RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13505
(167 letters)
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 136 bits (344), Expect = 5e-40
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLDGGIHAREWI 121
I+ YL +I Y V E+ EGRPI+ +KIS P+I +DGGIHAREWI
Sbjct: 12 IDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIFIDGGIHAREWI 71
Query: 122 APATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
+P +V + + +L+E+ + K DWIL+P++NPDGY Y+ T +
Sbjct: 72 SPPSVTWAIHKLVEDVTENDLLEKFDWILLPVVNPDGYKYTFTNE 116
Score = 69.3 bits (170), Expect = 9e-15
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELP--RGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIERE 62
+G S+D+ +GV YT ELP G GF LP I +V + +EG+ V AR
Sbjct: 252 AGSSEDYAHS-IGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVGARRAGDL 310
Query: 63 F 63
F
Sbjct: 311 F 311
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 135 bits (341), Expect = 1e-39
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I ++ + + V+ IG + EGRPI +K S GG P I +D GIH+REWI A
Sbjct: 18 IYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQA 77
Query: 125 TVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
T ++ ++ E+ P + +D L + NPDG+ ++ +++
Sbjct: 78 TGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 65.5 bits (160), Expect = 2e-13
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+ SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 247 IYQASGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHT 304
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 134 bits (340), Expect = 2e-39
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAP 123
I + +IA + IG + E RP+ +K S G GV P + L+ GIH+REWI+
Sbjct: 16 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQ 75
Query: 124 ATVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
AT ++ ++++ + + P + K+D L+P+ NPDGYVY+ T++
Sbjct: 76 ATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 122
Score = 72.4 bits (178), Expect = 6e-16
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREF 63
SG S DW G+K+ +T EL G GF LP +QI + + G+K +
Sbjct: 250 SGSSIDWAYD-NGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEHVRDNL 307
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 134 bits (338), Expect = 3e-39
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I ++ K + ++ + IG T G I +K+ G P I +D G HAREWI+ A
Sbjct: 15 IEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISHA 74
Query: 125 TVLYVLQQLME----NPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
+ +++ + K+D+ ++P+LN DGY+Y+ TK+
Sbjct: 75 FCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKN 120
Score = 67.4 bits (165), Expect = 3e-14
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIE 60
+ +GGSDDW G+KY +T EL G GF LP QI+ + +K ++
Sbjct: 245 IYPAAGGSDDWAYD-QGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYVL 303
Query: 61 REF 63
Sbjct: 304 GHL 306
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 128 bits (324), Expect = 4e-37
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN-PIIVLDGGIHAREWIAP 123
I S+++ + Y V IG + E P+ +K+S + +D GIHAREWI+P
Sbjct: 15 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISP 74
Query: 124 ATVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
A L+ + + + + +D+ ++P++N DGY Y+ KD
Sbjct: 75 AFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKD 121
Score = 71.3 bits (175), Expect = 2e-15
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIERE 62
GGSDDW+ +G+KY +T EL G GF LP IR + V A + +
Sbjct: 252 PGGSDDWIYD-LGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKN 308
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 128 bits (323), Expect = 7e-37
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAREWI 121
+ + + +A Y + V +IG++ EGR + AVKIS P ++ HARE +
Sbjct: 15 MVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHL 74
Query: 122 APATVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
LY L +N + + ++ +NPDG Y ++
Sbjct: 75 TVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSG 123
Score = 62.0 bits (151), Expect = 3e-12
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 5 SGGSDDWVKGYVGVKYCYTVEL-PRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREF 63
GG DDW G + +T E+ P GF P++ I + E V A + +
Sbjct: 258 DGGMDDWAYG-QHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPY 316
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 129 bits (327), Expect = 9e-37
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I+ + ++ + V+ IG + E RP+ +K S GG P I LD GIHAREW+ A
Sbjct: 111 ISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWVTQA 169
Query: 125 TVLYVLQQLME----NPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
T L+ +++ +P + +D L+P+ NPDGYV+S TK+
Sbjct: 170 TALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKN 215
Score = 70.2 bits (172), Expect = 6e-15
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
SGGS DW G+KY + EL G GF LP QI + + G+K +
Sbjct: 343 SGGSIDWSYD-YGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEHV 396
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 127 bits (320), Expect = 1e-36
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I+ + ++ + V+ IG + E RP+ +K S GG P I LD GIHAREW+ A
Sbjct: 12 ISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWVTQA 70
Query: 125 TVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
T L+ +++ + P + +D L+P+ NPDGYV+S TK+
Sbjct: 71 TALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKN 116
Score = 64.4 bits (157), Expect = 5e-13
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 1 MGVNSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+ SGGS DW G+KY + EL G GF LP QI + + G+K +
Sbjct: 241 IYQASGGSIDWSYD-YGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEHV 298
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 127 bits (322), Expect = 5e-36
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I ++ + + V+ IG + EGRPI +K S GG P I +D GIH+REWI A
Sbjct: 113 IYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDSGIHSREWITQA 172
Query: 125 TVLYVLQQLME----NPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
+ ++ +++ E N + +D L + NP+G+ ++ + +
Sbjct: 173 SGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFAFTHSDN 218
Score = 69.8 bits (171), Expect = 7e-15
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIERE 62
SGG DW G+KY ++ EL G +GF LP QI + + +
Sbjct: 346 SGGVIDWTYN-QGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLALLTIMEHTLNN 402
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 127 bits (320), Expect = 9e-36
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I ++ + +A ++ S IG T EGR I +K+ G P I +D G HAREWI+PA
Sbjct: 110 IEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIFMDCGFHAREWISPA 169
Query: 125 TVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
+ +++ + + K+D+ ++P+LN DGY+Y+ TK
Sbjct: 170 FCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTKS 215
Score = 72.5 bits (178), Expect = 8e-16
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREF 63
+GGSDDW G++Y +T EL G GF LP QIR + F +K A ++
Sbjct: 344 AGGSDDWAYD-QGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVASYVLEHL 401
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 127 bits (320), Expect = 1e-35
Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN---PIIVLDGGIHAREWI 121
+++YL+ +A+ + + V V G++ EGR I+ ++IS + P++++ +H REW+
Sbjct: 127 VDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDASKPVVMMQSLLHCREWV 186
Query: 122 APATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
LY + +L+ + + +DWI++P+ NPDGYV++ D
Sbjct: 187 TLPATLYAIHKLVIDVTESDLINNIDWIILPVANPDGYVHTFGGD 231
Score = 69.9 bits (171), Expect = 9e-15
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELP----RGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIE 60
SGG+ D+ + YT ELP GF + D I + + +EG+KV AR
Sbjct: 363 SGGASDYAMQ-AAAPFSYTYELPAYRNSVWFDGFLVDPDFIEQAGFETWEGIKVGARAAA 421
Query: 61 REFVINSYLK 70
L
Sbjct: 422 AAAKELKKLN 431
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 124 bits (314), Expect = 6e-35
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAP 123
I + +IA + IG + E RP+ +K S G GV P + L+ GIH+REWI+
Sbjct: 112 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQ 171
Query: 124 ATVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
AT ++ ++++ + + P + K+D L+P+ NPDGYVY+ T++
Sbjct: 172 ATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 218
Score = 72.5 bits (178), Expect = 9e-16
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREF 63
SG S DW G+K+ +T EL G GF LP +QI + + G+K +
Sbjct: 346 SGSSIDWAYD-NGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEHVRDNL 403
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 124 bits (313), Expect = 9e-35
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN-PIIVLDGGIHAREWIAP 123
I S+++ + Y V IG + E P+ +K+S + +D GIHAREWI+P
Sbjct: 107 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISP 166
Query: 124 ATVLYVLQQLME----NPENFPMFRKVDWILIPMLNPDGYVYSMTKD 166
A L+ + + + + + +D+ ++P++N DGY Y+ KD
Sbjct: 167 AFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKD 213
Score = 71.0 bits (174), Expect = 3e-15
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIER 61
GGSDDW+ +G+KY +T EL G GF LP IR + V A + +
Sbjct: 344 PGGSDDWIYD-LGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVK 399
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 115 bits (289), Expect = 2e-31
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGIHAREW 120
+ +L+ A Y + ++G+++E R + ++IS G P G +H E
Sbjct: 16 MEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEV 75
Query: 121 IAPATVLYVLQQLMENPENFPMFRK----VDWILIPMLNPDGYVYSMTKD 166
+ +L +++ L +N P ++P +NPDGY S D
Sbjct: 76 VGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGD 125
Score = 32.1 bits (73), Expect = 0.064
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 25/111 (22%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIEREFV 64
GG DW + T+EL +++ K +
Sbjct: 250 PGGMQDWNY-LNTNCFEVTIELG----CVKYPKAEELPKYWEQNRRSLL----------- 293
Query: 65 INSYLKHIAR-IYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGG 114
++K + R I+G + + +GR I IS + +P+ G
Sbjct: 294 --QFIKQVHRGIWG------FVLDATDGRGILNATISVADINHPVTTYKDG 336
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 115 bits (288), Expect = 5e-31
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREW 120
+ + + Y ++ V +G ++EGR + A++IS + P + +H E
Sbjct: 46 LEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDET 105
Query: 121 IAPATVLYVLQQLMENPENFPMFRK----VDWILIPMLNPDGYVYSMTKD 166
+ ++Y+ Q L+ N E + D L+P +NPDGY S +
Sbjct: 106 VGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGN 155
Score = 33.0 bits (75), Expect = 0.035
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 6/37 (16%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQI 41
SGG D+ + T+EL P
Sbjct: 286 SGGMQDFNYA-FSNCFELTIELS-----CCKYPAAST 316
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 112 bits (281), Expect = 4e-30
Identities = 21/110 (19%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREW 120
+ ++LK +A+ Y ++ +IG++++GR + + + +G P +H E
Sbjct: 11 MEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDET 70
Query: 121 IAPATVLYVLQQLMENPENFPMFRK----VDWILIPMLNPDGYVYSMTKD 166
+ +L+++ L+ + P ++P +NPDG+ D
Sbjct: 71 VGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPD 120
Score = 30.0 bits (67), Expect = 0.33
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQI 41
GG D+ + T+EL P ++
Sbjct: 245 QGGMQDYNYI-WAQCFEITLELSCCK-----YPREEK 275
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 112 bits (280), Expect = 6e-30
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGIHAREW 120
+ L + V +IG ++EGR + ++ S P + G +H E
Sbjct: 12 LVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEA 71
Query: 121 IAPATVLYVLQQLMENPENFP-----MFRKVDWILIPMLNPDGYVYSMTKD 166
+ +L + + L E N + + ++P +NPDGY + +
Sbjct: 72 LGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQG 122
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 79.1 bits (194), Expect = 5e-18
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 78 HKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM--E 135
V+ +G T++GR + VK+ I + H E +A V +L QL+ +
Sbjct: 147 PLVSTEHLGLTLDGRDMTLVKVGDDDPSKKSIWITARQHPGETMAEWLVEGLLNQLLDND 206
Query: 136 NPENFPMFRKVDWILIPMLNPDGYVYS 162
P + + K ++ ++P +NPDG V
Sbjct: 207 CPTSKALLDKANFYIVPNMNPDGSVRG 233
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 70.6 bits (172), Expect = 2e-15
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 57 RFIEREFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIH 116
F + I+++ +A +++ I + + P +++ G H
Sbjct: 17 IFNCQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSDLPSLLISSGFH 76
Query: 117 AREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGY 159
E P +L+ L+ L +F +V+ L+P++NP G+
Sbjct: 77 GEEAAGPWGMLHFLRGLQPA-----LFERVNLSLLPLVNPTGF 114
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 67.4 bits (164), Expect = 3e-14
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 57 RFIEREFVINSYLKHIARIYG---HKVNVSTIGETIEGR----PIQAVKISHGGVGNPII 109
F+ R + I R Y + +G I G+ P+ ++ G P +
Sbjct: 9 TFVWRSEIFECQSTDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNL 68
Query: 110 VLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGY 159
++ G H E P +L+ L QL +F++V+ ++P++NP G+
Sbjct: 69 LISAGFHGEESAGPWGLLHFLSQLDGE-----LFKRVNLSVLPLVNPTGF 113
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 51.3 bits (122), Expect = 2e-08
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 80 VNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLM--ENP 137
V +G +++GR I+ +++ + + + H E +A + ++++L ++
Sbjct: 144 VERLAVGTSVQGRDIELLRVRRHPDSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRPDDT 203
Query: 138 ENFPMFRKVDWILIPMLNPDGYVYSMTK 165
E + K D L+P +NPDG + +
Sbjct: 204 EMQRLLEKADLYLVPNMNPDGAFHGNLR 231
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 49.0 bits (116), Expect = 1e-07
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 78 HKVNVSTIGETIEGRPIQAVKISHGGVGNP---IIVLDGGIHAREWIAPATVLYVLQQLM 134
+ +V +G T+EGRP+ V + + + H E +A + ++++L+
Sbjct: 149 PQASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLV 208
Query: 135 E------NPENFPMFRKVDWILIPMLNPDGYVY 161
+P ++ + ++P +NPDG V+
Sbjct: 209 GWGDWSGDPVARKLYDHATFYIVPNMNPDGSVH 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.079
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 31/105 (29%)
Query: 23 TVEL--PRGGAQGFDLPNDQIRKVVHDMF-------------EGVKVFARFIER---EFV 64
VE+ RG +P D++ + + M E ++ + + V
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 65 -I---NS----YLKHIARIYGHKVNVSTIGETIEGRPIQAVKISH 101
I N Y+ A G + T+ + +Q + I
Sbjct: 1842 EIVNYNVENQQYV--AA---GDLRALDTVTNVLNFIKLQKIDIIE 1881
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.33
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 56/170 (32%)
Query: 4 NSGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPN-DQIRKVVHDMFEGVKVFA--RFIE 60
+ ++ Y Y + G L N + ++ +F VF RF+E
Sbjct: 461 SDDLIPPYLDQYF---YSHI---------GHHLKNIEHPERM--TLFR--MVFLDFRFLE 504
Query: 61 REFVINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREW 120
++ ++H + A G + N + L + +
Sbjct: 505 QK------IRH------------------DSTAWNAS----GSILNTLQQLK---FYKPY 533
Query: 121 IAPATVLY------VLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164
I Y +L L + EN + D + I ++ D ++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 27.9 bits (61), Expect = 1.5
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 41 IRKVVHDMFEGVKVFARFIEREFVINSYLKHIARIYGHKVN-----VSTIGETIEGRPIQ 95
+ V + E +++ +V ++ I V + G
Sbjct: 69 AKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128
Query: 96 AVKISHGGVGNPIIVLD-GGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILI 151
V + +++LD A LY L ++ E + ++ ++L+
Sbjct: 129 LVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLV 185
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 27.2 bits (61), Expect = 2.8
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 72 IARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAR 118
++ + E + + G I+ G H R
Sbjct: 146 TIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGR 192
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 26.2 bits (58), Expect = 5.9
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 35 DLPNDQIRKVVHDMFEGVKVFARFIEREFVINSYLK 70
D I+ V D + + F + I+ INS+
Sbjct: 317 APRTDLIQSVQFDDKDRMIAFCQAIQYASPINSHFT 352
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron,
metal-bindi mitochondrion, protein biosynthesis,
transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB:
3g5p_A
Length = 183
Score = 25.6 bits (57), Expect = 7.5
Identities = 1/17 (5%), Positives = 8/17 (47%)
Query: 34 FDLPNDQIRKVVHDMFE 50
L +++++ + +
Sbjct: 25 AQLGGPELQRLTQRLVQ 41
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher
plant, zinc ION, hydrolase; 2.80A {Arabidopsis
thaliana} PDB: 1zy0_A 1zy1_A
Length = 197
Score = 25.3 bits (56), Expect = 9.0
Identities = 4/17 (23%), Positives = 13/17 (76%)
Query: 34 FDLPNDQIRKVVHDMFE 50
++ +++I+K++ DM +
Sbjct: 24 GEIGSERIQKIIDDMIK 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.143 0.445
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,850,354
Number of extensions: 172657
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 53
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)