Query psy13505
Match_columns 167
No_of_seqs 167 out of 1412
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:05:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2650|consensus 100.0 4.3E-34 9.3E-39 234.6 10.5 112 55-166 117-233 (418)
2 cd03872 M14_CPA6 Carboxypeptid 100.0 1.4E-32 3E-37 219.2 11.6 108 59-166 2-114 (300)
3 cd03871 M14_CPB Peptidase M14 100.0 1.4E-32 3E-37 219.4 11.5 111 56-166 3-117 (300)
4 cd06247 M14_CPO Peptidase M14 100.0 2.6E-32 5.6E-37 217.5 11.6 110 57-166 2-116 (298)
5 cd06246 M14_CPB2 Peptidase M14 100.0 5.3E-32 1.1E-36 216.2 11.8 111 56-166 2-117 (300)
6 cd03870 M14_CPA Peptidase M14 100.0 5.3E-32 1.2E-36 216.2 10.4 111 56-166 3-117 (301)
7 cd06248 M14_CPA_CPB_like Pepti 100.0 3.5E-31 7.6E-36 212.1 9.8 110 57-166 2-118 (304)
8 cd06905 Peptidase_M14-like_8 A 100.0 8.4E-31 1.8E-35 213.3 11.0 108 57-164 2-117 (360)
9 cd06245 M14_CPD_III The third 100.0 6.8E-31 1.5E-35 214.5 10.2 108 58-165 1-116 (363)
10 cd03863 M14_CPD_II The second 100.0 1.3E-30 2.8E-35 213.5 10.3 108 59-166 6-121 (375)
11 cd03869 M14_CPX_like Peptidase 100.0 1.2E-30 2.5E-35 214.5 9.8 108 58-165 4-120 (405)
12 cd03867 M14_CPZ Peptidase M14- 100.0 1.7E-30 3.8E-35 214.5 9.7 108 59-166 1-117 (395)
13 cd03859 M14_CPT Peptidase M14- 100.0 6E-30 1.3E-34 204.4 11.9 108 57-164 2-116 (295)
14 cd03868 M14_CPD_I The first ca 100.0 3.8E-30 8.3E-35 211.4 10.1 108 59-166 1-116 (372)
15 cd03865 M14_CPE_H Peptidase M1 100.0 1.4E-29 2.9E-34 208.2 9.6 106 58-163 4-118 (402)
16 cd03860 M14_CP_A-B_like The Pe 100.0 3.5E-29 7.7E-34 200.0 10.7 107 59-165 1-110 (294)
17 cd03866 M14_CPM Peptidase M14 100.0 3.4E-29 7.4E-34 205.5 10.1 105 58-162 4-116 (376)
18 cd03858 M14_CP_N-E_like Carbox 100.0 4.6E-29 9.9E-34 205.3 10.5 107 59-165 1-116 (374)
19 smart00631 Zn_pept Zn_pept. 100.0 8E-29 1.7E-33 196.4 10.6 107 59-165 1-112 (277)
20 cd03864 M14_CPN Peptidase M14 100.0 5.5E-29 1.2E-33 204.8 9.5 106 59-164 1-115 (392)
21 cd06227 Peptidase_M14-like_2 A 100.0 5.2E-28 1.1E-32 190.8 10.7 106 59-165 2-119 (272)
22 cd06242 Peptidase_M14-like_1_5 99.9 1.4E-27 3E-32 188.1 10.9 108 59-166 2-114 (268)
23 cd06908 M14_AGBL4_like Peptida 99.9 1.2E-27 2.7E-32 187.2 8.9 95 69-163 1-101 (261)
24 cd06237 M14_Nna1_like_3 A bact 99.9 8.5E-27 1.9E-31 181.3 8.9 107 57-166 5-113 (244)
25 PF00246 Peptidase_M14: Zinc c 99.9 4.4E-27 9.4E-32 186.5 6.7 99 65-163 1-106 (279)
26 cd06234 M14_Nna1_like_1 A bact 99.9 3.1E-26 6.6E-31 179.6 9.4 103 59-163 10-114 (263)
27 cd06226 M14_CPT_like Peptidase 99.9 1.8E-25 4E-30 177.8 9.1 89 76-164 1-104 (293)
28 cd03856 M14_Nna1_like Peptidas 99.9 3.6E-24 7.8E-29 168.8 8.9 103 60-166 11-115 (269)
29 cd06241 Peptidase_M14-like_1_4 99.9 8.7E-24 1.9E-28 166.4 9.4 94 67-162 1-103 (266)
30 cd06907 M14_AGBL2-3_like Pepti 99.9 5.8E-24 1.3E-28 165.8 7.7 87 77-163 11-104 (261)
31 cd06235 M14_Nna1_like_2 Subgro 99.9 1E-23 2.2E-28 165.5 8.8 87 76-162 9-102 (258)
32 cd06239 Peptidase_M14-like_1_2 99.9 9.9E-24 2.2E-28 162.6 8.0 93 72-167 2-96 (231)
33 cd06236 M14_AGBL5_like Peptida 99.9 1.5E-23 3.2E-28 166.7 8.4 85 79-163 15-126 (304)
34 cd06228 Peptidase_M14-like_3 A 99.9 2E-23 4.3E-28 167.9 7.1 82 84-166 5-103 (332)
35 cd06906 M14_Nna1 Peptidase M14 99.9 2.2E-22 4.8E-27 157.7 7.6 95 69-163 4-110 (278)
36 cd06243 Peptidase_M14-like_1_6 99.9 3.9E-22 8.4E-27 154.3 7.2 83 85-167 1-92 (236)
37 KOG2649|consensus 99.9 1E-21 2.2E-26 161.4 8.9 110 55-164 65-182 (500)
38 cd06229 M14_Endopeptidase_I Pe 99.8 2.2E-21 4.7E-26 152.3 8.2 75 88-165 1-84 (255)
39 cd06240 Peptidase_M14-like_1_3 99.8 9.6E-22 2.1E-26 154.7 5.8 81 81-161 1-114 (273)
40 cd06232 Peptidase_M14-like_5 P 99.8 2E-21 4.3E-26 148.0 6.9 72 86-167 21-95 (240)
41 cd03857 Peptidase_M14-like_1 P 99.8 3.2E-21 7E-26 148.8 7.4 83 85-167 1-93 (226)
42 cd06238 Peptidase_M14-like_1_1 99.8 8.9E-21 1.9E-25 149.5 5.3 76 85-160 1-104 (271)
43 cd06244 Peptidase_M14-like_1_7 99.8 7.1E-20 1.5E-24 143.2 7.5 82 85-166 1-130 (268)
44 cd03862 Peptidase_M14-like_7 A 99.7 1.8E-18 3.9E-23 136.6 6.3 78 90-167 8-89 (273)
45 cd06231 Peptidase_M14-like_4 A 99.7 6.3E-18 1.4E-22 131.0 8.5 84 79-167 14-98 (236)
46 PRK10602 murein peptide amidas 99.7 1.2E-17 2.5E-22 129.3 6.1 79 79-167 14-92 (237)
47 KOG2650|consensus 99.6 1.1E-16 2.5E-21 132.0 2.2 58 1-58 360-417 (418)
48 KOG3641|consensus 99.6 3.9E-15 8.4E-20 124.5 7.6 107 56-162 376-486 (650)
49 cd03872 M14_CPA6 Carboxypeptid 99.5 4.4E-15 9.4E-20 118.8 2.6 58 1-59 239-296 (300)
50 cd06247 M14_CPO Peptidase M14 99.5 1.1E-14 2.5E-19 116.3 2.4 56 1-57 241-296 (298)
51 cd00596 Peptidase_M14_like The 99.5 8.1E-14 1.8E-18 105.0 5.5 59 109-167 1-61 (196)
52 cd06246 M14_CPB2 Peptidase M14 99.4 3.7E-14 8.1E-19 113.6 2.3 57 1-58 242-298 (300)
53 cd06248 M14_CPA_CPB_like Pepti 99.4 4.4E-14 9.5E-19 113.5 2.6 58 1-58 246-303 (304)
54 cd03870 M14_CPA Peptidase M14 99.4 5.6E-14 1.2E-18 112.6 2.5 57 1-58 241-297 (301)
55 cd03871 M14_CPB Peptidase M14 99.4 8.8E-14 1.9E-18 111.4 2.4 57 1-58 242-298 (300)
56 COG2866 Predicted carboxypepti 99.2 1.7E-11 3.7E-16 100.9 6.1 82 79-163 120-206 (374)
57 cd03860 M14_CP_A-B_like The Pe 99.1 5.1E-11 1.1E-15 95.4 2.7 57 1-57 236-292 (294)
58 cd06233 Peptidase_M14-like_6 P 99.0 1.7E-09 3.8E-14 85.7 9.3 103 60-167 3-109 (283)
59 cd06250 M14_PaAOTO_like An unc 98.9 2.1E-09 4.6E-14 88.3 6.8 74 85-161 5-80 (359)
60 cd06255 M14_ASTE_ASPA_like_5 A 98.7 2.2E-08 4.8E-13 80.2 5.6 74 87-167 4-79 (293)
61 cd03867 M14_CPZ Peptidase M14- 98.7 5.3E-09 1.2E-13 87.0 1.5 53 1-58 263-315 (395)
62 cd06251 M14_ASTE_ASPA_like_1 A 98.6 5E-08 1.1E-12 77.9 5.1 66 94-166 9-74 (287)
63 cd06254 M14_ASTE_ASPA_like_4 A 98.5 2.1E-07 4.6E-12 74.4 4.9 64 93-163 5-68 (288)
64 cd06253 M14_ASTE_ASPA_like_3 A 98.5 2E-07 4.3E-12 74.9 4.5 71 92-165 8-78 (298)
65 cd06252 M14_ASTE_ASPA_like_2 A 98.4 5.6E-07 1.2E-11 72.9 5.7 69 90-166 20-88 (316)
66 cd03858 M14_CP_N-E_like Carbox 98.4 1.1E-07 2.4E-12 78.6 1.5 49 1-54 243-291 (374)
67 cd03868 M14_CPD_I The first ca 98.3 2.6E-07 5.7E-12 76.3 1.9 44 1-49 241-284 (372)
68 cd03866 M14_CPM Peptidase M14 98.3 2.8E-07 6.1E-12 76.2 1.6 44 1-49 240-283 (376)
69 TIGR02994 ectoine_eutE ectoine 98.3 1.3E-06 2.8E-11 71.0 4.9 68 92-167 35-102 (325)
70 PF04952 AstE_AspA: Succinylgl 98.2 8.7E-07 1.9E-11 70.6 3.6 54 107-166 3-56 (292)
71 cd06228 Peptidase_M14-like_3 A 98.2 8.8E-07 1.9E-11 71.9 3.2 31 1-31 271-307 (332)
72 PRK05324 succinylglutamate des 97.9 1.1E-05 2.5E-10 65.6 4.6 62 98-164 39-100 (329)
73 cd03855 M14_ASTE Peptidase M14 97.9 2.1E-05 4.6E-10 63.9 4.9 64 96-164 32-95 (322)
74 COG3608 Predicted deacylase [G 97.7 4.7E-05 1E-09 61.6 4.9 64 95-166 39-102 (331)
75 TIGR03242 arg_catab_astE succi 97.7 6.9E-05 1.5E-09 60.8 4.8 57 103-164 38-94 (319)
76 PRK02259 aspartoacylase; Provi 97.6 2.9E-05 6.4E-10 62.1 2.5 52 107-164 3-54 (288)
77 cd06256 M14_ASTE_ASPA_like_6 A 97.5 0.00014 3.1E-09 59.2 4.0 51 107-164 35-85 (327)
78 cd03856 M14_Nna1_like Peptidas 97.4 8.6E-05 1.9E-09 58.9 1.9 31 1-31 213-243 (269)
79 cd06904 M14_MpaA_like Peptidas 96.9 0.00066 1.4E-08 50.5 2.4 26 109-134 1-26 (178)
80 cd03863 M14_CPD_II The second 96.9 0.00045 9.7E-09 57.3 1.4 55 1-73 242-296 (375)
81 PF10994 DUF2817: Protein of u 96.8 0.022 4.8E-07 46.7 10.5 102 60-166 3-108 (341)
82 COG2988 Succinylglutamate desu 96.2 0.013 2.9E-07 46.6 5.7 62 71-134 8-71 (324)
83 PF09892 DUF2119: Uncharacteri 95.9 0.02 4.3E-07 42.8 5.3 47 107-162 7-53 (193)
84 cd06910 M14_ASTE_ASPA_like_7 A 95.9 0.006 1.3E-07 48.4 2.7 26 107-132 1-26 (272)
85 cd06909 M14_ASPA Aspartoacylas 95.6 0.012 2.6E-07 47.0 3.3 28 107-134 1-28 (282)
86 cd06230 M14_ASTE_ASPA_like The 95.1 0.014 3.1E-07 45.6 2.3 26 109-134 1-26 (252)
87 cd03862 Peptidase_M14-like_7 A 94.1 0.025 5.4E-07 45.0 1.3 26 1-26 207-238 (273)
88 COG4073 Uncharacterized protei 90.9 0.22 4.8E-06 36.6 2.6 41 110-159 18-58 (198)
89 KOG3641|consensus 86.4 0.23 5E-06 43.0 0.2 102 60-165 53-180 (650)
90 PF12897 Aminotran_MocR: Alani 75.7 2.5 5.4E-05 35.5 2.6 32 127-164 160-193 (425)
91 cd03869 M14_CPX_like Peptidase 58.5 7.9 0.00017 32.7 2.3 37 2-43 275-311 (405)
92 cd03864 M14_CPN Peptidase M14 56.8 7 0.00015 32.8 1.7 27 2-29 262-288 (392)
93 PF11704 Folliculin: Vesicle c 46.8 41 0.00089 24.7 4.3 61 15-75 45-105 (167)
94 KOG1137|consensus 43.0 46 0.00099 29.5 4.5 37 77-118 11-48 (668)
95 PF07454 SpoIIP: Stage II spor 33.9 2E+02 0.0043 22.9 6.5 73 57-134 138-211 (268)
96 PF04327 DUF464: Protein of un 31.5 78 0.0017 21.1 3.4 21 62-82 83-103 (103)
97 cd06235 M14_Nna1_like_2 Subgro 30.6 25 0.00055 27.7 1.0 24 4-27 203-226 (258)
98 PF05127 Helicase_RecD: Helica 30.0 58 0.0013 24.2 2.8 31 104-134 112-142 (177)
99 COG2868 Predicted ribosomal pr 30.0 92 0.002 21.3 3.5 23 62-84 84-106 (109)
100 PRK14553 hypothetical protein; 29.5 94 0.002 20.9 3.6 23 62-84 83-105 (108)
101 cd06245 M14_CPD_III The third 28.3 34 0.00074 28.4 1.4 37 2-43 233-269 (363)
102 PF04083 Abhydro_lipase: Parti 26.8 1.3E+02 0.0029 18.2 3.6 31 86-116 17-53 (63)
103 PF13941 MutL: MutL protein 26.4 4.3E+02 0.0093 22.9 8.4 49 106-157 124-190 (457)
104 PF11943 DUF3460: Protein of u 26.0 59 0.0013 19.8 1.8 19 63-81 5-23 (60)
105 PF01612 DNA_pol_A_exo1: 3'-5' 24.7 2.5E+02 0.0054 19.6 7.5 74 60-141 5-80 (176)
106 PF12444 Sox_N: Sox developmen 24.4 37 0.00081 22.1 0.8 17 138-154 65-81 (84)
107 PF00113 Enolase_C: Enolase, C 24.3 80 0.0017 25.5 2.8 26 59-85 132-157 (295)
108 TIGR01700 PNPH purine nucleosi 24.2 71 0.0015 24.9 2.5 38 87-128 34-73 (249)
109 COG1647 Esterase/lipase [Gener 23.6 42 0.0009 26.2 1.1 56 63-123 70-126 (243)
110 PF07676 PD40: WD40-like Beta 22.3 41 0.0009 17.6 0.6 24 141-164 3-26 (39)
111 PF00838 TCTP: Translationally 22.0 1.3E+02 0.0029 22.0 3.4 29 125-159 113-141 (165)
112 PF13124 DUF3963: Protein of u 21.3 93 0.002 16.8 1.8 17 55-73 8-24 (40)
113 PRK13300 tRNA CCA-pyrophosphor 20.4 3.6E+02 0.0077 23.3 6.1 90 61-159 23-126 (447)
114 PF02114 Phosducin: Phosducin; 20.2 3.2E+02 0.0069 21.6 5.5 99 59-166 158-263 (265)
No 1
>KOG2650|consensus
Probab=100.00 E-value=4.3e-34 Score=234.62 Aligned_cols=112 Identities=40% Similarity=0.726 Sum_probs=107.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecC-CCCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 55 FARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 55 ~~~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~-~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
.++.|++++||++||+.|+++||+++++..||+|+|||+|.+++|+.+ +++||+|||.||+|||||+++.++++++++|
T Consensus 117 ~~~~Y~~le~I~~~l~~l~~~~P~~v~~~~IG~s~EgR~i~~lkIs~~~~~~k~~I~id~GiHAREWIspAta~~~i~qL 196 (418)
T KOG2650|consen 117 NWERYHSLEEIYEWLDNLAERYPDLVSLIHIGRSYEGRPLKVLKISGGDNRNKKAIFIDAGIHAREWISPATALWFINQL 196 (418)
T ss_pred cHHHhcCHHHHHHHHHHHHHhCCCceEEEEcccccCCceEEEEEecCCCCCCCceEEEecchhHHhhccHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999998 7789999999999999999999999999999
Q ss_pred h----cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 134 M----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 134 ~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
+ +|+.++++|++++|+|+|++|||||+|||++|
T Consensus 197 v~~y~~~~~~~~ll~~~dwyI~Pv~NPDGYeYS~t~~ 233 (418)
T KOG2650|consen 197 VSSYGRDPAVTKLLDKLDWYILPVVNPDGYEYSRTTD 233 (418)
T ss_pred HhhhccCHHHHHHHhcCcEEEEeeecCCcceeeeccc
Confidence 9 57889999999999999999999999999987
No 2
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=100.00 E-value=1.4e-32 Score=219.18 Aligned_cols=108 Identities=29% Similarity=0.522 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC-CCCcEEEEEcccCCCCCccHHHHHHHHHHHh---
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG-VGNPIIVLDGGIHAREWIAPATVLYVLQQLM--- 134 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~-~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~--- 134 (167)
|++++||.+||++|+++||+++++.+||+|+|||+|++++|+++. ..||.|||.||+|||||+|+++++++++.|+
T Consensus 2 Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EGR~i~~l~i~~~~~~~k~~i~i~~giHarEwi~~~~~~~~i~~Ll~~~ 81 (300)
T cd03872 2 YHPLEEIESWMFYMNKTHSDLVHLFSIGKSYEGRSLYVLKLGKRTRSYKKAVWIDCGIHAREWIGPAFCQWFVKEALNSY 81 (300)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEEecCCCCCCCeEEEecccccccccCHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999865 4799999999999999999999999999999
Q ss_pred -cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 -ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 -~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.|+.++++|++++|+||||+|||||+|+|+.|
T Consensus 82 ~~d~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~ 114 (300)
T cd03872 82 QTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTND 114 (300)
T ss_pred cCChHHHHHHhhCeEEEEeeecCCcceeeeccc
Confidence 46889999999999999999999999998765
No 3
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=100.00 E-value=1.4e-32 Score=219.38 Aligned_cols=111 Identities=33% Similarity=0.604 Sum_probs=105.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh-
Q psy13505 56 ARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM- 134 (167)
Q Consensus 56 ~~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~- 134 (167)
++.|++++||.+||++|+++||+++++.+||+|+|||+|++++|+++.+.||.|+|+|++|||||+++++++++++.|+
T Consensus 3 ~~~Y~~~~ei~~~l~~la~~~p~~v~~~~IG~S~eGR~i~~l~i~~~~~~kp~v~i~~giHarE~i~~~~~l~~i~~l~~ 82 (300)
T cd03871 3 YEKYNNWETIEAWTEQVASENPDLISRSQIGTTFEGRPIYLLKVGKPGVNKPAIFMDCGFHAREWISPAFCQWFVREAVR 82 (300)
T ss_pred ccccCCHHHHHHHHHHHHHHCCCceEEEEeeeCCCCCeeEEEEEccCCCCCCeEEEeccccccccccHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred ---cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 ---ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 ---~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
+|+.++++|++++|+|||++||||++|+++.|
T Consensus 83 ~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~ 117 (300)
T cd03871 83 TYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKN 117 (300)
T ss_pred HccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccC
Confidence 46778999999999999999999999998766
No 4
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.98 E-value=2.6e-32 Score=217.53 Aligned_cols=110 Identities=33% Similarity=0.558 Sum_probs=102.9
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecC-CCCCcEEEEEcccCCCCCccHHHHHHHHHHHh-
Q psy13505 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLM- 134 (167)
Q Consensus 57 ~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~-~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~- 134 (167)
+.|++++||.+||++|+++||+++++.+||+|+|||+|++++|+++ ...||.|||+||+|||||+|+++++++++.|+
T Consensus 2 ~~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EgR~I~~l~i~~~~~~~k~~i~i~~giHarEwi~~~~~l~~i~~Ll~ 81 (298)
T cd06247 2 TKYHPMDEIYNWMDQIKEKYSELVSQHYLGCTYELRPMYYLKIGWPSDKPKKIIWMDCGIHAREWISPAFCQWFVKEILQ 81 (298)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEEeceECcCCceEEEEEeecCCCCCCcEEEEeccccccccccHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999975 35689999999999999999999999999999
Q ss_pred ---cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 ---ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 ---~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.|+.++++|++++|+||||+|||||+|+++.|
T Consensus 82 ~y~~d~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~ 116 (298)
T cd06247 82 NYKTDPILRKVLKNVDFYVLPVLNIDGYIYTWTTD 116 (298)
T ss_pred HhccCHHHHHHHhcCeEEEEeeecCCcceEEeccc
Confidence 46788999999999999999999999998654
No 5
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.97 E-value=5.3e-32 Score=216.24 Aligned_cols=111 Identities=29% Similarity=0.503 Sum_probs=104.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecC-CCCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 56 ARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 56 ~~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~-~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
++.|++++||.+||++|+++||+++++.+||+|+|||+|++++|+++ ...||.|+|.||+|||||+|+++++++++.|+
T Consensus 2 ~~~Y~~~~ei~~~l~~l~~~~p~~v~~~~iG~S~egR~I~~l~is~~~~~~k~~v~i~~giHarE~i~~~~~l~~i~~Ll 81 (300)
T cd06246 2 YEQYHSLNEIYSWIEFITERHSDMLEKIHIGSSFEKRPLYVLKVSGKEQTAKNAIWIDCGIHAREWISPAFCLWFVGHAT 81 (300)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEecccCCCCCeEEEEEEeCCCCCCCCeEEEecccCccchhhHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999875 45799999999999999999999999999999
Q ss_pred ----cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 ----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 ----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.|+.++++|++++|+|+|++||||++|+++.|
T Consensus 82 ~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~ 117 (300)
T cd06246 82 QFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKN 117 (300)
T ss_pred HHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEecc
Confidence 46789999999999999999999999998754
No 6
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.97 E-value=5.3e-32 Score=216.21 Aligned_cols=111 Identities=31% Similarity=0.542 Sum_probs=104.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh-
Q psy13505 56 ARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM- 134 (167)
Q Consensus 56 ~~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~- 134 (167)
+..|++++|+.++|++|+++||+++++++||+|+|||+|++++|+++...||.|+|.||+|||||+|+++++++++.|+
T Consensus 3 ~~~Y~~~~ei~~~l~~L~~~~p~~v~~~~iG~S~eGR~I~~l~is~~~~~kp~v~i~~giHarE~i~~~~~l~~~~~L~~ 82 (301)
T cd03870 3 YATYHTLDEIYDFMDLLVAEHPNLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDAGIHSREWITQATGVWFAKKITE 82 (301)
T ss_pred ccccCCHHHHHHHHHHHHHHCCCceEEEecccCCCCCeEEEEEEecCCCCCceEEEeccccccchhhHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ---cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 ---ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 ---~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.|+.++++|++++|+|||++||||++|+++.|
T Consensus 83 ~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~ 117 (301)
T cd03870 83 DYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQN 117 (301)
T ss_pred hcccCHHHHHHHHhCcEEEEeeecCchhhheeccc
Confidence 46789999999999999999999999998654
No 7
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.97 E-value=3.5e-31 Score=212.10 Aligned_cols=110 Identities=34% Similarity=0.597 Sum_probs=103.0
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC---CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG---VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 57 ~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~---~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
+.|++++|+.+||++|+++||+++++++||+|+|||+|++++|+++. .+||.|+|.||+|||||+|+++++++++.|
T Consensus 2 ~~Y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~I~~~~~~~~~k~~v~i~~giHarE~~~~~~~l~~~~~L 81 (304)
T cd06248 2 DSYHPLEDHLQWLRDLQAAFPNNSELFTIGKSYEGRTILGLHIWGSGGEKGSKPAIVIHGTVHAREWISTMTVEYLAYQL 81 (304)
T ss_pred CccCCHHHHHHHHHHHHHHCCCceEEeceEECCCCCeEEEEEEecCCCCCCCCcEEEEECCcCcCccccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999763 578999999999999999999999999999
Q ss_pred h----cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 134 M----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 134 ~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
+ .|+.++++|++++|+|+|++||||++|+++.|
T Consensus 82 ~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~ 118 (304)
T cd06248 82 LTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSD 118 (304)
T ss_pred HHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccch
Confidence 9 35789999999999999999999999998754
No 8
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.97 E-value=8.4e-31 Score=213.27 Aligned_cols=108 Identities=29% Similarity=0.452 Sum_probs=102.1
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHH
Q psy13505 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQ 132 (167)
Q Consensus 57 ~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~ 132 (167)
..|++++||.++|++|+++||+++++.+||+|+|||+|++|+|+++. .+||.|||.|++|||||+|+++++++++.
T Consensus 2 ~~Y~ty~ei~~~L~~La~~~P~lv~l~~IG~S~EGR~I~~l~Is~~~~~~~~~Kp~I~i~~giHarEwig~~~~l~li~~ 81 (360)
T cd06905 2 SRYYRYDELTAALQAWASAYPQLCSLESIGKSYEGRDIWLLTLTNQATGPDREKPAFWIDANIHATEVTGSAVALYVIQT 81 (360)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEecCCCCCCCCCCcEEEEecCCCCCchHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999998753 46999999999999999999999999999
Q ss_pred Hh----cCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 133 LM----ENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 133 l~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
|+ +|+.++++|++++|+|||++||||++|+++
T Consensus 82 Ll~~y~~d~~i~~lLd~~~~~IvP~vNPDG~e~~~~ 117 (360)
T cd06905 82 LLNGYGSDPEVTRLLDGYTFYILPRLNPDGAEQALT 117 (360)
T ss_pred HHHhccCCHHHHHHHhcCeEEEEeeeCCChheEEee
Confidence 99 368899999999999999999999999987
No 9
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.97 E-value=6.8e-31 Score=214.54 Aligned_cols=108 Identities=25% Similarity=0.420 Sum_probs=101.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 58 FIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 58 ~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
.||+|+||.+||++|+++||+++++.+||+|+|||+|++++|++++ ++||.|++.|++|||||+|+++++++++.|
T Consensus 1 ~Yh~y~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~l~~l~Is~~~~~~~~~kp~v~~~~giHg~E~ig~e~~l~l~~~L 80 (363)
T cd06245 1 RYHHYKELSEFLRGLTLNYPHITNLTSLGQSVEFRPILSLEISNKPNNSEPEEPKIRFVAGIHGNAPVGTELLLALAEFL 80 (363)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCceEEEEEecCCCCCCCCCCCEEEEECCccCCcHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999763 469999999999999999999999999999
Q ss_pred h----cCCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 134 M----ENPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 134 ~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
+ +|+.+++||++++|+|+|++||||++++++.
T Consensus 81 ~~~y~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~ 116 (363)
T cd06245 81 CMNYGKNPAVTKLIDRTRIVIVPSLNPDGREKAQEK 116 (363)
T ss_pred HHHccCCHHHHHHHhCCEEEEEeccCCchHHHeecC
Confidence 9 4678899999999999999999999998864
No 10
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.97 E-value=1.3e-30 Score=213.47 Aligned_cols=108 Identities=23% Similarity=0.394 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++. ++||.|++.|++|||||+|++++++|++.|+
T Consensus 6 ~h~y~ei~~~l~~l~~~~P~i~~l~~IG~S~eGR~I~~l~Is~~~~~~~~~kp~v~~~g~iHg~E~ig~~~~l~li~~L~ 85 (375)
T cd03863 6 HHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLC 85 (375)
T ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEEcccCCccceEEEEEEecCCCcccCCCCeEEEEccccCCcHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999753 4799999999999999999999999999999
Q ss_pred ----cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 ----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 ----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
+|+.++++|++++|+|+|++||||++++++.|
T Consensus 86 ~~y~~d~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~ 121 (375)
T cd03863 86 KNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGD 121 (375)
T ss_pred HhccCCHHHHHHHhCCEEEEEeccCCchHHheecCC
Confidence 47889999999999999999999999998543
No 11
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=99.97 E-value=1.2e-30 Score=214.47 Aligned_cols=108 Identities=22% Similarity=0.374 Sum_probs=100.9
Q ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 58 FIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 58 ~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
.||+|+||.++|++++++||+++++.+||+|+|||+|++++|++++ .+||.|++.|++|||||+|+++++++++.|
T Consensus 4 ~yh~y~em~~~L~~la~~yP~i~~l~sIGkS~EGR~L~~l~Is~~~~~~~~~kP~v~~~g~iHgrE~ig~~~~l~li~~L 83 (405)
T cd03869 4 KHHNYKDMRQLMKVVNEMCPNITRIYNIGKSYQGLKLYAMEISDNPGEHELGEPEFRYVAGMHGNEVLGRELLLLLMQFL 83 (405)
T ss_pred ccCCHHHHHHHHHHHHHHCCCceEEEEeEECcCCceEEEEEEecCCccccCCCCeEEEEcccCCCcHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999999754 368999999999999999999999999999
Q ss_pred h-----cCCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 134 M-----ENPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 134 ~-----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
+ .|+.+++||++++|+|+|++||||++++++.
T Consensus 84 ~~~y~~~d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~ 120 (405)
T cd03869 84 CQEYLAGNPRVVHLVEETRIHLLPSMNPDGYEKAYEA 120 (405)
T ss_pred HHhhhcCCHHHHHHHhcCeEEEEeeeCCchhhhhhhc
Confidence 8 3678999999999999999999999998754
No 12
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.97 E-value=1.7e-30 Score=214.52 Aligned_cols=108 Identities=24% Similarity=0.361 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
||+|+||.+||++|+++||+++++.+||+|+|||+|++++|++++ ..||.|++.|++|||||+|+++++++++.|+
T Consensus 1 y~~y~ei~~~l~~la~~~p~~~~~~~iG~S~EGR~i~~l~is~~~~~~~~~kp~v~i~~giHg~E~ig~~~~~~l~~~L~ 80 (395)
T cd03867 1 HHSYSQMVSVLKRTAARCSHIARTYSIGRSFEGRDLLVIEFSSNPGQHELLEPEVKYIGNMHGNEVLGRELLIYLAQFLC 80 (395)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEccccCCCceEEEEEeccCCCcccccCCeEEEEccccCCcHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999998764 2489999999999999999999999999998
Q ss_pred -----cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 -----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 -----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.|+.++++|++++|+|+|++||||++++++.|
T Consensus 81 ~~~~~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~ 117 (395)
T cd03867 81 SEYLLGNQRIQTLINTTRIHLLPSMNPDGYEAAASEG 117 (395)
T ss_pred HhhhcCCHHHHHHhhCcEEEEEeccCCchHHhhhhcC
Confidence 36778999999999999999999999987544
No 13
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.97 E-value=6e-30 Score=204.43 Aligned_cols=108 Identities=31% Similarity=0.531 Sum_probs=102.0
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC---CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG---VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 57 ~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~---~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
..|++|+||.++|++|+++||+++++++||+|++||+|++++|+++. ..||.|+|+|++||+||+|+++++++++.|
T Consensus 2 ~~y~~y~ei~~~l~~l~~~~p~~v~~~~iG~S~eGR~i~~l~i~~~~~~~~~kp~i~i~~~iH~~E~~g~~~~l~~i~~L 81 (295)
T cd03859 2 RGYHNYLEMVDELNAAAAAYPNLTKVKSIGKSYEGRDIIAVKISDNVATDENKPEVLYTSTHHAREWLSLEMAIYLMHYL 81 (295)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEeeeecCCCCeEEEEEEecCCCCCCCCCEEEEECCcCccchhhHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999864 579999999999999999999999999999
Q ss_pred h----cCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 134 M----ENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 134 ~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
+ .|+.++++|++++|+||||+||||++++++
T Consensus 82 ~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~ 116 (295)
T cd03859 82 LENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDET 116 (295)
T ss_pred HHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEee
Confidence 9 367889999999999999999999999886
No 14
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.96 E-value=3.8e-30 Score=211.37 Aligned_cols=108 Identities=24% Similarity=0.463 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
|++|+||.++|++|+++||+++++.+||+|++||+|++++|+++. +.||.|++.|++|||||+|++++++|++.|+
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~l~~iG~S~eGR~i~~l~is~~~~~~~~~kp~v~~~~~iH~~E~ig~~~~l~l~~~L~ 80 (372)
T cd03868 1 YHHYEELTDLLHSLAKKYPNIARLHSIGRSVEGRELWVLRITDNVNRREPGEPMFKYVGNMHGDETVGRQVLIYLAQYLL 80 (372)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeccccCCCceEEEEEEecCCCCCCCCCCeEEEECCcCCCcHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999763 4699999999999999999999999999999
Q ss_pred ----cCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 ----ENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 ----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
+|+.++++|++++|+|+|++||||++++++.|
T Consensus 81 ~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~ 116 (372)
T cd03868 81 ENYGGDERVTELVNTTDIYLMPSMNPDGFERSQEGD 116 (372)
T ss_pred HhcccCHHHHHHHhCCEEEEEeeeCCchHHhhcccC
Confidence 46788999999999999999999999987543
No 15
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=99.96 E-value=1.4e-29 Score=208.19 Aligned_cols=106 Identities=22% Similarity=0.336 Sum_probs=99.4
Q ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 58 FIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 58 ~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
.||+|+||.++|++++++||+++++.+||+|+|||+|++++|+++. ++||.|+++|++||+||+|+++++++++.|
T Consensus 4 ~Yh~y~e~~~~L~~l~~~~p~i~~l~~IG~S~eGR~I~~l~Is~~~~~~~~~kP~v~i~g~iHg~E~ig~~~~l~l~~~L 83 (402)
T cd03865 4 EYHRYPELREALVSVWLQCPSISRIYTVGRSFEGRELLVIEMSDNPGEHEPGEPEFKYIGNMHGNEAVGRELLIYLAQYL 83 (402)
T ss_pred ccCCHHHHHHHHHHHHHHCCCceEEEecccccCCCeEEEEEeecCCCCCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999753 469999999999999999999999999999
Q ss_pred h-----cCCCchhhhcCceEEEEecccCceeeeee
Q psy13505 134 M-----ENPENFPMFRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 134 ~-----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~ 163 (167)
+ +|+.+++||++++|+|+|++||||+++++
T Consensus 84 ~~~y~~~d~~v~~LLd~~~i~IvP~~NPDG~e~~~ 118 (402)
T cd03865 84 CNEYQKGNETIINLIHSTRIHIMPSLNPDGFEKAA 118 (402)
T ss_pred HHhcccCCHHHHHHHhcCEEEEEeeeCCchHHhhh
Confidence 9 25779999999999999999999999864
No 16
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.96 E-value=3.5e-29 Score=199.95 Aligned_cols=107 Identities=48% Similarity=0.873 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC-CCCcEEEEEcccCCCCCccHHHHHHHHHHHhcC-
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG-VGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN- 136 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~-~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~- 136 (167)
|++|+||.++|++|++++|+++++.++|+|.+||+|++++|+++. +.||.|+|+|++||+|++|+++++++++.|+.+
T Consensus 1 Y~ty~ei~~~l~~l~~~~p~~~~~~~iG~S~egr~i~~l~i~~~~~~~k~~v~i~~~~Hg~E~~g~~~~~~~~~~L~~~~ 80 (294)
T cd03860 1 YHTYDEIYAWLDELAQKYPDLVTVETIGRSYEGRPIKGVKISNGGRSNKPAIFIDAGIHAREWISPATALYIINQLVESY 80 (294)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeeeeCCCCCeEEEEEEecCCCCCCcEEEEECCcCcCccccHHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999999999986 789999999999999999999999999999933
Q ss_pred -CCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 137 -PENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 137 -~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
+.++++|++++|+||||+||||++++++.
T Consensus 81 ~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~ 110 (294)
T cd03860 81 DPEVTDLLDNYDWYILPVANPDGYEYTHTT 110 (294)
T ss_pred CHHHHHHHHcCeEEEEeeecCCchhhhccc
Confidence 47899999999999999999999987653
No 17
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.96 E-value=3.4e-29 Score=205.50 Aligned_cols=105 Identities=21% Similarity=0.407 Sum_probs=99.3
Q ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 58 FIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 58 ~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
.|++++||.+||++|+++||+++++++||+|+|||+|++++|++++ ..||.|++.|++||+||+|+++++++++.|
T Consensus 4 ~Y~~~~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~i~~l~ig~~~~~~~~~~P~v~~~~~iHg~E~ig~~~~l~l~~~L 83 (376)
T cd03866 4 NYHNTEQMEAYLKDVNKNYPSITHLHSIGQSVEGRELWVLVLGRFPREHRIGIPEFKYVANMHGNEVVGRELLLHLIDYL 83 (376)
T ss_pred ccCCHHHHHHHHHHHHHhCCCcEEEEEeeccCCCceEEEEEeccCCccccCCCCeEEEEcccCCCcHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999753 368999999999999999999999999999
Q ss_pred h----cCCCchhhhcCceEEEEecccCceeeee
Q psy13505 134 M----ENPENFPMFRKVDWILIPMLNPDGYVYS 162 (167)
Q Consensus 134 ~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~ 162 (167)
+ +|+.++++|++++|+|+|++||||++++
T Consensus 84 ~~~y~~d~~i~~lL~~~~i~ivP~~NPDG~e~~ 116 (376)
T cd03866 84 VTSYGSDPVITRLLNSTRIHIMPSMNPDGFEAS 116 (376)
T ss_pred HHhcCCCHHHHHHHhCCEEEEEeccCCchhhhc
Confidence 9 4678999999999999999999999997
No 18
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.96 E-value=4.6e-29 Score=205.25 Aligned_cols=107 Identities=24% Similarity=0.422 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
|++|+||.++|++|+++||+++++.+||+|++||+|++++|++++ +.||.|+|+|++||+||+|++++++|++.|+
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~i~~~~~~~~~~kp~v~i~agiH~~E~~g~~~~~~l~~~L~ 80 (374)
T cd03858 1 YHNYAELESFLKEVAANYPNITRLYSIGKSVQGRDLWVLEISDNPGVHEPGEPEFKYVGNMHGNEVVGRELLLRLAQYLC 80 (374)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEcccCCCCCEEEEEEEecCCCCCCCCCceEEEeccccCCchhHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999864 3689999999999999999999999999999
Q ss_pred -----cCCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 135 -----ENPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 135 -----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
+|+.+++||++++|+|+|++||||++++++.
T Consensus 81 ~~~~~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~ 116 (374)
T cd03858 81 ENYGAGDPRITRLVDNTRIHIMPSMNPDGYEKAAEG 116 (374)
T ss_pred HHhccCCHHHHHHHhCCEEEEEcccCCchhhhhccc
Confidence 3678899999999999999999999997654
No 19
>smart00631 Zn_pept Zn_pept.
Probab=99.96 E-value=8e-29 Score=196.42 Aligned_cols=107 Identities=45% Similarity=0.806 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecC-CCCCcEEEEEcccCCCCCccHHHHHHHHHHHhc--
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLME-- 135 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~-~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~-- 135 (167)
|++|+|+.++|++|+++||+++++..||+|.+||+|++++|+++ ...||.|+|+|++||+|++|+++++++++.|+.
T Consensus 1 y~ty~e~~~~l~~l~~~~~~~v~~~~iG~S~~Gr~i~~~~i~~~~~~~k~~v~i~a~~Hg~E~~g~~~~~~~i~~L~~~~ 80 (277)
T smart00631 1 YHSYEEIEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKISDGGSHNKPAIFIDAGIHAREWIGPATALYLINQLLENY 80 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeceecCCCCceEEEEEeCCCCCCCcEEEEECCccccccccHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999988 467999999999999999999999999999992
Q ss_pred --CCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 136 --NPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 136 --~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
|+.++++|++++|+|||++||||++++++.
T Consensus 81 ~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~ 112 (277)
T smart00631 81 GRDPRITKLLDKTDIYIVPVLNPDGYEYTHTG 112 (277)
T ss_pred ccCHHHHHHHHcCcEEEEEeecCchhhheecc
Confidence 677889999999999999999999988754
No 20
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.96 E-value=5.5e-29 Score=204.79 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
+|+|+||.++|++|+++||+++++.+||+|++||+|++++|++++ +.||.|++.|++||+||+|+++++++++.|+
T Consensus 1 ~h~y~em~~~L~~l~~~yP~i~~l~sIG~SveGR~i~~l~is~~~~~~~~~kp~v~~~g~iHg~E~ig~e~ll~l~~~L~ 80 (392)
T cd03864 1 HHRYDDLVRALYAVQNECPYITRIYSIGRSVEGRHLYVLEFSDNPGIHEPLEPEFKYVGNMHGNEVLGRELLIQLSEFLC 80 (392)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeeeccCCceEEEEEecCCCccccCCCCEEEEEcccCCCcHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999864 3589999999999999999999999999999
Q ss_pred -----cCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 135 -----ENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 135 -----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
.|+++++||++++|+|+|++||||++++++
T Consensus 81 ~~y~~~d~~v~~lL~~~~i~ivP~~NPDG~e~~~~ 115 (392)
T cd03864 81 EEYRNGNERITRLIQDTRIHILPSMNPDGYEVAAR 115 (392)
T ss_pred HhcccCCHHHHHHHhcCeEEEEeeeCCchHHhhhc
Confidence 266789999999999999999999998654
No 21
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.95 E-value=5.2e-28 Score=190.75 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=97.3
Q ss_pred hhh-HHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCCC---CCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 59 IER-EFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 59 y~t-~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~---~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
||+ ++||+++|++|+++||+ +++.++|+|++||+|+.++|+.+.. .||.|+|.||+|||||+|++++++|++.|+
T Consensus 2 Yh~~~~ei~~~l~~l~~~~p~-~~~~~ig~S~egr~i~~i~~~~~~~~~~~k~~i~i~agiHarE~i~~~~~l~li~~L~ 80 (272)
T cd06227 2 YHTATDEINEEADALVKNIRL-SRLGELIESVKVRNFSSITLNPNGDPSKKKVKALLLFGEHARELISPETGLHLLSNLC 80 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCC-cEEeeeeeccCCceeeEEEecCCCCCCCCCCEEEEECCccCCchhhHHHHHHHHHHHH
Confidence 788 99999999999999998 8899999999999999999998653 699999999999999999999999999999
Q ss_pred cC--------CCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 135 EN--------PENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 135 ~~--------~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
.+ +.++++|++++|+||||+||||++|+++.
T Consensus 81 ~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~ 119 (272)
T cd06227 81 GELAETFDWGDLLKNILDNFDLKIIPNENPDGRKKVESG 119 (272)
T ss_pred HhcccccchhHHHHHHHhcCcEEEEeccCCchheeEecc
Confidence 21 45799999999999999999999997544
No 22
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=1.4e-27 Score=188.08 Aligned_cols=108 Identities=29% Similarity=0.386 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC-----CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG-----VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~-----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
+.+|+|+.+||++|++++|.+.+++++|+|+|||+|++++|++++ +.||.|||.||+||+||+|+++++++++.|
T Consensus 2 ~t~y~e~~~~l~~La~~~~~i~~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~V~i~~giHg~E~~g~~a~l~ll~~L 81 (268)
T cd06242 2 PTSHEEMESFMKSLASKNDWMSYHSDIGKSEEGRSIPYVYLSTSKSSSSSSKKLRVWLQGGVHGNEPAGDEAALALLGKL 81 (268)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEECccccCCceeEEEEEecCCccccCCCCCEEEEECCcCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999987779999999999999999999764 479999999999999999999999999999
Q ss_pred hcCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 134 MENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 134 ~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
+.++...++|++++|+|+|++||||+++.++.|
T Consensus 82 ~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~R~n 114 (268)
T cd06242 82 DNNPKWASVLEKIDIIVLPRYNPDGSAYFQRTL 114 (268)
T ss_pred HhCchHHHHHhcCeEEEEeccCcchhhhccccC
Confidence 966555689999999999999999999988765
No 23
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.95 E-value=1.2e-27 Score=187.18 Aligned_cols=95 Identities=17% Similarity=0.300 Sum_probs=89.2
Q ss_pred HHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC-----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh-cCCCchhh
Q psy13505 69 LKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG-----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM-ENPENFPM 142 (167)
Q Consensus 69 l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~-----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~-~~~~~~~l 142 (167)
|++|+++||++++.+.||+|++||+|++++|++++ .+||.|||+|++||+||+|++++.++++.|+ +|+.++.|
T Consensus 1 l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~It~~~~~~~~~~k~~I~i~ariHp~E~~~s~~~~~li~~L~~~~~~~~~L 80 (261)
T cd06908 1 LDALEKRSLDYFRREQLGQSVQKRRLDLLTIDSPDNLREDSEKKVIFITARVHPGESPSSYVCQGLIDFLVSNHPIAKVL 80 (261)
T ss_pred ChHHHhhCCCcEEEEEeEEcCCCCeeEEEEEcCCCccccCCCCcEEEEECCcCCCChHHHHHHHHHHHHHhhCCHHHHHH
Confidence 46789999999999999999999999999999863 4799999999999999999999999999999 66788999
Q ss_pred hcCceEEEEecccCceeeeee
Q psy13505 143 FRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 143 l~~~~~~iiP~~NPDG~~~~~ 163 (167)
+++++|+||||+||||+++++
T Consensus 81 ~~~~~~~IvP~~NPDGv~~gn 101 (261)
T cd06908 81 REHLVFKIVPMLNPDGVFLGN 101 (261)
T ss_pred HHhCcEEEEeeecCcceeecC
Confidence 999999999999999999985
No 24
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.94 E-value=8.5e-27 Score=181.31 Aligned_cols=107 Identities=17% Similarity=0.291 Sum_probs=95.8
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcC
Q psy13505 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN 136 (167)
Q Consensus 57 ~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~ 136 (167)
.+..+.+++.+||++|++. +++++.++|+|++||||++++|++++ +||.|+|.|++||+|++|+.++++|++.|+.+
T Consensus 5 ~~~~~~~~i~~~l~~L~~~--~~v~~~~iG~S~eGR~i~~l~ig~~~-~k~~v~i~~~iH~~E~~g~~~~~~~~~~l~~~ 81 (244)
T cd06237 5 QELIDNQDVKDWVDSLIKQ--PFVELELLGLSTQGRPLKALERGNPD-SKEWIVVISRQHPPEVTGALAMKAFIETLLSD 81 (244)
T ss_pred eeeCCHHHHHHHHHHHhcC--CCeEEEEeeEcCCCCEEEEEEecCCC-CCceEEEEcCcCCCcHHHHHHHHHHHHHHHhC
Confidence 3457899999999999765 58999999999999999999998665 68999999999999999999999999999954
Q ss_pred C-CchhhhcCceEEEEecccCceeeee-eecC
Q psy13505 137 P-ENFPMFRKVDWILIPMLNPDGYVYS-MTKD 166 (167)
Q Consensus 137 ~-~~~~ll~~~~~~iiP~~NPDG~~~~-~~~~ 166 (167)
. .++++|++++|+|+||+||||++++ |+.|
T Consensus 82 ~~~~~~ll~~~~i~ivP~~NPDG~~~~~wR~N 113 (244)
T cd06237 82 SELAKKFRAKYNVLLVPNMNPDGVDLGHWRHN 113 (244)
T ss_pred CHHHHHHHHhCEEEEEEeeCcchhhcCCccCC
Confidence 4 4689999999999999999999986 4665
No 25
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.94 E-value=4.4e-27 Score=186.45 Aligned_cols=99 Identities=39% Similarity=0.789 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecC----CCCCcEEEEEcccCCCCCccHHHHHHHHHHHhc---CC
Q psy13505 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGIHAREWIAPATVLYVLQQLME---NP 137 (167)
Q Consensus 65 i~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~----~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~---~~ 137 (167)
|+++|++|++++|+++++.+||+|.+||+|++++|+++ .++||.|+|+||+||+|++|+++++++++.|+. |+
T Consensus 1 i~~~l~~l~~~~p~~v~~~~iG~S~~Gr~i~~~~i~~~~~~~~~~k~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~~~~ 80 (279)
T PF00246_consen 1 INAYLDALAARYPDIVRLESIGKSYEGRPIYALTIGSNSNGSDPGKPTVLIIAGIHGNEWIGSEALLYLIEELLSGYDDP 80 (279)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEESSSTTTTSTTSEEEEEEE-SSTT-THHHHHHHHHHHHHHHHTTSH
T ss_pred CHHHHHHHHHHCCCcEEEEEeeECCCCCeEEEEEeecccccccccccceEEEecccccccCchHHHHHHHHHhhccccch
Confidence 68899999999999999999999999999999999986 478999999999999999999999999999993 78
Q ss_pred CchhhhcCceEEEEecccCceeeeee
Q psy13505 138 ENFPMFRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 138 ~~~~ll~~~~~~iiP~~NPDG~~~~~ 163 (167)
.++.||++++|+||||+||||+++.+
T Consensus 81 ~~~~ll~~~~i~iiP~~NPDG~~~~~ 106 (279)
T PF00246_consen 81 EVKELLDNVVIYIIPMVNPDGYEYGT 106 (279)
T ss_dssp HHHHHHHHEEEEEES-SSHHHHHHHH
T ss_pred hhhhhcccceEEEEeeecccceeeee
Confidence 89999999999999999999999887
No 26
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.93 E-value=3.1e-26 Score=179.62 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh--cC
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM--EN 136 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~--~~ 136 (167)
.++++++.++++.+++. ..+++.++|+|++||+|++++|+++.++||.|||.||+||+|+.|..++..+++.|+ .|
T Consensus 10 Pys~~~~~~~l~~~~~~--~~v~~~~iG~S~eGR~i~~l~I~~~~~~k~~V~i~a~iH~~E~~g~~~~~~ll~~L~~~~d 87 (263)
T cd06234 10 PYSYERHLALIARAQGA--PDVRLEVLGQTVQGRDIDLLTFGEPGPGKKKLWIIARQHPGETMAEWFMEGLLERLLDPDD 87 (263)
T ss_pred CCCHHHHHHHHHHHhcC--CCeEEEEEEEcCCCCeEEEEEEccCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHhhcCC
Confidence 47899999999999874 379999999999999999999998777899999999999999999999999999999 56
Q ss_pred CCchhhhcCceEEEEecccCceeeeee
Q psy13505 137 PENFPMFRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 137 ~~~~~ll~~~~~~iiP~~NPDG~~~~~ 163 (167)
+.++++|++++|+|||++||||+++++
T Consensus 88 ~~~~~ll~~~~~~IvP~~NPDG~~~g~ 114 (263)
T cd06234 88 AVARALLEKAVFYVVPNMNPDGSARGH 114 (263)
T ss_pred HHHHHHHhcCEEEEEeeecchhhhhcC
Confidence 788999999999999999999999875
No 27
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.92 E-value=1.8e-25 Score=177.85 Aligned_cols=89 Identities=25% Similarity=0.453 Sum_probs=83.1
Q ss_pred cCCcEEEEEecccc------CCeeeEEEEEecCC-----CCCcEEEEEcccCCCCCccHHHHHHHHHHHh----cCCCch
Q psy13505 76 YGHKVNVSTIGETI------EGRPIQAVKISHGG-----VGNPIIVLDGGIHAREWIAPATVLYVLQQLM----ENPENF 140 (167)
Q Consensus 76 ~p~~~~~~~ig~S~------~gr~i~~~~i~~~~-----~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~----~~~~~~ 140 (167)
||+++++.+||+|+ +||+|++|+|+++. .+||.|+|.|++|||||+|+++++++++.|+ .|+.++
T Consensus 1 ~p~~~~~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~~~~~~kp~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~v~ 80 (293)
T cd06226 1 YPNLAQWVDIGDSWDKPGGPAGYDIRALKLTNKATNSPTGPKPVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDADAT 80 (293)
T ss_pred CCcceEEEEeeEecccCcccCCceEEEEEEecCCCCcCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 69999999999999 99999999999864 4799999999999999999999999999999 367889
Q ss_pred hhhcCceEEEEecccCceeeeeee
Q psy13505 141 PMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 141 ~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
++|++++|+||||+||||++++++
T Consensus 81 ~lL~~~~i~ivP~~NPDG~~~~~~ 104 (293)
T cd06226 81 WLLDYHEIHVVPIVNPDGRKIAEQ 104 (293)
T ss_pred HHHhcCeEEEEecccCCcceeecc
Confidence 999999999999999999998753
No 28
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.91 E-value=3.6e-24 Score=168.83 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh-cCCC
Q psy13505 60 EREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM-ENPE 138 (167)
Q Consensus 60 ~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~-~~~~ 138 (167)
.+|.+....++.++ |+.+++.+||+|.+||+|++++++.+ .+||.|||+|++||+||+|+++++++++.|+ +++.
T Consensus 11 ~~y~~~~~l~~sl~---~~~v~l~~IG~s~egr~i~~~~~~~~-~~k~~i~i~a~iH~~E~~~~~~~~~li~~Ll~~~~~ 86 (269)
T cd03856 11 QIYDRRLALCESLQ---GNSCDLLTITSPPEGNDIKYEHLCSF-ANKKYIFLIARVHPGETNASWVMKGFLEFLLSDNPT 86 (269)
T ss_pred cCHHHHHHHHHHhc---CCceeEEEeccCCCCccccceeccCC-CCCcEEEEEcCcCCCchHHHHHHHHHHHHHHhCCHH
Confidence 45777888888886 66899999999999999999998764 4899999999999999999999999999999 5556
Q ss_pred chhhhcCceEEEEecccCceeeeee-ecC
Q psy13505 139 NFPMFRKVDWILIPMLNPDGYVYSM-TKD 166 (167)
Q Consensus 139 ~~~ll~~~~~~iiP~~NPDG~~~~~-~~~ 166 (167)
++++|++++|+||||+||||+++++ +.|
T Consensus 87 ~~~ll~~~~~~ivP~~NPDG~~~g~~R~n 115 (269)
T cd03856 87 AQSLRESFVFKIVPMLNPDGVIRGNYRCS 115 (269)
T ss_pred HHHHHhcCeEEEEeeeCCccccccCCcCC
Confidence 8999999999999999999999873 544
No 29
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.90 E-value=8.7e-24 Score=166.42 Aligned_cols=94 Identities=29% Similarity=0.538 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC---------CCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCC
Q psy13505 67 SYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG---------VGNPIIVLDGGIHAREWIAPATVLYVLQQLMENP 137 (167)
Q Consensus 67 ~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~---------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~ 137 (167)
+|+++|++.+| .+++++||+|.+||+|++++|+.+. .+||.|||+||+||+|+.|+++++.+++.|+...
T Consensus 1 a~~~~La~~~~-~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~~~~~kp~v~i~agiH~~E~~G~~a~~~ll~~L~~~~ 79 (266)
T cd06241 1 AFLERLAAASP-LIRLESFGKTPEGRPLHLLVLSKDGAFTPEEAKRSGKPVVLVQAGIHAGEIDGKDAGLMLLRDLADGK 79 (266)
T ss_pred CHHHHHHHhCC-ceEEEEeEeCCCCCeeEEEEEecCCccchhhhcccCCCEEEEeCCcCCCCchHHHHHHHHHHHHHhcc
Confidence 47899999986 7999999999999999999999764 5799999999999999999999999999999333
Q ss_pred CchhhhcCceEEEEecccCceeeee
Q psy13505 138 ENFPMFRKVDWILIPMLNPDGYVYS 162 (167)
Q Consensus 138 ~~~~ll~~~~~~iiP~~NPDG~~~~ 162 (167)
. .++|++++|+|||++||||+++.
T Consensus 80 ~-~~ll~~~~i~ivP~~NpDG~~~~ 103 (266)
T cd06241 80 K-DALLDKVVLVFIPVFNVDGHERR 103 (266)
T ss_pred h-HHHHhCCEEEEEeCCCccHHHhc
Confidence 2 28999999999999999999865
No 30
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.90 E-value=5.8e-24 Score=165.81 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=80.4
Q ss_pred CCcEEEEEeccccCCeeeEEEEEecCC------CCCcEEEEEcccCCCCCccHHHHHHHHHHHh-cCCCchhhhcCceEE
Q psy13505 77 GHKVNVSTIGETIEGRPIQAVKISHGG------VGNPIIVLDGGIHAREWIAPATVLYVLQQLM-ENPENFPMFRKVDWI 149 (167)
Q Consensus 77 p~~~~~~~ig~S~~gr~i~~~~i~~~~------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~-~~~~~~~ll~~~~~~ 149 (167)
+++++.+.+|+|++||+|++++|++.. .+||.|||+|++||+|+.+++++..+++.|+ +++.++.++++++|+
T Consensus 11 ~~~~~~~~lg~S~eGR~i~~LtIt~~~~~~~~~~~K~~I~I~ariHp~E~~~s~~~~gll~~L~~~~~~a~~Lr~~~~f~ 90 (261)
T cd06907 11 SKFCKLRVLCRTLAGNTVYLLTITSPSSNPSLAAAKKAVVLTARVHPGETNASWMMKGFLDFLTSNSPDAQLLRDTFIFK 90 (261)
T ss_pred CCceEEEEEEECCCCCeeeEEEEcCCCccccccCCCCEEEEECCcCCChHHHHHHHHHHHHHHhcCCHHHHHHHhcCCEE
Confidence 458999999999999999999998753 3699999999999999999999999999999 667889999999999
Q ss_pred EEecccCceeeeee
Q psy13505 150 LIPMLNPDGYVYSM 163 (167)
Q Consensus 150 iiP~~NPDG~~~~~ 163 (167)
||||+||||+.+++
T Consensus 91 IvPmlNPDGv~~G~ 104 (261)
T cd06907 91 IVPMLNPDGVIVGN 104 (261)
T ss_pred EEEeecCccccccC
Confidence 99999999999885
No 31
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.90 E-value=1e-23 Score=165.52 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=80.4
Q ss_pred cCCcEEEEEeccccCCeeeEEEEEecCC------CCCcEEEEEcccCCCCCccHHHHHHHHHHHh-cCCCchhhhcCceE
Q psy13505 76 YGHKVNVSTIGETIEGRPIQAVKISHGG------VGNPIIVLDGGIHAREWIAPATVLYVLQQLM-ENPENFPMFRKVDW 148 (167)
Q Consensus 76 ~p~~~~~~~ig~S~~gr~i~~~~i~~~~------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~-~~~~~~~ll~~~~~ 148 (167)
.+.+++++.+|+|.+||+|++++|++.. .+||.|+|+||+||+|++|+++++++++.|+ .++.++.|+++++|
T Consensus 9 ~~~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~k~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~~~~~~~~Ll~~~~~ 88 (258)
T cd06235 9 NNQYLKRKILCTTLGGLPVPLLTITSPSSKSIPIKKKKVIVITARQHPGETNSSFVMQGFIDFLLSDSPEAQYLRENFIF 88 (258)
T ss_pred CCCceEEEEeEEcCCCCeeeEEEEeCCcccccccCCCcEEEEECCcCCCChHHHHHHHHHHHHHhcCCHHHHHHHhccEE
Confidence 5678999999999999999999999753 5799999999999999999999999999999 55678999999999
Q ss_pred EEEecccCceeeee
Q psy13505 149 ILIPMLNPDGYVYS 162 (167)
Q Consensus 149 ~iiP~~NPDG~~~~ 162 (167)
+||||+||||++++
T Consensus 89 ~iiPm~NPDG~~~g 102 (258)
T cd06235 89 KIIPMLNPDGVIHG 102 (258)
T ss_pred EEEccccccceeec
Confidence 99999999999875
No 32
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.90 E-value=9.9e-24 Score=162.62 Aligned_cols=93 Identities=31% Similarity=0.458 Sum_probs=83.5
Q ss_pred HHHHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcC--CCchhhhcCceEE
Q psy13505 72 IARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMEN--PENFPMFRKVDWI 149 (167)
Q Consensus 72 l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~--~~~~~ll~~~~~~ 149 (167)
+.+++|+.++++.+|+|++||||++++|++ +||.|+|+|++||+|+.|++++++|++.|+.+ +.++++|++++|+
T Consensus 2 ~~~~~p~~v~~~~iG~S~eGrpI~~l~ig~---g~~~vli~agiHG~E~~g~~all~ll~~L~~~~~~~~~~ll~~~~v~ 78 (231)
T cd06239 2 LLEKLPAKFKVEVIGKSVEGRPIYSVKFGS---GKIKILLWSQMHGNESTTTKALLDLLNFLGTSKDQEAKKILDEVTLV 78 (231)
T ss_pred hHHHCCCeeEEEEeeECCCCCeEEEEEEcC---CCcEEEEEeccCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCCEEE
Confidence 457899999999999999999999999998 45999999999999999999999999999933 3347999999999
Q ss_pred EEecccCceeeeeeecCC
Q psy13505 150 LIPMLNPDGYVYSMTKDV 167 (167)
Q Consensus 150 iiP~~NPDG~~~~~~~~~ 167 (167)
||||+||||++..++.|+
T Consensus 79 iiP~lNPDG~~~~~R~N~ 96 (231)
T cd06239 79 IIPMLNPDGAEAYTRVNA 96 (231)
T ss_pred EEeccCccHHHHcccCCC
Confidence 999999999987666653
No 33
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.89 E-value=1.5e-23 Score=166.72 Aligned_cols=85 Identities=26% Similarity=0.423 Sum_probs=79.0
Q ss_pred cEEEEEeccccCCeeeEEEEEecCC-------------------------CCCcEEEEEcccCCCCCccHHHHHHHHHHH
Q psy13505 79 KVNVSTIGETIEGRPIQAVKISHGG-------------------------VGNPIIVLDGGIHAREWIAPATVLYVLQQL 133 (167)
Q Consensus 79 ~~~~~~ig~S~~gr~i~~~~i~~~~-------------------------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l 133 (167)
+++.+.+|+|.|||+|++++|++.. .+||.|||+|++||+||+|++++++++++|
T Consensus 15 y~~~~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~~~s~~~~~ll~~L 94 (304)
T cd06236 15 YYHREVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGETPSSFVFNGFLKFL 94 (304)
T ss_pred EEEEEEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCchHHHHHHHHHHHH
Confidence 6889999999999999999999753 369999999999999999999999999999
Q ss_pred h--cCCCchhhhcCceEEEEecccCceeeeee
Q psy13505 134 M--ENPENFPMFRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 134 ~--~~~~~~~ll~~~~~~iiP~~NPDG~~~~~ 163 (167)
+ .|+.++.|+++++|+||||+||||+++++
T Consensus 95 l~~~d~~a~~L~~~~~~~IvPmlNPDGv~~g~ 126 (304)
T cd06236 95 LNKDDPRAALLRRRFVFKLIPMLNPDGVYRGH 126 (304)
T ss_pred HhCCCHHHHHHHhCCeEEEEEeEcccccccCc
Confidence 9 47788999999999999999999999877
No 34
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.89 E-value=2e-23 Score=167.90 Aligned_cols=82 Identities=27% Similarity=0.473 Sum_probs=74.3
Q ss_pred EeccccCCeeeEEEEEecCC-CCCcEEEEEcccCCCCCccHHHHHHHHHHHhc----------------CCCchhhhcCc
Q psy13505 84 TIGETIEGRPIQAVKISHGG-VGNPIIVLDGGIHAREWIAPATVLYVLQQLME----------------NPENFPMFRKV 146 (167)
Q Consensus 84 ~ig~S~~gr~i~~~~i~~~~-~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~----------------~~~~~~ll~~~ 146 (167)
.-++|+|||+|++|+|+.+. .+||.|||.|++|||||++++++++|++.|+. |+.++++|+ +
T Consensus 5 ~~~~S~EgR~I~~l~I~~~~~~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~lL~-~ 83 (332)
T cd06228 5 LPHKTYEGRTPHGAKIGAGTLTSRYGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKAILD-A 83 (332)
T ss_pred CCCCCCCCCeeEEEEEeCCCCCCCCEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHHHHh-C
Confidence 34899999999999999864 67999999999999999999999999999992 456799999 9
Q ss_pred eEEEEecccCceeeeeeecC
Q psy13505 147 DWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 147 ~~~iiP~~NPDG~~~~~~~~ 166 (167)
+|+||||+|||||+|+|+.|
T Consensus 84 ~i~IvP~vNPDGy~~s~~~~ 103 (332)
T cd06228 84 GIVVFPLVNPDGRAHDQTAN 103 (332)
T ss_pred eEEEEEeecCcchhheeccc
Confidence 99999999999999998654
No 35
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.87 E-value=2.2e-22 Score=157.69 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=84.6
Q ss_pred HHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC-----------CCCcEEEEEcccCCCCCccHHHHHHHHHHHh-cC
Q psy13505 69 LKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG-----------VGNPIIVLDGGIHAREWIAPATVLYVLQQLM-EN 136 (167)
Q Consensus 69 l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~-----------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~-~~ 136 (167)
|+......+.+++.+.+|+|.+||++.+++|++.+ .+||.|||+|++||+|..|++++..+++.|+ +|
T Consensus 4 l~~~~~~~~~y~~~~~Lc~Tl~G~~v~lltIt~~~~~~~~~~~~~~~~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~~d 83 (278)
T cd06906 4 LESLHDPQQIYFRQQVLCETLGGNSCPLLTITAMPESNYYEHICQFRNRPYIFLSARVHPGETNASWVMKGTLEFLMSSS 83 (278)
T ss_pred HhhhcCCcccEEeeecceeccCCCceeEEEEeCCCccccccccccccCCcEEEEEcccCCCcchHHHHHHHHHHHHhCCC
Confidence 44444444567999999999999999999999842 3689999999999999999999999999999 67
Q ss_pred CCchhhhcCceEEEEecccCceeeeee
Q psy13505 137 PENFPMFRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 137 ~~~~~ll~~~~~~iiP~~NPDG~~~~~ 163 (167)
+.++.|+++++|+||||+||||+.+++
T Consensus 84 ~~a~~Lr~~~~f~IvPmlNPDGvv~Gn 110 (278)
T cd06906 84 PTAQSLRESYIFKIVPMLNPDGVINGN 110 (278)
T ss_pred HHHHHHHHhCcEEEEeeecCccceecc
Confidence 889999999999999999999999876
No 36
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.86 E-value=3.9e-22 Score=154.34 Aligned_cols=83 Identities=27% Similarity=0.512 Sum_probs=76.5
Q ss_pred eccccCCeeeEEEEEecCC-------CCCcEEEEEcccCCCCCccHHHHHHHHHHHh--cCCCchhhhcCceEEEEeccc
Q psy13505 85 IGETIEGRPIQAVKISHGG-------VGNPIIVLDGGIHAREWIAPATVLYVLQQLM--ENPENFPMFRKVDWILIPMLN 155 (167)
Q Consensus 85 ig~S~~gr~i~~~~i~~~~-------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~--~~~~~~~ll~~~~~~iiP~~N 155 (167)
+|+|+|||||++++|+++. .+||.|++++++||+|+.|+++++.+++.|+ +++.++++|++.+|+|+|++|
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~~~~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~~~~~~~~~lL~~~~i~ivP~~N 80 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSALDIANRPTVLLVGTQHGDEPAGREALLIIARDLAFGEDEELVPLLHQTTVLFVPTAN 80 (236)
T ss_pred CccCCCCCeeEEEEEecCCCccccccCCCCEEEEECCcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHhcceEEEEeCcC
Confidence 6999999999999999875 3689999999999999999999999999999 566789999999999999999
Q ss_pred CceeeeeeecCC
Q psy13505 156 PDGYVYSMTKDV 167 (167)
Q Consensus 156 PDG~~~~~~~~~ 167 (167)
|||+++..+.|+
T Consensus 81 PDG~~~~~R~n~ 92 (236)
T cd06243 81 PDGREADTRSNA 92 (236)
T ss_pred ccHhhcCCcCCC
Confidence 999998887763
No 37
>KOG2649|consensus
Probab=99.86 E-value=1e-21 Score=161.44 Aligned_cols=110 Identities=21% Similarity=0.340 Sum_probs=103.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHcCCcEEEEEeccccCCeeeEEEEEecCC----CCCcEEEEEcccCCCCCccHHHHHHHH
Q psy13505 55 FARFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREWIAPATVLYVL 130 (167)
Q Consensus 55 ~~~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~----~~k~~v~i~~~~H~~E~~~~~~~~~~~ 130 (167)
..-.+|+|++|.++|+++++++|.+.++.+||+|++||++++++|++.+ ..+|.+-++|++||+|.+|-+.+++++
T Consensus 65 l~f~hh~y~~m~~~l~~~~~~~p~itrlYSiGkSv~Gr~L~Vle~sd~PgeH~~gePEfKyv~nmHGnE~vGRElll~L~ 144 (500)
T KOG2649|consen 65 LTFGHHNYDDLEKALKDFTKRCPNITRLYSIGKSVEGRELWVIEISDRPGEHEPGEPEFKYIGNMHGNEVVGRELLLRLA 144 (500)
T ss_pred ccCCCCCHHHHHHHHHHHHhhCCcceeeeeccccccCceEEEEEcCCCCCcccCCCCcceeeeeccccccccHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999885 579999999999999999999999999
Q ss_pred HHHh----cCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 131 QQLM----ENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 131 ~~l~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
++|+ +|+++++|++++.|+|+|.+|||||+..-.
T Consensus 145 e~Lc~~y~~n~~i~~Lv~~trIHlmPSmNPDGyE~a~~ 182 (500)
T KOG2649|consen 145 EYLCDNYGKDPRITQLVNNTRIHIMPSMNPDGYEIAKR 182 (500)
T ss_pred HHHHHhcCCChHHHHHHhhceEEEecccCcchhhhhhc
Confidence 9999 789999999999999999999999986543
No 38
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.85 E-value=2.2e-21 Score=152.26 Aligned_cols=75 Identities=25% Similarity=0.507 Sum_probs=68.4
Q ss_pred ccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh----c-----CCCchhhhcCceEEEEecccCce
Q psy13505 88 TIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM----E-----NPENFPMFRKVDWILIPMLNPDG 158 (167)
Q Consensus 88 S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~----~-----~~~~~~ll~~~~~~iiP~~NPDG 158 (167)
|++||+|++++|++++ |.|+|.|++|||||+|+.+++++++.|+ . +..+++||++++|+||||+||||
T Consensus 1 S~eGR~I~~~~ig~~~---~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG 77 (255)
T cd06229 1 SVLGRDIYEVKLGNGP---KTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFVPMVNPDG 77 (255)
T ss_pred CCCCceeeEEEEcCCC---ceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEEeCccCCc
Confidence 7899999999999865 9999999999999999999999999999 2 23468999999999999999999
Q ss_pred eeeeeec
Q psy13505 159 YVYSMTK 165 (167)
Q Consensus 159 ~~~~~~~ 165 (167)
++++++.
T Consensus 78 ~~~~~~~ 84 (255)
T cd06229 78 VEIVQNG 84 (255)
T ss_pred hheeeec
Confidence 9998863
No 39
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.85 E-value=9.6e-22 Score=154.74 Aligned_cols=81 Identities=35% Similarity=0.559 Sum_probs=74.4
Q ss_pred EEEEeccccCCeeeEEEEEecCC-------------------------------CCCcEEEEEcccCCCCCccHHHHHHH
Q psy13505 81 NVSTIGETIEGRPIQAVKISHGG-------------------------------VGNPIIVLDGGIHAREWIAPATVLYV 129 (167)
Q Consensus 81 ~~~~ig~S~~gr~i~~~~i~~~~-------------------------------~~k~~v~i~~~~H~~E~~~~~~~~~~ 129 (167)
+++++|+|+|||+|++++|++.. ..||.|||.+++||+|++|+++++++
T Consensus 1 ~l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~~g~ea~l~l 80 (273)
T cd06240 1 KLVEIGKTEEGRPQIMAAISSPENLAKLDHYKAILRKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTETGGPQMLMEL 80 (273)
T ss_pred CeeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHHhhhhccccccchhhhhhhccCCCEEEEECCcCCCchHHHHHHHHH
Confidence 47899999999999999999642 24899999999999999999999999
Q ss_pred HHHHh--cCCCchhhhcCceEEEEecccCceeee
Q psy13505 130 LQQLM--ENPENFPMFRKVDWILIPMLNPDGYVY 161 (167)
Q Consensus 130 ~~~l~--~~~~~~~ll~~~~~~iiP~~NPDG~~~ 161 (167)
++.|+ +|+.++++|++++|+|+|++||||++.
T Consensus 81 ~~~L~~~~d~~~~~lLd~~~i~i~P~~NPDG~er 114 (273)
T cd06240 81 AYRLATEEDPEIKRILDNVIVLIVPVANPDGRDR 114 (273)
T ss_pred HHHHHhcCCHHHHHHHhcCEEEEEeCcCCCHHHH
Confidence 99999 578899999999999999999999975
No 40
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.85 E-value=2e-21 Score=147.98 Aligned_cols=72 Identities=25% Similarity=0.384 Sum_probs=66.0
Q ss_pred ccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeee--
Q psy13505 86 GETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSM-- 163 (167)
Q Consensus 86 g~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~-- 163 (167)
-+|+|||+|.+++| .++||.|||+||+||+||+|+.++++|++.|+. +++++|+|+||+|||||+|.+
T Consensus 21 a~S~EGR~I~~l~i---~~~Kp~I~I~gGvHarEwig~~~al~fi~~L~~-------~~~~n~~I~P~vNPDGYe~~~~L 90 (240)
T cd06232 21 ARSRQGRPVTGRYV---AGLDHPVVISAGQHANETSGVVGALRAAEALAA-------RPGAHFALIPLENPDGYALHERL 90 (240)
T ss_pred ccccCCCeeeEEEe---cCCCcEEEEeCCcCCCcchhHHHHHHHHHHHhc-------cCCceEEEEEeeCCcHHHhhchh
Confidence 47999999999999 346899999999999999999999999999993 789999999999999999987
Q ss_pred -ecCC
Q psy13505 164 -TKDV 167 (167)
Q Consensus 164 -~~~~ 167 (167)
+.||
T Consensus 91 ~r~nP 95 (240)
T cd06232 91 RAEHP 95 (240)
T ss_pred hccCc
Confidence 6665
No 41
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.84 E-value=3.2e-21 Score=148.79 Aligned_cols=83 Identities=31% Similarity=0.540 Sum_probs=74.5
Q ss_pred eccccCCeeeEEEEEecCCC---------CCcEEEEEcccCCCCCccHHHHHHHHHHHh-cCCCchhhhcCceEEEEecc
Q psy13505 85 IGETIEGRPIQAVKISHGGV---------GNPIIVLDGGIHAREWIAPATVLYVLQQLM-ENPENFPMFRKVDWILIPML 154 (167)
Q Consensus 85 ig~S~~gr~i~~~~i~~~~~---------~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~-~~~~~~~ll~~~~~~iiP~~ 154 (167)
||+|.|||||++++|+++.. +||.|+|.||+||+|+.|+++++.+++.|+ ++...+++|++++|+|+|++
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~~~~~~~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~~~~~~~~ll~~~~i~ivP~~ 80 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKRALAKEGKPRVWIDAQIHGNESAGSDALLELLRQLASASDEEAKMLENIVIVLIPRA 80 (226)
T ss_pred CccCCCCCeEEEEEEeCCccccccccccCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCHHHHHHHhCCEEEEEecc
Confidence 69999999999999998542 689999999999999999999999999999 44445789999999999999
Q ss_pred cCceeeeeeecCC
Q psy13505 155 NPDGYVYSMTKDV 167 (167)
Q Consensus 155 NPDG~~~~~~~~~ 167 (167)
||||+++.++.|+
T Consensus 81 NPDG~~~~~R~n~ 93 (226)
T cd03857 81 NPDGAALFTRENA 93 (226)
T ss_pred CCChHHhccccCC
Confidence 9999998877763
No 42
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.82 E-value=8.9e-21 Score=149.48 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=70.3
Q ss_pred eccccCCeeeEEEEEecCC-----------------C---------CCcEEEEEcccCCCCCccHHHHHHHHHHHh--cC
Q psy13505 85 IGETIEGRPIQAVKISHGG-----------------V---------GNPIIVLDGGIHAREWIAPATVLYVLQQLM--EN 136 (167)
Q Consensus 85 ig~S~~gr~i~~~~i~~~~-----------------~---------~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~--~~ 136 (167)
+|+|.|||+|.+++|++.. + .||.|||.+++||+||+|+++++++++.|+ .+
T Consensus 1 ~G~s~egR~l~~~~I~s~~n~~~l~~~~~~~~~la~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~~~ 80 (271)
T cd06238 1 YGRTHEGRPLLLATITSPENIARLDQIREDHLALADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAAQG 80 (271)
T ss_pred CCcCCCCCeeEEEEEeCHHHHHhHHHHHHHHHHhcCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHcCC
Confidence 5999999999999999862 1 478999999999999999999999999999 56
Q ss_pred CCchhhhcCceEEEEecccCceee
Q psy13505 137 PENFPMFRKVDWILIPMLNPDGYV 160 (167)
Q Consensus 137 ~~~~~ll~~~~~~iiP~~NPDG~~ 160 (167)
+.++++|++++|+|+|++||||++
T Consensus 81 ~~~~~ll~~~~i~i~P~~NPDG~~ 104 (271)
T cd06238 81 DEIEALLDNAVVLIDPMQNPDGRD 104 (271)
T ss_pred HHHHHHHhcCEEEEEeccCCCHHH
Confidence 778999999999999999999998
No 43
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.80 E-value=7.1e-20 Score=143.19 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=74.1
Q ss_pred eccccCCeeeEEEEEecCC------------------------------CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 85 IGETIEGRPIQAVKISHGG------------------------------VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 85 ig~S~~gr~i~~~~i~~~~------------------------------~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
||+|.|||+++++.|++.. ..|+.|++.+++||+|+.|+++++.+++.|+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~ 80 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDETPGIDAQTELIEELA 80 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 6999999999999999873 2477888889999999999999999999999
Q ss_pred --c----------------CCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 135 --E----------------NPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 135 --~----------------~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
. ++.+++||++++|+|+|++||||+++..+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~~~R~N 130 (268)
T cd06244 81 QEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVAGTREN 130 (268)
T ss_pred hcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCcceeeeecC
Confidence 2 5678999999999999999999999988776
No 44
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.75 E-value=1.8e-18 Score=136.56 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=71.5
Q ss_pred CCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh----cCCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 90 EGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM----ENPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 90 ~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~----~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
...||++++|+++.++||.|+|+||+||+||+|+.+++++++.|+ .|+.++++|++++|+|||++||||+...++.
T Consensus 8 ~~~pi~~v~ig~~~~~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG~~~~~R~ 87 (273)
T cd03862 8 LRFPIYALELGSPDPKAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVGMALKTRS 87 (273)
T ss_pred CcceeEEEEecCCCCCCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCHHHhcccC
Confidence 468999999998888899999999999999999999999999999 3677899999999999999999999888877
Q ss_pred CC
Q psy13505 166 DV 167 (167)
Q Consensus 166 ~~ 167 (167)
|+
T Consensus 88 n~ 89 (273)
T cd03862 88 NG 89 (273)
T ss_pred CC
Confidence 64
No 45
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.74 E-value=6.3e-18 Score=131.00 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=76.4
Q ss_pred cEEEEEeccccC-CeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCc
Q psy13505 79 KVNVSTIGETIE-GRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPD 157 (167)
Q Consensus 79 ~~~~~~ig~S~~-gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPD 157 (167)
.++++.+|+... +++|+++++...+++||.|+|+||+||+|+.|+++++.|++.+. ..++++++|+|+||+|||
T Consensus 14 ~~~~~~~g~~~~~~~pL~~l~~~~~~~~~p~vlI~gGiHG~E~~G~~a~l~~l~~l~-----~~~l~~~~i~ivP~vNPd 88 (236)
T cd06231 14 RLDVREYGQLAYQSYPLYALKSRGWDSDLPRVLITAGIHGDEPAGPLGALEFLRAAA-----LELAQDVNLSVYPCINPS 88 (236)
T ss_pred ceEEEEccccccCCeeEEEEEcCCCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHH-----HHHhcCCeEEEEECcChh
Confidence 378899998766 99999999988777899999999999999999999999999997 457899999999999999
Q ss_pred eeeeeeecCC
Q psy13505 158 GYVYSMTKDV 167 (167)
Q Consensus 158 G~~~~~~~~~ 167 (167)
|++..++.|+
T Consensus 89 G~~~~~R~n~ 98 (236)
T cd06231 89 GFEAITRWNR 98 (236)
T ss_pred HHhcCccCCC
Confidence 9999888864
No 46
>PRK10602 murein peptide amidase A; Provisional
Probab=99.71 E-value=1.2e-17 Score=129.30 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=68.1
Q ss_pred cEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCce
Q psy13505 79 KVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDG 158 (167)
Q Consensus 79 ~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG 158 (167)
.++..++|+|++||||++++++. ..|+.++|+||+||+||+|+++++++++.|.. +...+.|||++||||
T Consensus 14 ~~~~~~iG~S~egrpi~~l~~~~--~~~~~vli~agiHG~E~~g~~~~~~l~~~l~~--------~~~~~~iipvvNPDG 83 (237)
T PRK10602 14 PPGTEHYGRSLLGAPLLWFPAPA--ASRESGLILAGTHGDETASVVTLSCALRTLTP--------SLRRHHVVLAVNPDG 83 (237)
T ss_pred cccccccccccCCCceEEEEcCC--CCCceEEEEecCCCCcHHHHHHHHHHHHhhhh--------hccceEEEEEECccc
Confidence 36789999999999999999865 35789999999999999999999999999872 133578999999999
Q ss_pred eeeeeecCC
Q psy13505 159 YVYSMTKDV 167 (167)
Q Consensus 159 ~~~~~~~~~ 167 (167)
++++.+.|+
T Consensus 84 ~~~~~R~n~ 92 (237)
T PRK10602 84 CQLGLRANA 92 (237)
T ss_pred cccccccCC
Confidence 999887764
No 47
>KOG2650|consensus
Probab=99.62 E-value=1.1e-16 Score=132.00 Aligned_cols=58 Identities=38% Similarity=0.669 Sum_probs=54.5
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARF 58 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~ 58 (167)
+|+|+|+|+||+|+++|+||+||+||||.|.+||.||+++|+|+++|+|.+++++.++
T Consensus 360 ~y~asG~S~Dway~~~gi~~~ft~ELrd~g~~GF~LP~~~I~pt~~Et~~~i~~i~~~ 417 (418)
T KOG2650|consen 360 LYPASGGSDDWAYDVLGIPYAFTFELRDTGRYGFLLPASQIIPTAKETWAGIKAIAEK 417 (418)
T ss_pred eeccCCchHHHhhhccCCCEEEEEEeccCCCCCccCChHHhhhhHHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999998877653
No 48
>KOG3641|consensus
Probab=99.58 E-value=3.9e-15 Score=124.55 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=94.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHcC--CcEEEEEeccccCCeeeEEEEEecC-CCCCcEEEEEcccCCCCCccHHHHHHHHHH
Q psy13505 56 ARFIEREFVINSYLKHIARIYG--HKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQ 132 (167)
Q Consensus 56 ~~~y~t~~ei~~~l~~l~~~~p--~~~~~~~ig~S~~gr~i~~~~i~~~-~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~ 132 (167)
..+.+||..+.-+|..|++..+ -+.+...++.|..||++.+++|+.. ...+|.|++++++|++|+.+++++-+++++
T Consensus 376 YhypyTy~~l~~hLn~les~~~~~~yfr~dVl~~tl~g~~~~l~tI~~ae~~~~~~IfLSaRVHpgeTnsSwvmkGilef 455 (650)
T KOG3641|consen 376 YHYPYTYSQLQCHLNGLESPKNPAFYFRYDVLLFTLVGRAMALATIDMAECAPRPVIFLSARVHPGETNSSWVMKGILEF 455 (650)
T ss_pred eccCccHHHHHhhhhcccCCCCcCcccchheeeeeecCCccceEEeeHhhcCCcceEEEecccCCCCCcHHHHHHHHHHH
Confidence 3445789999999999987755 2577788899999999999999943 357899999999999999999999999999
Q ss_pred Hh-cCCCchhhhcCceEEEEecccCceeeee
Q psy13505 133 LM-ENPENFPMFRKVDWILIPMLNPDGYVYS 162 (167)
Q Consensus 133 l~-~~~~~~~ll~~~~~~iiP~~NPDG~~~~ 162 (167)
|+ .++.+..|.+.+.|.|+||+||||+-.+
T Consensus 456 l~s~~p~aq~LRe~~vFKI~PMLNPDGV~~G 486 (650)
T KOG3641|consen 456 LVSNSPLAQGLRESYVFKIVPMLNPDGVIVG 486 (650)
T ss_pred hhcCCcHHHhhhhheeEecccccCCCceecc
Confidence 99 7888888999999999999999999654
No 49
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.52 E-value=4.4e-15 Score=118.79 Aligned_cols=58 Identities=31% Similarity=0.524 Sum_probs=53.8
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~y 59 (167)
+|.++|+|.||+|+ .|+++|||+||||.|.+||.||+++|+|+++|+|++++++.+..
T Consensus 239 lY~a~G~s~Dw~y~-~~i~~s~t~EL~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~ 296 (300)
T cd03872 239 LYVSSGSSMDWAYK-NGIPYAFAFELRDTGYYGFLLPEGLIKPTCTETMLAVKNITMHL 296 (300)
T ss_pred eecCCCCHHHHhhc-CCCcEEEEEEeCCCCCCCCcCCHHHCCcccHHHHHHHHHHHHHH
Confidence 58999999999996 89999999999999999999999999999999999988876543
No 50
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.48 E-value=1.1e-14 Score=116.34 Aligned_cols=56 Identities=36% Similarity=0.675 Sum_probs=52.7
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFAR 57 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~ 57 (167)
+|+++|+|+||+++ .|+++|||+||||.|.+||.||+++|.|+++|+|.+++++.+
T Consensus 241 ~y~a~G~s~Dwa~~-~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~ 296 (298)
T cd06247 241 LYSNSGSSRDWAVD-IGIPFSYTFELRDNGTYGFVLPEDQIQPTCEETMTAVMSMVE 296 (298)
T ss_pred cccCCCChhhhhhc-cCCCEEEEEEeCCCCCCCCCCChHHCcchhHHHHHHHHHHHh
Confidence 58999999999996 799999999999999999999999999999999999887765
No 51
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.46 E-value=8.1e-14 Score=105.04 Aligned_cols=59 Identities=27% Similarity=0.535 Sum_probs=52.5
Q ss_pred EEEEcccCCCCCccHHHHHHHHHHHh-cCCCchhhhcCceEEEEecccCceeee-eeecCC
Q psy13505 109 IVLDGGIHAREWIAPATVLYVLQQLM-ENPENFPMFRKVDWILIPMLNPDGYVY-SMTKDV 167 (167)
Q Consensus 109 v~i~~~~H~~E~~~~~~~~~~~~~l~-~~~~~~~ll~~~~~~iiP~~NPDG~~~-~~~~~~ 167 (167)
|+|+||+||+|+.|+++++++++.|+ ..+..+.++++.+|+|+|++||||+++ .++.|+
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~~~l~~~~~i~iiP~~NPdG~~~~~~R~n~ 61 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRDTKLLENGRLLVVPVLNPDGYEAVNWRKNA 61 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcchHHHHhCCeEEEEeCcccccceeeeEEeCC
Confidence 68999999999999999999999999 333347899999999999999999999 777663
No 52
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.43 E-value=3.7e-14 Score=113.61 Aligned_cols=57 Identities=37% Similarity=0.682 Sum_probs=52.9
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARF 58 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~ 58 (167)
+|+++|+|+||+|+ .+++++||+||||.|.+||.||+++|+|+++|+|.+++++.+.
T Consensus 242 ~Y~a~G~s~Dw~y~-~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~~~~~~~~ 298 (300)
T cd06246 242 IYLAPGGSDDWAYD-LGIKYSFTFELRDTGTYGFLLPESYIKPTCSEALAAVKKIAWH 298 (300)
T ss_pred eeccCCChhhHhhc-CCCCEEEEEEecCCCCCCCCCCHHHcccccHHHHHHHHHHHHh
Confidence 58999999999996 8999999999999999999999999999999999998877653
No 53
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.43 E-value=4.4e-14 Score=113.49 Aligned_cols=58 Identities=33% Similarity=0.607 Sum_probs=54.3
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARF 58 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~ 58 (167)
+|+++|+++||+|+..|++++||+||+|.|.+||.+|+++|.|+++|+|.+++.+.++
T Consensus 246 ~y~~~G~~~D~~y~~~gi~~~~t~El~~~~~~gf~~p~~~i~p~~~e~~~~~~~~~~~ 303 (304)
T cd06248 246 LYQTTGSSVDWVYHVAGAAWSYQLELRDTGTYGFVLPAKQIIPTGEETWAGIKYLLKF 303 (304)
T ss_pred cccCCCCcchhhhccCCCcEEEEEEeCCCCCCCCCCCHHHCcchhHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999998877653
No 54
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.42 E-value=5.6e-14 Score=112.61 Aligned_cols=57 Identities=35% Similarity=0.582 Sum_probs=53.0
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARF 58 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~ 58 (167)
+|+++|+|+||+|+ .++++|||+||||.|.+||.||+++|.|+++|+|.+++.+.++
T Consensus 241 ~y~a~G~s~Dw~y~-~~~~~s~t~El~~~g~~gF~lP~~~i~p~~~E~~~~i~~~~~~ 297 (301)
T cd03870 241 IYQASGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGLLTIMEH 297 (301)
T ss_pred eecCCCChhhhhhc-CCCcEEEEEEeCCCCCCCCCCChHHCchhhHHHHHHHHHHHHH
Confidence 58999999999996 7999999999999999999999999999999999998877654
No 55
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.40 E-value=8.8e-14 Score=111.39 Aligned_cols=57 Identities=39% Similarity=0.694 Sum_probs=53.2
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARF 58 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~ 58 (167)
+|+++|+|+||+|+ .+++++||+||||.|.+||.||+++|.|+++|+|.+++++.++
T Consensus 242 ~Y~a~G~s~Dw~y~-~~~~~s~t~El~~~g~~gf~lp~~~I~~~~~E~~~~i~~~~~~ 298 (300)
T cd03871 242 IYPAAGGSDDWAYD-QGIKYSFTFELRDKGRYGFLLPESQIKPTCEETMLAVKYIANY 298 (300)
T ss_pred cccCCCCHHHHHhc-CCCcEEEEEEeCCCCCCCCCCCHHHCccccHHHHHHHHHHHHh
Confidence 58999999999996 7999999999999999999999999999999999998887654
No 56
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.22 E-value=1.7e-11 Score=100.86 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=67.0
Q ss_pred cEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh----cC-CCchhhhcCceEEEEec
Q psy13505 79 KVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM----EN-PENFPMFRKVDWILIPM 153 (167)
Q Consensus 79 ~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~----~~-~~~~~ll~~~~~~iiP~ 153 (167)
++....+|+|.+||...++.....++.+++++|++++|++ |..++.+++..|+ .. ...++++++..++++|.
T Consensus 120 ~~~~~~~g~sv~GR~~~~i~~~~~~~~~~~i~~~~~~H~~---g~~~~~~~~~~li~r~~~~~~~~~~lld~~~~~vvp~ 196 (374)
T COG2866 120 LVELELIGRSVEGRDDPLITFPESNPEHKTILITAGQHAR---GEKMVEWFLYNLILRYLDPDVQVRKLLDRADLHVVPN 196 (374)
T ss_pred cceeeecCccccccccceeeecCCCCccceeeEecccccC---ccHHHHHHHHHHHHHhcCccchhhhhhccccEEEecc
Confidence 5678889999999976666676677789999999999994 4455555555555 33 67889999999999999
Q ss_pred ccCceeeeee
Q psy13505 154 LNPDGYVYSM 163 (167)
Q Consensus 154 ~NPDG~~~~~ 163 (167)
+||||+++++
T Consensus 197 ~NpDG~~~~~ 206 (374)
T COG2866 197 VNPDGSDLGN 206 (374)
T ss_pred cCCchhhhcc
Confidence 9999999984
No 57
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.08 E-value=5.1e-11 Score=95.41 Aligned_cols=57 Identities=44% Similarity=0.769 Sum_probs=52.7
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFAR 57 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~ 57 (167)
+|+++|++.||+++..|++++||+|+++.+..||.+|+++|+++++|.|.+++.+.+
T Consensus 236 ~y~~~G~~~Dw~y~~~~~~~~~t~El~~~~~~gf~~p~~~i~~~~~e~~~~~~~~~~ 292 (294)
T cd03860 236 LYPASGGSDDWAYGVAGIPYSYTLELRDTGRYGFLLPASQIIPTAEETFAGIKAMAD 292 (294)
T ss_pred cccCCCchhhhhhccCCCcEEEEEEecCCCCCCCcCChHHchhHHHHHHHHHHHHHh
Confidence 488999999999999999999999999999999999999999999999988776654
No 58
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.03 E-value=1.7e-09 Score=85.72 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEE---eccccCCeeeEEEEEecCCCCCcEEEEEcccCCCC-CccHHHHHHHHHHHhc
Q psy13505 60 EREFVINSYLKHIARIYGHKVNVST---IGETIEGRPIQAVKISHGGVGNPIIVLDGGIHARE-WIAPATVLYVLQQLME 135 (167)
Q Consensus 60 ~t~~ei~~~l~~l~~~~p~~~~~~~---ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E-~~~~~~~~~~~~~l~~ 135 (167)
.+|.|-.+.+.+.++.-.-.++-.. .|..-+--+|.++.|+..+++ |.+++++|+||.| .+|+.+++.+++.+.
T Consensus 3 ~sY~eAR~kFl~aA~~aga~~~~~~~~~~gp~g~~l~i~v~~~g~~~~~-~~l~i~sGvHG~Eg~~Gs~~~~~ll~~~~- 80 (283)
T cd06233 3 QSYAEAREKFLAAAKAAGAALESYVHPLLGPDGEALAIDVARLGPADAK-RLLVITSGTHGVEGFCGSAIQLALLRELL- 80 (283)
T ss_pred ccHHHHHHHHHHHHHHcCccceeeeccCCCCCCceeeeeEEEEcCCCCC-cEEEEEecccCCcccchHHHHHHHHHhcc-
Confidence 3566655555555544332222222 233333346888888877754 4999999999999 799999999999986
Q ss_pred CCCchhhhcCceEEEEecccCceeeeeeecCC
Q psy13505 136 NPENFPMFRKVDWILIPMLNPDGYVYSMTKDV 167 (167)
Q Consensus 136 ~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~ 167 (167)
+ ..+..+..+++||++||.|+...++.|+
T Consensus 81 -~--~~~~~~~~vi~vh~vNP~Gf~~~~R~ne 109 (283)
T cd06233 81 -P--RSLPAGVAVLLVHALNPYGFAHLRRVNE 109 (283)
T ss_pred -h--hhccCCceEEEEeCcCHHHHhhcccCCC
Confidence 2 2455678999999999999998888774
No 59
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=98.93 E-value=2.1e-09 Score=88.26 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=56.9
Q ss_pred eccccCC--eeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeee
Q psy13505 85 IGETIEG--RPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVY 161 (167)
Q Consensus 85 ig~S~~g--r~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~ 161 (167)
++++..| +.|++..+....+ .|+++|+|++||+|+.|..++.++++.|..... ..-+ +-+++++|++||+|+..
T Consensus 5 ~~~~~~g~~~~ipv~~~~g~~~-gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~~-~~~l-~G~v~ivP~~Np~g~~~ 80 (359)
T cd06250 5 LPSPAPGTERELTVFRFGGAGA-GPKVYIQASLHADELPGMLVLHHLIELLKKLEA-EGRI-LGEITLVPVANPIGLNQ 80 (359)
T ss_pred cccCCCCCeEEEEEEEEeCCCC-CCEEEEEeccccCchHHHHHHHHHHHHHhhhcc-cccc-CceEEEEeCcChHHHHh
Confidence 4455555 6788888875443 699999999999999999999999999982211 1123 34799999999999954
No 60
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.71 E-value=2.2e-08 Score=80.18 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=55.8
Q ss_pred cccCCee--eEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 87 ETIEGRP--IQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 87 ~S~~gr~--i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
+...|.+ |.++.+...++ .|.++|+||+||+|..|..++..+++.|. + ..+ +-.+.++|++||.|+....+
T Consensus 4 ~~~~g~~~~~pv~~~~g~~~-gp~v~i~agvHG~E~~G~~~~~~l~~~l~--~---~~~-~g~~~~vp~~N~~a~~~~~R 76 (293)
T cd06255 4 TMADGSAVALPVTILRGAEP-GPTLWLHAQVHGNEYNGTQAIVDLYRSLD--P---AAL-KGRLVALPTANPTALDARTR 76 (293)
T ss_pred cCCCCCccceeEEEEeCCCC-CCEEEEEcccCCCcHHHHHHHHHHHHhCC--H---hhc-CCeEEEEeCcCHHHHHhhcc
Confidence 3444543 66677765553 48999999999999999999999999874 1 123 34667899999999977776
Q ss_pred cCC
Q psy13505 165 KDV 167 (167)
Q Consensus 165 ~~~ 167 (167)
.+|
T Consensus 77 ~~p 79 (293)
T cd06255 77 MSP 79 (293)
T ss_pred cCC
Confidence 654
No 61
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=98.69 E-value=5.3e-09 Score=86.95 Aligned_cols=53 Identities=21% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhh
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARF 58 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~ 58 (167)
+|+++|+|+||+|. ++++++||+||+|. |.+|++||.+..+|.++++..+.+.
T Consensus 263 ~Y~~sG~~~Dw~y~-~~~~~~~T~EL~~~----~~pp~~~i~~~~~e~~~~l~~~~~~ 315 (395)
T cd03867 263 WYSFSGGMSDFNYL-HTNCFEVTVELGCD----KFPPEEELYTIWQENKEALLSFMEM 315 (395)
T ss_pred eeEcCCCcchhhhh-ccCceEEEEEecCC----CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999995 89999999999985 3499999999999988776655443
No 62
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.62 E-value=5e-08 Score=77.92 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=50.5
Q ss_pred eEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 94 IQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 94 i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
|++..+....+ .|.++|+||+||+|+.|..++..+++.|. + .. .+-.++++|++||.|+....+.+
T Consensus 9 ~pv~~~~g~~~-gp~v~i~~giHGdE~~G~~~~~~l~~~l~--~---~~-~~g~v~~vp~~Np~a~~~~~R~~ 74 (287)
T cd06251 9 IPVHVIRGKKP-GPTLLLTAAIHGDELNGVEIIRRLLRQLD--P---KT-LRGTVIAVPVVNVFGFLNQSRYL 74 (287)
T ss_pred eeEEEEeCCCC-CCEEEEEcCccCCchhHHHHHHHHHhcCC--c---cc-CceEEEEEeCCCHHHHHhccccC
Confidence 56666655443 48999999999999999999998888874 1 11 23467899999999997766544
No 63
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.46 E-value=2.1e-07 Score=74.36 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=49.8
Q ss_pred eeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeee
Q psy13505 93 PIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSM 163 (167)
Q Consensus 93 ~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~ 163 (167)
.+++..+.... ..|+++|+||+||+|+.|..++..+++.|- +. ..+-.+.++|++||.|++...
T Consensus 5 ~~pv~~~~g~~-~gp~v~i~agvHG~E~~G~~~~~~l~~~l~--~~----~~~g~v~~vp~~N~~a~~~~~ 68 (288)
T cd06254 5 AIPVTLINGVN-PGPTLAITAGVHGGEYPGIQALQKLAREID--PA----KLSGTLIIVHVLNLSGFYART 68 (288)
T ss_pred cccEEEEeCCC-CCCEEEEEecccCCchhHHHHHHHHHHhCC--cc----cCeEEEEEEeCcCHHHHHhcC
Confidence 45666665554 348999999999999999999999998873 21 125568999999999996543
No 64
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.45 E-value=2e-07 Score=74.88 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=52.4
Q ss_pred eeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 92 RPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 92 r~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
..|....++.+ .|+++|+|++||+|..|..++..+++.|...+....+.-+-.+.++|++||-|+....+.
T Consensus 8 ~~~~~~~~g~~---gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~~~~l~g~v~~vP~~N~~a~~~~~R~ 78 (298)
T cd06253 8 NRIEGFNFGGG---EKRICIVGGIHGDELQGLYICSLLIRFLKELEKRGPLKLNGIVDVIPSVNPLGLNLGTRF 78 (298)
T ss_pred cEEEeeecCCC---CcEEEEEccCccchHHHHHHHHHHHHHHhhhhcccccccCceEEEEeCcCHHHHHHhhCc
Confidence 34555666643 489999999999999999999999999972221111223778999999999987554443
No 65
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.39 E-value=5.6e-07 Score=72.87 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=53.5
Q ss_pred CCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 90 EGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 90 ~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
..-.|++..|..+. -|+++|+||+||+|..|..++..+++.|- + .. .+-.+.++|++||-|+....+.+
T Consensus 20 ~~~~iPv~v~~g~~--gp~v~I~aGiHGdE~~G~~~~~~L~~~l~--~---~~-l~G~vi~vP~~Np~a~~~~~R~~ 88 (316)
T cd06252 20 GTVMIPITVIKNGD--GPTVLLTGGNHGDEYEGQIALLRLARRLD--P---EE-VRGRVIILPALNFPAVQAGTRTS 88 (316)
T ss_pred CceEeeEEEEeCCC--CCEEEEEccCCCCchHHHHHHHHHHHhCC--h---hh-CeEEEEEEeCCCHHHHHhccccC
Confidence 34577776675543 58999999999999999999999999885 1 11 24578999999999997655544
No 66
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=98.38 E-value=1.1e-07 Score=78.56 Aligned_cols=49 Identities=20% Similarity=0.138 Sum_probs=41.6
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhccccccee
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKV 54 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~ 54 (167)
+|+++|+|+||+|+ .+.+++||+||++. +.+|++++.+...|.++++..
T Consensus 243 ~Y~~~G~~~Dw~y~-~~~~~~~t~El~~~----~~p~~~~i~~i~~en~~all~ 291 (374)
T cd03858 243 WYSVTGGMQDWNYL-HTNCFEITLELSCC----KFPPASELPKYWEENREALLA 291 (374)
T ss_pred eeEcCCCchhhhhh-ccCceEEEEeccCC----CCCChhHhHHHHHHHHHHHHH
Confidence 58999999999997 79999999999976 377999999988887765443
No 67
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=98.30 E-value=2.6e-07 Score=76.34 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=37.8
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhccc
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMF 49 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~ 49 (167)
+|+++|+|+||+|+ ++++++||+||+| +|.+|++++.+...|.+
T Consensus 241 ~Y~~~G~~~Dw~y~-~~~~~~~T~El~~----~~~p~~~~l~~~w~~n~ 284 (372)
T cd03868 241 WYDVPGGMQDYNYL-HSNCFEITLELSC----CKYPPASELPEEWNNNR 284 (372)
T ss_pred eeeCCCCcchhhhh-ccCeeEEEEEecC----CCCCCHHHHHHHHHHhH
Confidence 48999999999996 8999999999986 58999999987665544
No 68
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=98.28 E-value=2.8e-07 Score=76.22 Aligned_cols=44 Identities=20% Similarity=0.106 Sum_probs=38.0
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhccc
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMF 49 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~ 49 (167)
+|+++|+++||+| .++.+++||+||+| .+.+|++++.+...|..
T Consensus 240 ~Y~~sG~~~Dw~y-~~~~~~~~T~El~~----~k~p~~~~l~~~w~~n~ 283 (376)
T cd03866 240 WYPLQGGMQDYNY-VWAQCFEITLELSC----CKYPPEEQLPAFWEDNK 283 (376)
T ss_pred EEEcCCCchhhhh-hhCceEEEEEEecC----CCCCCHHHHHHHHHHhH
Confidence 4899999999999 68999999999998 48889999997665543
No 69
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=98.26 E-value=1.3e-06 Score=71.01 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=51.2
Q ss_pred eeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeecCC
Q psy13505 92 RPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKDV 167 (167)
Q Consensus 92 r~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~ 167 (167)
-+|++..|..+ +-|+++|+||+||+|..|..++..+++.|- +. + -+-.+++||++||-|+....+.+|
T Consensus 35 ~~ipv~vi~~~--~gp~v~i~agvHGdE~~G~~~~~~L~~~l~--~~--~--l~G~v~~vP~~N~~g~~~~~r~~p 102 (325)
T TIGR02994 35 VMIPITVIKNG--IGPTALLTGGNHGDEYEGPIALFELARTLD--AE--D--VSGRIIIVPAMNYPAFRAGTRTSP 102 (325)
T ss_pred EEeeEEEEeCC--CCCEEEEEeccCCCchHHHHHHHHHHhhCC--hh--h--CcEEEEEEcCCCHHHHHhhCCCCC
Confidence 45555555433 348999999999999999999999999884 21 1 245689999999998866555543
No 70
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=98.24 E-value=8.7e-07 Score=70.62 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=42.6
Q ss_pred cEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 107 PIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 107 ~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
|.++|+||+||+|+.|..++..+++.|-.. + -.-.++++|++||.|+.-..+..
T Consensus 3 p~l~i~agvHGnE~~G~~a~~~L~~~l~~~----~--~~G~~~~vp~~N~~a~~~~~R~~ 56 (292)
T PF04952_consen 3 PTLLITAGVHGNEYNGIEALQRLLRELDPA----D--LSGTVIIVPVANPPAFRQGTRFV 56 (292)
T ss_dssp -EEEEEE-SSTTBCHHHHHHHHHHHHHHGG----G--CTCEEEEEEESSHHHHHHTSSSS
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhcchhc----c--cCCceEEEEEeCHHHHHhccccC
Confidence 899999999999999999999999999611 1 35578999999999986554443
No 71
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=98.22 E-value=8.8e-07 Score=71.91 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=28.0
Q ss_pred CCCCCccchhhccccC------ceeEEEEEEeeCCCC
Q psy13505 1 MGVNSGGSDDWVKGYV------GVKYCYTVELPRGGA 31 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~------~~~~s~t~el~d~g~ 31 (167)
||++||+|+||+|+.+ ++++|||+||||.+.
T Consensus 271 lY~~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~~~~ 307 (332)
T cd06228 271 LYPTSGASDDYAFSRHFADAVKRKVFSYTIEFGETNS 307 (332)
T ss_pred ccCCCCChhhhhhhccccccccCceEEEEEEeCCCCC
Confidence 6999999999999865 899999999998854
No 72
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=97.94 E-value=1.1e-05 Score=65.62 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=44.1
Q ss_pred EEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 98 KISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 98 ~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
.+.......|.|+|+||+||+|+.|.+++..+++.+... + +....-.++|+.||.++....+
T Consensus 39 ~~~p~~~~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~----~-~~~~~~v~~i~~Np~A~~~~~R 100 (329)
T PRK05324 39 ELTPAAPSTKALVLSAGIHGNETAPIELLDQLVRDLLAG----E-LPLRARLLVILGNPPAMRAGKR 100 (329)
T ss_pred EeecCCCCCCeEEEECCcccCcHHHHHHHHHHHHhhhcc----c-cccCceEEEEecCHHHHHhCcc
Confidence 344444567899999999999999999999999988711 1 1111225556899998864443
No 73
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=97.87 E-value=2.1e-05 Score=63.90 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=45.9
Q ss_pred EEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 96 AVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 96 ~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
+++++.....-|.|+|+||+||+|+.|.+++..+++.+... .+....-.++|+.||.++....+
T Consensus 32 ~l~~~p~~~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~-----~l~~~~~v~~~~~Np~A~~~~~R 95 (322)
T cd03855 32 VLELTPAAPATKAIVISAGVHGNETAPIEILNQLIKDLLAG-----ELPLAHRLLFIFGNPPAMRAGER 95 (322)
T ss_pred EEEEeCCCCCCCeEEEEccccCCchhHHHHHHHHHHhhhhc-----cccCCeEEEEEeeCHHHHHhCcc
Confidence 34455555566899999999999999999999999998711 11222235667899998754443
No 74
>COG3608 Predicted deacylase [General function prediction only]
Probab=97.74 E-value=4.7e-05 Score=61.59 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=48.5
Q ss_pred EEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 95 QAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 95 ~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.++.++++ +-|+++|++++||+|..|+.++..+++.|- + ++ =.-+++|||.+||-+.+...+.+
T Consensus 39 ~~~~~~~g--~gp~~~l~ag~HGdEl~G~~al~~Li~~L~--~--a~--i~GtV~iVP~aN~~a~~~~~R~~ 102 (331)
T COG3608 39 PVFVFGNG--PGPSVLLQAGVHGDELPGVIALRRLIPALD--P--AD--ISGTVIIVPIANPPAFEAQGRFS 102 (331)
T ss_pred eEEEecCC--CCCEEEEEecccccccchHHHHHHHHHhcC--H--hh--cCceEEEEeccCHHHHHhhcccC
Confidence 33344443 359999999999999999999999999995 2 11 24578999999998876555443
No 75
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=97.66 E-value=6.9e-05 Score=60.81 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=41.3
Q ss_pred CCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 103 GVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 103 ~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
...-|.|+|+||+||+|..|.+++..+++.+. + ..+.-...+.++ +.||.++....+
T Consensus 38 ~~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~--~--~~~~~~~~l~~i-~~Np~A~~~~~R 94 (319)
T TIGR03242 38 APPQKSLVISAGIHGNETAPIEILEQLLGDIA--A--GKLPLRVRLLVI-LGNPPAMRTGKR 94 (319)
T ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHhhhh--h--ccccCCceEEEE-EcCHHHHHhCcc
Confidence 34558999999999999999999999999886 1 111223444444 789998865444
No 76
>PRK02259 aspartoacylase; Provisional
Probab=97.65 E-value=2.9e-05 Score=62.10 Aligned_cols=52 Identities=19% Similarity=0.018 Sum_probs=39.2
Q ss_pred cEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 107 PIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 107 ~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
+.|+|+||+||+|..|.+++..+++.+. + .+ + .-...++|+.||.++....+
T Consensus 3 ~~v~i~aGvHGnE~~Gv~~v~~l~~~~~--~--~~-~-~g~~i~~~i~Np~A~~~~~R 54 (288)
T PRK02259 3 NRVAIVGGTHGNEITGIYLVKKWQQQPN--L--IN-R-KGLEVQTVIGNPEAIEAGRR 54 (288)
T ss_pred cEEEEEcCccCChhHHHHHHHHHHhccc--c--cc-c-CccEEEEEeeCHHHHHhCCC
Confidence 7899999999999999988888887764 1 11 2 23357888999998865444
No 77
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.45 E-value=0.00014 Score=59.18 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=38.3
Q ss_pred cEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeee
Q psy13505 107 PIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 107 ~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
|.|+|+||+||+|..|.+++..+++.+- + .+ +... .++++.||-++.-..+
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~--~--~~-~~~~--~~l~i~Np~A~~~~~R 85 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALE--A--RP-LPRS--LLLFIGNVAAALAGVR 85 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCC--h--hh-cCCc--EEEEEeCHHHHHhCcc
Confidence 8999999999999999999988888875 1 12 3333 3345699998865443
No 78
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=97.38 E-value=8.6e-05 Score=58.90 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.8
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCC
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGA 31 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~ 31 (167)
+|.++|+|.||+++.+|+++|||+|+++.|.
T Consensus 213 ~~~~~gtsr~~~~~~~~i~~syTlE~~~~g~ 243 (269)
T cd03856 213 SDPDRGTGRVVVAKQIKVQHSYTMEVTFNGN 243 (269)
T ss_pred ccCCCChHHHHHHHhcCCcEEEEEecCCCCc
Confidence 3678999999999999999999999998754
No 79
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=96.89 E-value=0.00066 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=24.9
Q ss_pred EEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 109 IVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 109 v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
|+|+||+||+|+.|+.+++.+++.|+
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~ 26 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILP 26 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998
No 80
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=96.86 E-value=0.00045 Score=57.29 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=38.6
Q ss_pred CCCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhhhhhHHHHHHHHHHHH
Q psy13505 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREFVINSYLKHIA 73 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~y~t~~ei~~~l~~l~ 73 (167)
.|+++|+++||.|. ++..|++|+||+|. ...|++++..... .+.+.+.++|.++.
T Consensus 242 wY~~~GgmqDw~y~-~~~~~e~T~El~~~----k~p~~~~l~~~w~-------------~n~~all~~~~~~~ 296 (375)
T cd03863 242 WYNVPGGMQDWNYL-NTNCFEVTIELGCV----KYPKEEELPKYWE-------------QNRRSLLQFMKQVH 296 (375)
T ss_pred EEecCCChhhhhhh-hcCeEEEEEecCcc----cCCCHHHHHHHHH-------------HHHHHHHHHHHHhc
Confidence 47899999999997 79999999999875 2245555554221 34555667776543
No 81
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=96.76 E-value=0.022 Score=46.70 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEe---ccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCC-ccHHHHHHHHHHHhc
Q psy13505 60 EREFVINSYLKHIARIYGHKVNVSTI---GETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREW-IAPATVLYVLQQLME 135 (167)
Q Consensus 60 ~t~~ei~~~l~~l~~~~p~~~~~~~i---g~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~-~~~~~~~~~~~~l~~ 135 (167)
.+|.+-.+.+.+.++.-+-.++-..+ |..-|.--+.++.++..+ .++.+++++|.||=|- .|+..-+.+++...
T Consensus 3 ~sY~~AR~~Fl~aA~~~ga~~~~~~~p~~G~~ge~L~~Dva~lg~~~-a~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~- 80 (341)
T PF10994_consen 3 QSYAEARERFLAAAEAAGAKLESYPHPLRGPDGEDLATDVAWLGPKD-ASRLLVLTSGTHGVEGFAGSAIQIALLREDL- 80 (341)
T ss_pred ccHHHHHHHHHHHHHHcCCcceeeeCCCCCCCCCcceeEEEEecCCC-CCeEEEEEecCCcccccccHHHHHHHHHccc-
Confidence 35666655555555554433332222 333444556677777766 3459999999999996 45555556666653
Q ss_pred CCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 136 NPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 136 ~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
...+.+++-+.+|=.+||-|+.+.++.|
T Consensus 81 ---~~~~~~~~avllVHAlNPyGfa~~RR~n 108 (341)
T PF10994_consen 81 ---ARSLPAGVAVLLVHALNPYGFAWLRRVN 108 (341)
T ss_pred ---ccccCCCCeEEEEEccCccccceeeccC
Confidence 3456678899999999999999998876
No 82
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.013 Score=46.59 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHHcCCcEEEEEecccc--CCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 71 HIARIYGHKVNVSTIGETI--EGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 71 ~l~~~~p~~~~~~~ig~S~--~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
.|.-+.|..++.+.-|..+ .|+- ++++....+....+.|+||+||||+.+.+++-.++..+.
T Consensus 8 tl~~~~p~v~q~~~~g~~~~wl~~g--~le~~p~~~r~~~lvIsaGiHGNEtapvEll~kl~~~~~ 71 (324)
T COG2988 8 TLSGKKPVVTQREINGVRWRWLGEG--VLELTPLAPRDGSLVISAGIHGNETAPVELLDKLQQKIS 71 (324)
T ss_pred hhcCCCCeeeeeccCceEEEEeccc--eeeeccCCCCCCceEEEecccCCccCcHHHHHHHHhhhh
Confidence 4455667444433334332 1222 233433332223799999999999999999999888887
No 83
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=95.95 E-value=0.02 Score=42.78 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=32.3
Q ss_pred cEEEEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeee
Q psy13505 107 PIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYS 162 (167)
Q Consensus 107 ~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~ 162 (167)
|.=++.||+||+||-.+ ..+++.|. ...+++-.+.|+| +..+|-.++
T Consensus 7 p~rLFvgGlHG~Egk~t---~~iL~~l~-----~~~~~~G~l~i~p-lv~~~kYiS 53 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDT---SPILKRLK-----PNDFNNGNLIIIP-LVENSKYIS 53 (193)
T ss_pred ceEEEEeeccCcchhhH---HHHHHHhC-----cccccCceEEEEe-CCCCCCcee
Confidence 88899999999999544 44556665 2334557899999 444454443
No 84
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.90 E-value=0.006 Score=48.42 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=24.4
Q ss_pred cEEEEEcccCCCCCccHHHHHHHHHH
Q psy13505 107 PIIVLDGGIHAREWIAPATVLYVLQQ 132 (167)
Q Consensus 107 ~~v~i~~~~H~~E~~~~~~~~~~~~~ 132 (167)
|+++|+||+||+|..|.+++..+++.
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~ 26 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE 26 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC
Confidence 78999999999999999999999985
No 85
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.62 E-value=0.012 Score=47.02 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=24.6
Q ss_pred cEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 107 PIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 107 ~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
+.|+|+||+||+|..|.+++..+++.+.
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~ 28 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPE 28 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccc
Confidence 4799999999999999998888888764
No 86
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.13 E-value=0.014 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=24.5
Q ss_pred EEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 109 IVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 109 v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
++|+||+||+|..|.+++..+++.+.
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~ 26 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELD 26 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHh
Confidence 58999999999999999999999887
No 87
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=94.05 E-value=0.025 Score=45.02 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=22.4
Q ss_pred CCCCCccchhhccccCce------eEEEEEEe
Q psy13505 1 MGVNSGGSDDWVKGYVGV------KYCYTVEL 26 (167)
Q Consensus 1 ~~~~~g~s~D~~~~~~~~------~~s~t~el 26 (167)
+|.++|+|.||+|+.+++ .+++|+|+
T Consensus 207 ~Y~a~G~~~D~~y~~~~~~~~~~~~l~~TlE~ 238 (273)
T cd03862 207 HYLTHGDLWDYLYDQHQKQQPNGRFLPLTLEM 238 (273)
T ss_pred eEECCCCHHHHHHhhcCcccccccceeEEEEe
Confidence 478999999999987654 78999998
No 88
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.93 E-value=0.22 Score=36.61 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=29.2
Q ss_pred EEEcccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCcee
Q psy13505 110 VLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGY 159 (167)
Q Consensus 110 ~i~~~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~ 159 (167)
+++||+||+|+-.++-++. +..+ ++ .+-++.++|.+|+-=|
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~--~~------~ng~l~Vip~v~n~~Y 58 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVL--PE------ENGVLRVIPKVENGPY 58 (198)
T ss_pred EEEeeccCcccchhhhhhh-hccc--Cc------cCceEEEEeccCCCCc
Confidence 8999999999988888775 2222 11 3467889997776544
No 89
>KOG3641|consensus
Probab=86.39 E-value=0.23 Score=43.05 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHcCC-------cEEEEEeccccCCeeeEEEEEecCC-----------------CCCcEEE--EEc
Q psy13505 60 EREFVINSYLKHIARIYGH-------KVNVSTIGETIEGRPIQAVKISHGG-----------------VGNPIIV--LDG 113 (167)
Q Consensus 60 ~t~~ei~~~l~~l~~~~p~-------~~~~~~ig~S~~gr~i~~~~i~~~~-----------------~~k~~v~--i~~ 113 (167)
.+++|-...+..+...+|+ +........|.+|...+..+|.+.- +-+.-.+ ..+
T Consensus 53 ~s~~~~e~~~~~~~~~~~~~~~~d~~~~~~~~~~~s~~~~~~~~~~iv~~L~~~~~~~~~~l~~p~~t~~p~df~~pt~~ 132 (650)
T KOG3641|consen 53 FSYSDCEELLNQLDQRFPESSDLDTILQHRELLCYSLDGLRGDLLTIVSCLREDRLPRLEQLFPPTSTPRPFDFALPTSS 132 (650)
T ss_pred cchhHHHHHHHHHHHhhhccCccchhHHHHHhhhcCCcccccchhHHHHHHHHHhhhccccCCCCccCCCcccCCCcccc
Confidence 4566666666666666553 1112334566677666666665320 1111111 677
Q ss_pred ccCCCCCccHHHHHHHHHHHhcCCCchhhhcCceEEEEecccCceeeeeeec
Q psy13505 114 GIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTK 165 (167)
Q Consensus 114 ~~H~~E~~~~~~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 165 (167)
..|+ |..+.-..-++.+.. +|+....|++-+.+ |||+|||||...++.
T Consensus 133 ~~~P-~t~~n~~F~g~~d~~-dde~~~~l~~~~v~--Vp~l~P~~~~~~~~~ 180 (650)
T KOG3641|consen 133 RVHP-ETPSNFVFNGFLDDI-DDERNQTLRRLFVF--VPMLNPDGVVRGHYN 180 (650)
T ss_pred ccCC-CCCcceeeccccccc-cchhhhhHhhheee--eeccCCcEEEEEeee
Confidence 8888 655444333444443 45556666655554 999999999877653
No 90
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=75.67 E-value=2.5 Score=35.47 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=20.6
Q ss_pred HHHHHHHh-cCCCchhhhcCceEEEEecc-cCceeeeeee
Q psy13505 127 LYVLQQLM-ENPENFPMFRKVDWILIPML-NPDGYVYSMT 164 (167)
Q Consensus 127 ~~~~~~l~-~~~~~~~ll~~~~~~iiP~~-NPDG~~~~~~ 164 (167)
|..++.|+ +|+.++ -+|.||.+ ||+|..|+.+
T Consensus 160 mD~Ve~LV~~D~svK------GiWcVP~ySNPtG~tySde 193 (425)
T PF12897_consen 160 MDMVEELVAEDPSVK------GIWCVPKYSNPTGITYSDE 193 (425)
T ss_dssp HHHHHHHTHTSTTEE------EEEE-SSS-TTT-----HH
T ss_pred HHHHHHHHhcCCccc------eEEeCCCccCCCCccCCHH
Confidence 56788888 788875 58999987 9999999854
No 91
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=58.46 E-value=7.9 Score=32.67 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=26.7
Q ss_pred CCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhh
Q psy13505 2 GVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRK 43 (167)
Q Consensus 2 ~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~ 43 (167)
|+.+|+-+||.|-..+ -+--|+||.|. ...|++++..
T Consensus 275 y~~~GgmqD~nY~~~n-cfEiTlElsc~----K~P~~~~L~~ 311 (405)
T cd03869 275 HTVAGSMNDFSYLHTN-CFELSVYLGCD----KFPHESELPE 311 (405)
T ss_pred ccCCCcccchhhhccC-eEEEEEeccCC----CCCChHHHHH
Confidence 7789999999995433 37889998765 4455566654
No 92
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=56.81 E-value=7 Score=32.83 Aligned_cols=27 Identities=22% Similarity=0.074 Sum_probs=21.6
Q ss_pred CCCCccchhhccccCceeEEEEEEeeCC
Q psy13505 2 GVNSGGSDDWVKGYVGVKYCYTVELPRG 29 (167)
Q Consensus 2 ~~~~g~s~D~~~~~~~~~~s~t~el~d~ 29 (167)
|+.+|+-+||.|-..+ -+.-|+||.|.
T Consensus 262 y~~~GgmqD~~Y~~~n-c~e~t~el~c~ 288 (392)
T cd03864 262 YSLSKGMQDFNYLHTN-CFEITLELSCD 288 (392)
T ss_pred EecCCCchhhhhhccC-eeEEEEecccc
Confidence 7789999999996444 57889999755
No 93
>PF11704 Folliculin: Vesicle coat protein involved in Golgi to plasma membrane transport; InterPro: IPR021713 In yeast cells this family functions in the regulated delivery of Gap1p (a general amino acid permease) to the cell surface, perhaps as a component of a post-Golgi secretory-vesicle coat complex []. Birt-Hogg-Dube (BHD)4 syndrome is an autosomal dominant disorder characterised by hamartomas of skin follicles, lung cysts, spontaneous pneumothorax, and renal cell carcinoma. Folliculin is the protein from the BHD4 gene and is found to have no significant homology to any other human proteins. It is expressed in most tissues. These same symptoms also occur in TSC or tuberous sclerosis complex, suggesting that the same pathway is involved, and it is likely that the target is the down-stream Tor2 - an essential gene. Folliculin appears to bind Tor2, and down-regulation of Tor2 activity leads to up-regulation of nitrogen responsive genes including membrane transporters and amino acid permeases [].
Probab=46.80 E-value=41 Score=24.74 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=37.9
Q ss_pred cCceeEEEEEEeeCCCCCCccCCchhhhhhhhcccccceehhhhhhhHHHHHHHHHHHHHH
Q psy13505 15 YVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREFVINSYLKHIARI 75 (167)
Q Consensus 15 ~~~~~~s~t~el~d~g~~gf~lP~~~i~~~~~E~~~~~~~~~~~y~t~~ei~~~l~~l~~~ 75 (167)
..|-.++|++.|+|.-..|+..+..-+.-...++..-+..+.--.....+|.++|++.+++
T Consensus 45 ~~G~~ls~~F~L~D~~ARG~~R~Y~li~l~~d~~~~L~~~w~~i~~~f~~ii~~iq~~a~~ 105 (167)
T PF11704_consen 45 SRGYTLSYIFRLYDPQARGFERRYCLIVLSDDKMKKLLNNWPFISSHFSKIIEWIQQKAEK 105 (167)
T ss_pred CCCeEEEEEEEecCccccCccccEEEEEEeCChhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999998888887777665443332211111111113356788888777665
No 94
>KOG1137|consensus
Probab=43.00 E-value=46 Score=29.46 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=31.1
Q ss_pred CCcEEEEEeccccC-CeeeEEEEEecCCCCCcEEEEEcccCCC
Q psy13505 77 GHKVNVSTIGETIE-GRPIQAVKISHGGVGNPIIVLDGGIHAR 118 (167)
Q Consensus 77 p~~~~~~~ig~S~~-gr~i~~~~i~~~~~~k~~v~i~~~~H~~ 118 (167)
.+.+.+..+|-.-| ||.+..++..- ++|++.+|+|++
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kG-----k~iMld~gvhpa 48 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKG-----KTIMLDCGVHPA 48 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecC-----eEEEeccccCcc
Confidence 56788999988654 99999988844 899999999975
No 95
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=33.86 E-value=2e+02 Score=22.95 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=52.1
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEEEeccc-cCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGET-IEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 57 ~~y~t~~ei~~~l~~l~~~~p~~~~~~~ig~S-~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
.+-.+|..-...++++.++||++--+..|-+- ...|....++|.-.+ -.+..|++|+-|++= +--+.|+..|-
T Consensus 138 ~y~~sY~~Sr~tv~~~l~~~p~i~~~iDiHRDs~~~~~~~t~~InG~~-~Aki~fVvG~~np~~----~~N~~fA~~l~ 211 (268)
T PF07454_consen 138 SYNQSYKRSRETVKKALKENPDIKVVIDIHRDSVPDREKTTTTINGKN-YAKIMFVVGRDNPNW----EKNLAFAKQLH 211 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCccccceEEECCEE-eeEEEEEEcCCCCCH----HHHHHHHHHHH
Confidence 44467888888899999999998888888664 444888888875443 447788888887764 44555555554
No 96
>PF04327 DUF464: Protein of unknown function (DUF464); InterPro: IPR007422 This entry is represented by Bacteriophage Cp-1, Orf13. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2IDL_A 2G0J_D 2G0I_B 2P92_B 1S12_C.
Probab=31.52 E-value=78 Score=21.06 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEE
Q psy13505 62 EFVINSYLKHIARIYGHKVNV 82 (167)
Q Consensus 62 ~~ei~~~l~~l~~~~p~~~~~ 82 (167)
.+.+..-|+.++++||+++++
T Consensus 83 l~~~~~gL~~i~~~Yp~~Iki 103 (103)
T PF04327_consen 83 LETLLLGLKSIEEQYPDYIKI 103 (103)
T ss_dssp HHHHHHHHHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHHHHhhhhccC
Confidence 456777889999999999874
No 97
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=30.61 E-value=25 Score=27.65 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CCccchhhccccCceeEEEEEEee
Q psy13505 4 NSGGSDDWVKGYVGVKYCYTVELP 27 (167)
Q Consensus 4 ~~g~s~D~~~~~~~~~~s~t~el~ 27 (167)
..|++..+.+...++++|||+|..
T Consensus 203 k~~tar~~~~~~~~~~~syTlE~s 226 (258)
T cd06235 203 KEGTARVALWRELGIPNSYTLETS 226 (258)
T ss_pred CCCcHHHHHHHHcCCceEEEEeee
Confidence 357888899999999999999975
No 98
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=30.00 E-value=58 Score=24.21 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 104 VGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 104 ~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
...+.|++...+||.|-.|--..+.|++.|-
T Consensus 112 ~~~~~vv~stTi~GYEGtGRgF~lkf~~~L~ 142 (177)
T PF05127_consen 112 RRFPRVVFSTTIHGYEGTGRGFSLKFLKQLK 142 (177)
T ss_dssp CCSSEEEEEEEBSSTTBB-HHHHHHHHCT--
T ss_pred hhCCEEEEEeeccccccCCceeeeehhhhcc
Confidence 4678999999999999999988888888874
No 99
>COG2868 Predicted ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=29.97 E-value=92 Score=21.33 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEE
Q psy13505 62 EFVINSYLKHIARIYGHKVNVST 84 (167)
Q Consensus 62 ~~ei~~~l~~l~~~~p~~~~~~~ 84 (167)
.+-+.-.|+.|+++||+.+++..
T Consensus 84 ~e~~~~~l~~La~~Y~~~I~l~~ 106 (109)
T COG2868 84 LESMILGLKTLAESYPEYIKLVV 106 (109)
T ss_pred HHHHHHHHHHHHHhccccEEEEE
Confidence 45677788999999999998765
No 100
>PRK14553 hypothetical protein; Provisional
Probab=29.47 E-value=94 Score=20.95 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEE
Q psy13505 62 EFVINSYLKHIARIYGHKVNVST 84 (167)
Q Consensus 62 ~~ei~~~l~~l~~~~p~~~~~~~ 84 (167)
.+.+.--|+.++++||+++++..
T Consensus 83 l~~~~~gl~~i~~~Yp~~Iki~~ 105 (108)
T PRK14553 83 LETLELGLKSLEFQYPKYIKLIE 105 (108)
T ss_pred HHHHHHHHHHHHHhCcccEEEEE
Confidence 45566677899999999998764
No 101
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=28.27 E-value=34 Score=28.42 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=24.6
Q ss_pred CCCCccchhhccccCceeEEEEEEeeCCCCCCccCCchhhhh
Q psy13505 2 GVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRK 43 (167)
Q Consensus 2 ~~~~g~s~D~~~~~~~~~~s~t~el~d~g~~gf~lP~~~i~~ 43 (167)
|+.+|+=.||.|...+ -+.-|+|+.|. +..|++++..
T Consensus 233 y~~~g~mqd~~y~~~~-~~e~t~e~~~~----k~P~~~~l~~ 269 (363)
T cd06245 233 NSHLGSMKDFSVDFGH-CPEITVYTSCC----LFPSASQLPD 269 (363)
T ss_pred ecccCCcchhhhhhcC-CceeEEEeccc----cCCCHHHHHH
Confidence 6678999999996433 36667887543 5566666653
No 102
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=26.81 E-value=1.3e+02 Score=18.16 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred ccccCCeeeEEEEEecCC------CCCcEEEEEcccC
Q psy13505 86 GETIEGRPIQAVKISHGG------VGNPIIVLDGGIH 116 (167)
Q Consensus 86 g~S~~gr~i~~~~i~~~~------~~k~~v~i~~~~H 116 (167)
=.|.+|.-+.+-+|..++ ..||.|++.-|+-
T Consensus 17 V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~ 53 (63)
T PF04083_consen 17 VTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLL 53 (63)
T ss_dssp EE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT
T ss_pred EEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcc
Confidence 367889999999987655 5688888887665
No 103
>PF13941 MutL: MutL protein
Probab=26.41 E-value=4.3e+02 Score=22.88 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=37.7
Q ss_pred Cc-EEEEEcccCCCCCccHHHHHHHHHHHh-----------cC----CCchhhhc--CceEEEEecccCc
Q psy13505 106 NP-IIVLDGGIHAREWIAPATVLYVLQQLM-----------EN----PENFPMFR--KVDWILIPMLNPD 157 (167)
Q Consensus 106 k~-~v~i~~~~H~~E~~~~~~~~~~~~~l~-----------~~----~~~~~ll~--~~~~~iiP~~NPD 157 (167)
+| .|++.||.-|++. +.+++.++.|. .| ++++++|+ +..+++++.+=|+
T Consensus 124 ~PDiILLaGGtDgG~~---~~il~nA~~La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~ 190 (457)
T PF13941_consen 124 RPDIILLAGGTDGGNK---EVILHNAEMLAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPK 190 (457)
T ss_pred CCCEEEEeCCccCCch---HHHHHHHHHHHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 55 8889999998886 78888888877 12 46788888 6888888877664
No 104
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=26.03 E-value=59 Score=19.77 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcCCcEE
Q psy13505 63 FVINSYLKHIARIYGHKVN 81 (167)
Q Consensus 63 ~ei~~~l~~l~~~~p~~~~ 81 (167)
+|+..||++|.+++|++..
T Consensus 5 Se~TqFl~~lk~~~Pele~ 23 (60)
T PF11943_consen 5 SEITQFLNQLKAKHPELEE 23 (60)
T ss_pred CHHHHHHHHHHHhCCchHH
Confidence 5789999999999998654
No 105
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....
Probab=24.66 E-value=2.5e+02 Score=19.57 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEecccc--CCeeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHhcCC
Q psy13505 60 EREFVINSYLKHIARIYGHKVNVSTIGETI--EGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENP 137 (167)
Q Consensus 60 ~t~~ei~~~l~~l~~~~p~~~~~~~ig~S~--~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~~~~ 137 (167)
.+.+++.++++.+.+..+=-+-.+..+... ....+.++.+..+. .+++.-.++..+.. +...++.+++|+
T Consensus 5 ~~~~~l~~~~~~l~~~~~~a~D~E~~~~~~~~~~~~~~~iq~~~~~----~~~i~~~~~~~~~~----~~~~l~~ll~~~ 76 (176)
T PF01612_consen 5 DTEEELEEAIKKLKNAKVLAFDTETTGLDPYSYNPKIALIQLATGE----GCYIIDPIDLGDNW----ILDALKELLEDP 76 (176)
T ss_dssp HSHHHHHHHHHHHTTTSEEEEEEEEETSTSTTSSEEEEEEEEEESC----EEEEECGTTSTTTT----HHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEEECCCCccccCCeEEEEEEecCC----Cceeeeeccccccc----hHHHHHHHHhCC
Confidence 467889999999977643224456665544 56778888887764 44444444444422 666777777666
Q ss_pred Cchh
Q psy13505 138 ENFP 141 (167)
Q Consensus 138 ~~~~ 141 (167)
.+.+
T Consensus 77 ~i~k 80 (176)
T PF01612_consen 77 NIIK 80 (176)
T ss_dssp TSEE
T ss_pred CccE
Confidence 5533
No 106
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=24.38 E-value=37 Score=22.09 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.3
Q ss_pred CchhhhcCceEEEEecc
Q psy13505 138 ENFPMFRKVDWILIPML 154 (167)
Q Consensus 138 ~~~~ll~~~~~~iiP~~ 154 (167)
.+-++|+.++|-+|||-
T Consensus 65 AVsqVLkGYDWtLVPmP 81 (84)
T PF12444_consen 65 AVSQVLKGYDWTLVPMP 81 (84)
T ss_pred HHHHHhccCCceeeecc
Confidence 35788999999999983
No 107
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=24.25 E-value=80 Score=25.52 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCcEEEEEe
Q psy13505 59 IEREFVINSYLKHIARIYGHKVNVSTI 85 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~~~~~~~i 85 (167)
+.+.+|+.+++.+|.++|| +++++.-
T Consensus 132 ~~s~delid~y~~li~~YP-IvsIEDp 157 (295)
T PF00113_consen 132 YKSSDELIDYYKDLIKKYP-IVSIEDP 157 (295)
T ss_dssp EEEHHHHHHHHHHHHHHS--EEEEESS
T ss_pred ccCHHHHHHHHHHHHHhcC-eEEEEcc
Confidence 4678999999999999999 7777654
No 108
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=24.19 E-value=71 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.2
Q ss_pred cccCCee--eEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHH
Q psy13505 87 ETIEGRP--IQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLY 128 (167)
Q Consensus 87 ~S~~gr~--i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~ 128 (167)
.++.|.. +..-++ .+|+.+++.+|+|+.|-..+..+.+
T Consensus 34 ~~~~g~~~~~~~G~i----~g~~Vv~~~~~iH~~~Gk~~a~i~~ 73 (249)
T TIGR01700 34 STVVGHAGNLVFGIL----GGKPVVAMQGRFHMYEGYDMAKVTF 73 (249)
T ss_pred CCCCCCCccEEEEEE----CCEEEEEEcCCccccCCcCHHHccH
Confidence 4455543 444444 3678999999999999877777665
No 109
>COG1647 Esterase/lipase [General function prediction only]
Probab=23.63 E-value=42 Score=26.23 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH-HHcCCcEEEEEeccccCCeeeEEEEEecCCCCCcEEEEEcccCCCCCccH
Q psy13505 63 FVINSYLKHIA-RIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAP 123 (167)
Q Consensus 63 ~ei~~~l~~l~-~~~p~~~~~~~ig~S~~gr~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~ 123 (167)
++..+-++.|. +.|+ ++...|-|..| +.+++++..-+-|+.|.+.+.+|.-+|-..
T Consensus 70 ~~v~d~Y~~L~~~gy~---eI~v~GlSmGG--v~alkla~~~p~K~iv~m~a~~~~k~~~~i 126 (243)
T COG1647 70 EDVEDGYRDLKEAGYD---EIAVVGLSMGG--VFALKLAYHYPPKKIVPMCAPVNVKSWRII 126 (243)
T ss_pred HHHHHHHHHHHHcCCC---eEEEEeecchh--HHHHHHHhhCCccceeeecCCcccccchhh
Confidence 44455555555 3343 45556777766 344555555567899999999998877543
No 110
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.33 E-value=41 Score=17.59 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=14.0
Q ss_pred hhhcCceEEEEecccCceeeeeee
Q psy13505 141 PMFRKVDWILIPMLNPDGYVYSMT 164 (167)
Q Consensus 141 ~ll~~~~~~iiP~~NPDG~~~~~~ 164 (167)
++.+.-....-|...|||......
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEE
Confidence 334444456789999999754433
No 111
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=22.01 E-value=1.3e+02 Score=22.02 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCchhhhcCceEEEEecccCcee
Q psy13505 125 TVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGY 159 (167)
Q Consensus 125 ~~~~~~~~l~~~~~~~~ll~~~~~~iiP~~NPDG~ 159 (167)
.+..+++.++ .+ ++++.|++=+.+||||.
T Consensus 113 ~a~~~vK~il-----~n-fkd~qFf~Gesm~~dgm 141 (165)
T PF00838_consen 113 GAQEFVKKIL-----AN-FKDYQFFTGESMDPDGM 141 (165)
T ss_dssp HHHHHHHHHH-----HT-GGGCEEEEETTCCTTS-
T ss_pred HhHHHHHHHH-----hh-ccccccccccccCCCCc
Confidence 3445666776 33 68899999999999995
No 112
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=21.29 E-value=93 Score=16.83 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=12.1
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q psy13505 55 FARFIEREFVINSYLKHIA 73 (167)
Q Consensus 55 ~~~~y~t~~ei~~~l~~l~ 73 (167)
|.+.| .++++.|++++.
T Consensus 8 fiery--fddiqkwirnit 24 (40)
T PF13124_consen 8 FIERY--FDDIQKWIRNIT 24 (40)
T ss_pred HHHHH--HHHHHHHHHHHH
Confidence 34444 688999998764
No 113
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=20.41 E-value=3.6e+02 Score=23.28 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeccccCC------eeeEEEEEecCCCCCcEEEEEcccCCCCCccHHHHHHHHHHHh
Q psy13505 61 REFVINSYLKHIARIYGHKVNVSTIGETIEG------RPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM 134 (167)
Q Consensus 61 t~~ei~~~l~~l~~~~p~~~~~~~ig~S~~g------r~i~~~~i~~~~~~k~~v~i~~~~H~~E~~~~~~~~~~~~~l~ 134 (167)
..+++...++...+++|.-+++...|....| ++|.++.+-.....+.. -|..|......+++.+.
T Consensus 23 ~~~~l~~~L~~~~~~~~~~~~V~l~GS~ArgT~L~GdsDIDIFv~fp~~~~~e~---------L~~~gl~i~~~~~~~~~ 93 (447)
T PRK13300 23 VAEELIERLEEAIKELGLDAEVELVGSTARGTWLSGDRDIDIFVLFPKDTSREE---------LEEKGLEIGKEVAKELL 93 (447)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeeecCCcccCCCCceeEEEEeCCCCCHHH---------HHHHHHHHHHHHHHhhC
Confidence 3567777888877777743666666765554 46666655433211110 02333444444544433
Q ss_pred --------cCCCchhhhcCceEEEEecccCcee
Q psy13505 135 --------ENPENFPMFRKVDWILIPMLNPDGY 159 (167)
Q Consensus 135 --------~~~~~~~ll~~~~~~iiP~~NPDG~ 159 (167)
+.|-++-..+.+++-||||++-+.-
T Consensus 94 ~~~~~~yaeHpyv~~~~~G~~VDiVPcy~v~~~ 126 (447)
T PRK13300 94 GDYEERYAEHPYVTGEIDGFEVDIVPCYKVESG 126 (447)
T ss_pred CcceeeeccCceEEEEECCEEEEEEeeEEccCc
Confidence 4567777888999999999987643
No 114
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=20.19 E-value=3.2e+02 Score=21.64 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHcCC--cEEEEE--ec--cccCCeeeEEEEEecCCCCCcEEEEEc-ccCCCCCccHHHHHHHHH
Q psy13505 59 IEREFVINSYLKHIARIYGH--KVNVST--IG--ETIEGRPIQAVKISHGGVGNPIIVLDG-GIHAREWIAPATVLYVLQ 131 (167)
Q Consensus 59 y~t~~ei~~~l~~l~~~~p~--~~~~~~--ig--~S~~gr~i~~~~i~~~~~~k~~v~i~~-~~H~~E~~~~~~~~~~~~ 131 (167)
...=.-|+..|..||++||. ++++.. ++ .-+.-+-+++|-+=.+. .-.--+++ .-++++-..+.- ++
T Consensus 158 ~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G--~l~~~~V~l~~~~g~df~~~d----lE 231 (265)
T PF02114_consen 158 FPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNG--DLIGNFVGLTDLLGDDFFTED----LE 231 (265)
T ss_dssp SCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETT--EEEEEECTGGGCT-TT--HHH----HH
T ss_pred CchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECC--EEEEeEEehHHhcCCCCCHHH----HH
Confidence 33456799999999999996 344333 12 12333455555554432 11111222 224444333333 34
Q ss_pred HHhcCCCchhhhcCceEEEEecccCceeeeeeecC
Q psy13505 132 QLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166 (167)
Q Consensus 132 ~l~~~~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~ 166 (167)
.+|.. ..+|.+-.+.++...|.++-.++-.+|
T Consensus 232 ~~L~~---~G~l~~k~~~~~~~~~~~~~~~s~d~d 263 (265)
T PF02114_consen 232 AFLIE---YGVLPEKDSRLLTSSNNSANADSDDSD 263 (265)
T ss_dssp HHHHT---TTSSS----------------------
T ss_pred HHHHH---cCCCCCcccchhhhcccccccCccccc
Confidence 44411 234556667777777776655554443
Done!