFSQTKN 116
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54
SGGS DW Y G+KY + EL G GF LP QI + + G+K
Sbjct: 245 SGGSIDWSYDY-GIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKA 293
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 79 KVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM---- 134
KVN IG + E RP+ +K S GG P I LD GIHAREW+ AT L+ +++
Sbjct: 128 KVN---IGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWVTQATALWTANKIVSDYG 183
Query: 135 ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
++P + +D L+P+ NPDGYV+S TK+
Sbjct: 184 KDPSITSILDALDIFLLPVTNPDGYVFSQTKN 215
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54
SGGS DW Y G+KY + EL G GF LP QI + + G+K
Sbjct: 343 SGGSIDWSYDY-GIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKA 391
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 85 IGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFP-- 141
IG + E RP+ +K S G GV P + L+ GIH+REWI+ AT ++ ++++ + + P
Sbjct: 132 IGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAI 191
Query: 142 --MFRKVDWILIPMLNPDGYVYSMTKD 166
+ K+D L+P+ NPDGYVY+ T++
Sbjct: 192 TSILEKMDIFLLPVANPDGYVYTQTQN 218
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54
SG S DW G+K+ +T EL G GF LP +QI + + G+K
Sbjct: 346 SGSSIDWAYDN-GIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKT 394
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 85 IGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFP-- 141
IG + E RP+ +K S G GV P + L+ GIH+REWI+ AT ++ ++++ + + P
Sbjct: 36 IGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAI 95
Query: 142 --MFRKVDWILIPMLNPDGYVYSMTKD 166
+ K+D L+P+ NPDGYVY+ T++
Sbjct: 96 TSILEKMDIFLLPVANPDGYVYTQTQN 122
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54
SG S DW G+K+ +T EL G GF LP +QI + + G+K
Sbjct: 250 SGSSIDWAYDN-GIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKT 298
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 85 IGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFP-- 141
IG + E RP+ +K S G GV P + L+ GIH+REWI+ AT ++ ++++ + + P
Sbjct: 38 IGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAI 97
Query: 142 --MFRKVDWILIPMLNPDGYVYSMTKD 166
+ K+D L+P+ NPDGYVY+ T++
Sbjct: 98 TSILEKMDIFLLPVANPDGYVYTQTQN 124
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54
SG S DW G+K+ +T EL G GF LP +QI + + G+K
Sbjct: 252 SGSSIDWAYDN-GIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKT 300
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 85 IGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFP-- 141
IG + E RP+ +K S G GV P + L+ GIH+REWI+ AT ++ ++++ + + P
Sbjct: 34 IGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAI 93
Query: 142 --MFRKVDWILIPMLNPDGYVYSMTKD 166
+ K+D L+P+ NPDGYVY+ T++
Sbjct: 94 TSILEKMDIFLLPVANPDGYVYTQTQN 120
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54
SG S DW G+K+ +T EL G GF LP +QI + + G+K
Sbjct: 248 SGSSIDWAYDN-GIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKT 296
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG---VGNPIIVLDGGIHAREWI 121
+++YL+ +A+ + + V V G++ EGR I+ ++IS P++++ +H REW+
Sbjct: 127 VDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDASKPVVMMQSLLHCREWV 186
Query: 122 APATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
LY + +L+ + + +DWI++P+ NPDGYV++ D
Sbjct: 187 TLPATLYAIHKLVIDVTESDLINNIDWIILPVANPDGYVHTFGGD 231
>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Human Carboxypeptidase B
Length = 309
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 64 VINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAP 123
I ++ + +A ++ S IG T EGR I +K+ G P I +D G HAREWI+P
Sbjct: 16 TIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIFMDCGFHAREWISP 75
Query: 124 ATVLYVLQQLMENP----ENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
A + +++ + + + K+D+ ++P+LN DGY+Y+ TK
Sbjct: 76 AFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTKS 122
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+GGSDDW G++Y +T EL G GF LP QIR + F +K A ++
Sbjct: 251 AGGSDDWAYD-QGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVASYV 304
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 64 VINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAP 123
I ++ + +A ++ S IG T EGR I +K+ G P I +D G HAREWI+P
Sbjct: 109 TIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIFMDCGFHAREWISP 168
Query: 124 ATVLYVLQQLMENP----ENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
A + +++ + + + K+D+ ++P+LN DGY+Y+ TK
Sbjct: 169 AFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTKS 215
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+GGSDDW G++Y +T EL G GF LP QIR + F +K A ++
Sbjct: 344 AGGSDDWAYD-QGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVASYV 397
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ E+ P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NPDG+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ EN P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NP+G+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPNGFAFTHSEN 123
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ E+ P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NPDG+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ EN P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NP+G+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPNGFAFTHSEN 123
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ E+ P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NPDG+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ E+ P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NPDG+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ EN P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NP+G+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPNGFAFTHSEN 123
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI AT ++ ++ E+ P F
Sbjct: 38 IGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFT 97
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NPDG+ ++ +++
Sbjct: 98 AILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGV 52
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGV 297
>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
Length = 309
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 78 HKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENP 137
H V+ IG T EGRPI +K S GG P I +D GIH+REW+ A+ ++ +++ ++
Sbjct: 31 HLVSKIQIGNTYEGRPIYVLKFSTGGSKRPAIWIDTGIHSREWVTQASGVWFAKKITQDY 90
Query: 138 ENFPMFRKV----DWILIPMLNPDGYVYSMTKD 166
F + D L + NPDG+ ++ + +
Sbjct: 91 GQDAAFTAILDTLDIFLEIVTNPDGFAFTHSTN 123
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQI 41
SG + DW G+KY +T EL G GF LP QI
Sbjct: 251 SGSTIDWTYS-QGIKYSFTFELRDTGRYGFLLPASQI 286
>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
Human Carboxypeptidase A1
Length = 307
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 78 HKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENP 137
H V+ IG T EGRPI +K S GG P I +D GIH+REW+ A+ ++ +++ ++
Sbjct: 30 HLVSKIQIGNTYEGRPIYVLKFSTGGSKRPAIWIDTGIHSREWVTQASGVWFAKKITQDY 89
Query: 138 ENFPMFRKV----DWILIPMLNPDGYVYSMTKD 166
F + D L + NPDG+ ++ + +
Sbjct: 90 GQDAAFTAILDTLDIFLEIVTNPDGFAFTHSTN 122
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQI 41
SG + DW G+KY +T EL G GF LP QI
Sbjct: 250 SGSTIDWTYS-QGIKYSFTFELRDTGRYGFLLPASQI 285
>pdb|1PCA|A Chain A, Three Dimensional Structure Of Porcine Pancreatic
Procarboxypeptidase A. A Comparison Of The A And B
Zymogens And Their Determinants For Inhibition And
Activation
Length = 403
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 85 IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFR 144
IG + EGRPI +K S GG P I +D GIH+REWI A+ ++ +++ EN F
Sbjct: 133 IGRSYEGRPIYVLKFSTGGSNRPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFT 192
Query: 145 KV----DWILIPMLNPDGYVYSMTKD 166
+ D L + NP+G+ ++ + +
Sbjct: 193 AILDSMDIFLEIVTNPNGFAFTHSDN 218
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQI 41
SGG DW G+KY ++ EL G +GF LP QI
Sbjct: 346 SGGVIDWTYNQ-GIKYSFSFELRDTGRRGFLLPASQI 381
>pdb|1NSA|A Chain A, Three-Dimensional Structure Of Porcine Procarboxypeptidase
B: A Structural Basis Of Its Inactivity
Length = 395
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 39 DQIRKVVHDMFEGVK-----VFARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRP 93
+ +R V+ F+ V + ++ E I ++ + + ++ S IG T +G
Sbjct: 74 NNLRSVLEAQFDSVSRTTGHSYEKYNNWE-TIEAWTEQVTSKNPDLISRSAIGTTFDGDN 132
Query: 94 IQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN----PENFPMFRKVDWI 149
I +K+ G P I +D G HAREWI+ A + ++ + +D+
Sbjct: 133 IYLLKVGKPGSNKPAIFMDCGFHAREWISQAFCQWFVRDAVRTYGYEAHMTEFLDNLDFY 192
Query: 150 LIPMLNPDGYVYSMTKD 166
++P+LN DGY+Y+ TK+
Sbjct: 193 VLPVLNIDGYIYTWTKN 209
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREFV 64
+GGSDDW G+KY +T EL G GF LP QI+ + VK +V
Sbjct: 338 AGGSDDWAYN-QGIKYSFTFELRDKGRFGFVLPESQIQATCQETMLAVK---------YV 387
Query: 65 INSYLKHI 72
N L+H+
Sbjct: 388 TNYTLEHL 395
>pdb|1Z5R|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1ZG7|A Chain A, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|B Chain B, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|C Chain C, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|A Chain A, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|B Chain B, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|C Chain C, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|A Chain A, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|B Chain B, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|C Chain C, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|2JEW|A Chain A, Crystal Structure Of ( (2s)-5-Amino-2-((1-N-Propyl-1h-
Imidazol-4-Yl)methyl)pentanoic Acid) Uk396,082 A Tafia
Inhibitor, Bound To Activated Porcine Pancreatic
Carboxypeptidaseb
pdb|2PIY|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIZ|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PJ0|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ1|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ2|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ3|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ4|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ4|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ5|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ6|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(2-Phenyl-Ethanesulfonylamino)-Propyl]-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ7|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ8|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ9|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Benzo[1,2,
5]thiadiazole-4-Sulfonylamino)-2-Methyl-Propyl]-
Hydroxy-Phosphinoyl}-Propionic Acid Complex
pdb|2PJA|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJB|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJC|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
Length = 306
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 64 VINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAP 123
I ++ K + ++ + IG T G I +K+ G P I +D G HAREWI+
Sbjct: 14 TIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISH 73
Query: 124 ATVLYVLQQ--LMENPENF--PMFRKVDWILIPMLNPDGYVYSMTKD 166
A + +++ L E+ K+D+ ++P+LN DGY+Y+ TK+
Sbjct: 74 AFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKN 120
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+GGSDDW G+KY +T EL G GF LP QI+ + +K ++
Sbjct: 249 AGGSDDWAYD-QGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYV 302
>pdb|3GLJ|A Chain A, A Polymorph Of Carboxypeptidase B Zymogen Structure
Length = 401
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 64 VINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAP 123
I ++ K + ++ + IG T G I +K+ G P I +D G HAREWI+
Sbjct: 109 TIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISH 168
Query: 124 ATVLYVLQQLM----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
A + +++ + K+D+ ++P+LN DGY+Y+ TK+
Sbjct: 169 AFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKN 215
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+GGSDDW G+KY +T EL G GF LP QI+ + +K ++
Sbjct: 344 AGGSDDWAYD-QGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYV 397
>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
Fibrinolys Inhibitor, Tafia, In Complex With
Tick-Derived Funnelin Inh Tci
Length = 309
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 85 IGETIEGRPIQAVKIS-HGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN----PEN 139
IG + E P+ +K+S I +D GIHAREWI+PA L+ + + + +
Sbjct: 35 IGSSFEKYPLYVLKVSGKEQAAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIGQY 94
Query: 140 FPMFRKVDWILIPMLNPDGYVYSMTKD 166
+ R VD+ ++P++N DGY YS K+
Sbjct: 95 TNLLRLVDFYVMPVVNVDGYDYSWKKN 121
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 6 GGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIER 61
GG DDW+ +G+KY +T+EL G GF LP I+ + F V A + R
Sbjct: 253 GGGDDWIYD-LGIKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIAWHVIR 307
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 39 DQIRKVVHDMFEGVKVFARFIEREFVIN---SYLKHIARIYGHKVNVSTIGETIEGRPIQ 95
D I++ + + + A + E+ +N S+++ I + + IG + E P+
Sbjct: 101 DLIQQQISNDTVSPRASASYYEQYHSLNEIYSWIEFITERHPDMLTKIHIGSSFEKYPLY 160
Query: 96 AVKIS-HGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN----PENFPMFRKVDWIL 150
+K+S I +D GIHAREWI+PA L+ + + + + + R VD+ +
Sbjct: 161 VLKVSGKEQTAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIGQYTNLLRLVDFYV 220
Query: 151 IPMLNPDGYVYSMTKD 166
+P++N DGY YS K+
Sbjct: 221 MPVVNVDGYDYSWKKN 236
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 6 GGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIER 61
GG DDW+ +G+KY +T+EL G GF LP I+ + F V A + R
Sbjct: 368 GGGDDWIYD-LGIKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIAWHVIR 422
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 39 DQIRKVVHDMFEGVKVFARFIEREFVIN---SYLKHIARIYGHKVNVSTIGETIEGRPIQ 95
D I++ + + + A + E+ +N S+++ I + + IG + E P+
Sbjct: 101 DLIQQQISNDTVSPRASASYYEQYHSLNEIYSWIEFITERHPDMLTKIHIGSSFEKYPLY 160
Query: 96 AVKIS-HGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN----PENFPMFRKVDWIL 150
+K+S I +D GIHAREWI+PA L+ + + + + + R VD+ +
Sbjct: 161 VLKVSGKEQTAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIGQYTNLLRLVDFYV 220
Query: 151 IPMLNPDGYVYSMTKD 166
+P++N DGY YS K+
Sbjct: 221 MPVVNVDGYDYSWKKN 236
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 6 GGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIER 61
GG DDW+ +G+KY +T+EL G GF LP I+ + F V A + R
Sbjct: 368 GGGDDWIYD-LGIKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIAWHVIR 422
>pdb|3D4U|A Chain A, Bovine Thrombin-Activatable Fibrinolysis Inhibitor (Tafia)
In Complex With Tick-Derived Carboxypeptidase Inhibitor
Length = 309
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAP 123
I S+++ + Y V IG + E P+ +K+S + +D GIHAREWI+P
Sbjct: 15 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISP 74
Query: 124 ATVLYVLQQLM----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
A L+ + + + + + + +D+ ++P++N DGY Y+ KD
Sbjct: 75 AFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKD 121
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 6 GGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
GGSDDW+ +G+KY +T EL G GF LP IR + V A +
Sbjct: 253 GGSDDWIYD-LGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHV 305
>pdb|3DGV|A Chain A, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|B Chain B, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|C Chain C, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3OSL|A Chain A, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
pdb|3OSL|C Chain C, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
Length = 401
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAP 123
I S+++ + Y V IG + E P+ +K+S + +D GIHAREWI+P
Sbjct: 107 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISP 166
Query: 124 ATVLYVLQQLM----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
A L+ + + + + + + +D+ ++P++N DGY Y+ KD
Sbjct: 167 AFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKD 213
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 6 GGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
GGSDDW+ +G+KY +T EL G GF LP IR + V A +
Sbjct: 345 GGSDDWIYD-LGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHV 397
>pdb|1CPB|A Chain A, Structure Of Carboxypeptidase B At 2.8 Angstroms
Resolution
Length = 82
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 64 VINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAP 123
I ++ + +A ++ S IG T G I +K+ G P + +D G HAREWI+P
Sbjct: 14 TIEAWTEQVASENPDLISRSAIGTTFLGNTIYLLKVGKPGSNKPAVFMDCGFHAREWISP 73
Query: 124 ATVLYVLQQ 132
A + +++
Sbjct: 74 AFCQWFVRE 82
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 72 IARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGIHAREWIAPATVL 127
+ + Y ++ V +G ++EGR + A++IS + P + +H E + ++
Sbjct: 53 LEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLV 112
Query: 128 YVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYS 162
Y+ Q L+ N E + D L+P +NPDGY S
Sbjct: 113 YMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALS 151
>pdb|1CPB|B Chain B, Structure Of Carboxypeptidase B At 2.8 Angstroms
Resolution
Length = 217
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
SGGSDDW G+KY +T EL G GF LP QI+ + +K ++
Sbjct: 160 SGGSDDWAYD-QGIKYSFTFELRDKGRYGFVLPESQIQPTCEETMLAIKYVTSYV 213
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 145 KVDWILIPMLNPDGYVYSMTKD 166
K+D+ ++P++N DGY+Y+ T +
Sbjct: 10 KLDFYVLPVVNIDGYIYTWTTN 31
>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
pdb|3L2N|B Chain B, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
Length = 395
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 63 FVINSYLKHIARIYGHKVN--VST--IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAR 118
F SY +H+ I +++ VST +G T++GR VK+ I + H
Sbjct: 128 FTPYSYERHLDLISAVQLHPLVSTEHLGLTLDGRDXTLVKVGDDDPSKKSIWITARQHPG 187
Query: 119 EWIAPATVLYVLQQLMEN--PENFPMFRKVDWILIPMLNPDGYV 160
E A V +L QL++N P + + K ++ ++P NPDG V
Sbjct: 188 ETXAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNXNPDGSV 231
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 46 HDMFEGVKVFARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG--- 102
H F +++F R E+ I R+Y ++G+++E R + ++IS
Sbjct: 10 HHHFSDMEIFLRRYANEY------PSITRLY-------SVGKSVELRELYVMEISDNPGI 56
Query: 103 -GVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN----PENFPMFRKVDWILIPMLNPD 157
G P G +H E + +L +++ L +N PE + + ++P +NPD
Sbjct: 57 HEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPD 116
Query: 158 GYVYSMTKD 166
GY S D
Sbjct: 117 GYEKSQEGD 125
>pdb|2QVP|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|C Chain C, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
Length = 275
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 55 FARFIEREFVINSYLKHIARIYGHKVNVST----IGETIEGR----PIQAVKISHGGVGN 106
F F+ R + I R Y + + T +G I G+ P+ ++ G
Sbjct: 7 FQTFVWRSEIFECQSTDIQRFYS-LLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGL 65
Query: 107 PIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYV 160
P +++ G H E P +L+ L QL + +F++V+ ++P++NP G+
Sbjct: 66 PNLLISAGFHGEESAGPWGLLHFLSQL-----DGELFKRVNLSVLPLVNPTGFA 114
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 105 GNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGY 159
G P +++ G H E P +L+ L + + +F +V+ L+P++NP G+
Sbjct: 65 GLPSLLISAGFHGEESAGPWGLLHFLSEASAD-----LFERVNLSLLPLVNPTGF 114
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 69 LKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAREWIAPAT 125
+ +A Y + V +IG++ EGR + AVKIS P ++ HARE +
Sbjct: 19 INTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEM 78
Query: 126 VLYVLQQLMEN 136
LY L +N
Sbjct: 79 ALYTLDLFTQN 89
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 69 LKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAREWIAPAT 125
+ +A Y + V +IG++ EGR + AVKIS P ++ HARE +
Sbjct: 19 INTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEM 78
Query: 126 VLYVLQQLMEN 136
LY L +N
Sbjct: 79 ALYTLDLFTQN 89
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 69 LKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAREWIAPAT 125
+ +A Y + V +IG++ EGR + AVKIS P ++ HARE +
Sbjct: 19 INTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEM 78
Query: 126 VLYVLQQLMEN 136
LY L +N
Sbjct: 79 ALYTLDLFTQN 89
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 69 LKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAREWIAPAT 125
+ +A Y + V +IG++ EGR + AVKIS P ++ HARE +
Sbjct: 19 INTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEM 78
Query: 126 VLYVLQQLMEN 136
LY L +N
Sbjct: 79 ALYTLDLFTQN 89
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 61 REFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKI----SHGGVGNPIIVLDGGIH 116
R+ + ++LK +A+ Y ++ +IG++++GR + + + +G P +H
Sbjct: 7 RQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMH 66
Query: 117 AREWIAPATVLYVLQQLM----ENPENFPMFRKVDWILIPMLNPDGY 159
E + +L+++ L+ ++PE + ++P +NPDG+
Sbjct: 67 GDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGF 113
>pdb|3B2Y|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
pdb|3B2Y|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
Length = 275
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 107 PIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGY 159
P +++ G H E P L+ L+ L +F +V+ L+P++NP G+
Sbjct: 67 PSLLISSGFHGEEAAGPWGXLHFLRGLQP-----ALFERVNLSLLPLVNPTGF 114
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 82 VSTIGETIEGRPIQAVKIS-HGGVGNPI---IVLDGGIHAREWIAPATVLYVLQQLMENP 137
V +IG ++EGR + ++ S H G+ P+ + G +H E + +L + + L E
Sbjct: 29 VYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEALGRELMLQLSEFLCEEF 88
Query: 138 EN-----FPMFRKVDWILIPMLNPDGY 159
N + + ++P +NPDGY
Sbjct: 89 RNRNQRIVQLIQDTRIHILPSMNPDGY 115
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 19/168 (11%)
Query: 3 VNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIERE 62
VN+G S Y Y G + F +P+ +H E + RF E
Sbjct: 70 VNAGQS-----AYSHAWSGYQAVASYDGERWFRVPSQYDADGLHFQLEPEESEVRFAYFE 124
Query: 63 -FVINSYLKHIARIYG-HKVNVSTIGETIEGRPIQAVKISHGGVGNP----IIVLDGGIH 116
+ + + + R G V +G +++GR I+ +++ + I G H
Sbjct: 125 PYSRERHARLVERALGIEGVERLAVGTSVQGRDIELLRVRRHPDSHLKLWVIAQQHPGEH 184
Query: 117 AREWIAPATVLYVLQQLMENPENFPMFR---KVDWILIPMLNPDGYVY 161
EW + + ++ P++ M R K D L+P +NPDG +
Sbjct: 185 MAEWFMEGLI-----ERLQRPDDTEMQRLLEKADLYLVPNMNPDGAFH 227
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 54 VFARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDG 113
V A ++ + VI+ + R++ K N ++G PI A +IS G + +DG
Sbjct: 293 VSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352
Query: 114 GIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
++ +Y L++L N ++ ++ D IL P+ P Y ++D
Sbjct: 353 QVN----------VYDLKKL--NSKSRSLYGNRDGILNPLPIPLYASYQSSQD 393
>pdb|3K8P|C Chain C, Structural Basis For Vesicle Tethering By The Dsl1 Complex
Length = 357
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 5 SGGSDDWVKGYVGVKYCYT-----VELPRGGAQGFDLPNDQIR----KVVHDMFEGVKVF 55
S +DW + Y V+Y YT ++L ++ DL + I+ K+V+D + +K
Sbjct: 144 SEKVNDWTQLYKDVRYLYTENPKLLQLXELNSRRLDLNLNLIKKTIYKLVNDQLQELKDN 203
Query: 56 ARFIEREFVINS---YLKHIARIYGHKVNVSTI 85
R + + I+S YLK A +K+ +TI
Sbjct: 204 ERTPDWDITISSLLPYLKKTALPTLYKLEDNTI 236
>pdb|2EX2|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli
pdb|2EX6|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Ampicillin
pdb|2EX8|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-G
pdb|2EX9|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-V
pdb|2EXA|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Farom
pdb|2EXB|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Flomox
Length = 458
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 104 VGNPIIVLDGGIHAREWIAPATVLYVLQQLME--NPENF 140
+GN II G+ IAPAT++ VLQ + + N NF
Sbjct: 329 IGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNF 367
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 58 FIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPII 109
+ R+ + YLK +A +YG KVN + I + +E + +K G + I
Sbjct: 88 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTI 139
>pdb|2BMB|A Chain A, X-Ray Structure Of The Bifunctional 6-Hydroxymethyl-7,8-
Dihydroxypterin Pyrophosphokinase Dihydropteroate
Synthase From Saccharomyces Cerevisiae
Length = 545
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGI-HA 117
I++EFV N+ ++ + + V + +G+ I R I+A+ GV I++D G+ A
Sbjct: 386 IQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAID---NGVKRWQILIDPGLGFA 442
Query: 118 REW 120
+ W
Sbjct: 443 KTW 445
>pdb|4H3W|A Chain A, Crystal Structure Of A Hypothetical Protein (Bdi_1231)
From Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
pdb|4H3W|B Chain B, Crystal Structure Of A Hypothetical Protein (Bdi_1231)
From Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
Length = 330
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 112 DGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVD 147
D + W+AP YV + N E P R+VD
Sbjct: 10 DDAVXGESWVAPLGXGYVTSDDVVNVEXVPSIREVD 45
>pdb|3A3D|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (dacb)
From Haemophilus Influenzae
pdb|3A3D|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (dacb)
From Haemophilus Influenzae
pdb|3A3E|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Novel Beta-
Lactam (Cmv)
pdb|3A3E|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Novel Beta-
Lactam (Cmv)
pdb|3A3F|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae,Complexed With Novel Beta-
Lactam (Fmz)
pdb|3A3F|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae,Complexed With Novel Beta-
Lactam (Fmz)
pdb|3A3I|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Ampicillin
(Aix)
pdb|3A3I|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Ampicillin
(Aix)
Length = 453
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 105 GNPIIVLDGGIHAREWIAPATVLYVLQQLMENP------ENFPM 142
GN I+ G+ +AP T+L VL+ + +N E FP+
Sbjct: 326 GNSILADGSGLSRHNLVAPKTMLSVLEYIAKNEDKLHLMETFPI 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.143 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,725,997
Number of Sequences: 62578
Number of extensions: 244268
Number of successful extensions: 582
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 85
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)