RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13505
(167 letters)
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 94.9 bits (235), Expect = 1e-24
Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLDGGIHAREWI 121
+++YL+ +A+ + + V V G++ EGR I+ ++IS P++++ +H REW+
Sbjct: 18 VDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDASKPVVMMQSLLHCREWV 77
Query: 122 APATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164
LY + +L+ + + +DWI++P+ NPDGYV++
Sbjct: 78 TLPATLYAIHKLVIDVTESDLINNIDWIILPVANPDGYVHTFG 120
Score = 60.6 bits (146), Expect = 4e-12
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELP----RGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
SGG+ D+ + YT ELP GF + D I + + +EG+KV AR
Sbjct: 254 SGGASDYAMQ-AAAPFSYTYELPAYRNSVWFDGFLVDPDFIEQAGFETWEGIKVGARAA 311
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 94.5 bits (234), Expect = 2e-24
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I ++ + + V+ IG + EGRPI +K S GG P I +D GIH+REWI A
Sbjct: 18 IYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWITQA 77
Query: 125 TVLYVLQQLMENPENFPMFR----KVDWILIPMLNPDGYVYSMTKD 166
T ++ ++ E+ P F +D L + NPDG+ ++ +++
Sbjct: 78 TGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQN 123
Score = 59.1 bits (142), Expect = 1e-11
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
SGGS DW G+KY +T EL G GF LP QI + + GV
Sbjct: 251 SGGSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHT 304
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 93.3 bits (231), Expect = 5e-24
Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLDGGIHAREWI 121
I+ YL +I Y V E+ EGRPI+ +KIS P+I +DGGIHAREWI
Sbjct: 12 IDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIFIDGGIHAREWI 71
Query: 122 APATVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYSMT 164
+P +V + + +L+E+ + K DWIL+P++NPDGY Y+ T
Sbjct: 72 SPPSVTWAIHKLVEDVTENDLLEKFDWILLPVVNPDGYKYTFT 114
Score = 62.1 bits (150), Expect = 1e-12
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELP--RGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIERE 62
+G S+D+ +GV YT ELP G GF LP I +V + +EG+ V AR
Sbjct: 252 AGSSEDYAHS-IGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVGARRAGDL 310
Query: 63 F 63
F
Sbjct: 311 F 311
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 87.2 bits (215), Expect = 1e-21
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I+ + ++ + V+ IG + E RP+ +K S GG P I LD GIHAREW+ A
Sbjct: 17 ISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWVTQA 75
Query: 125 TVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMTKD 166
T L+ +++ + P + +D L+P+ NPDGYV+S TK+
Sbjct: 76 TALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKN 121
Score = 60.2 bits (145), Expect = 5e-12
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIER 61
SGGS DW G+KY + EL G GF LP QI + + G+K +
Sbjct: 249 SGGSIDWSYD-YGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEHVRD 304
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 85.3 bits (210), Expect = 4e-21
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREW 120
+ +L+ A Y + ++G+++E R + ++IS G P G +H E
Sbjct: 16 MEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEV 75
Query: 121 IAPATVLYVLQQLMENPENFPMFRK----VDWILIPMLNPDGYVYS 162
+ +L +++ L +N P ++P +NPDGY S
Sbjct: 76 VGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKS 121
Score = 31.4 bits (70), Expect = 0.041
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVF 55
GG DW + T+EL +++ K + F
Sbjct: 250 PGGMQDWNYLNTNC-FEVTIELGC----VKYPKAEELPKYWEQNRRSLLQF 295
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 81.4 bits (200), Expect = 1e-19
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 124
I ++ K + ++ + IG T G I +K+ G P I +D G HAREWI+ A
Sbjct: 13 IEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISHA 72
Query: 125 TVLYVLQQLMENPENFPMFR----KVDWILIPMLNPDGYVYSMT 164
+ +++ + K+D+ ++P+LN DGY+Y+ T
Sbjct: 73 FCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWT 116
Score = 62.9 bits (152), Expect = 5e-13
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
+GGSDDW G+KY +T EL G GF LP QI+ + +K ++
Sbjct: 247 AGGSDDWAYD-QGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYV 300
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 80.3 bits (197), Expect = 3e-19
Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHAREW 120
+ ++LK +A+ Y ++ +IG++++GR + + + +G P +H E
Sbjct: 11 MEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDET 70
Query: 121 IAPATVLYVLQQLMENPENFPMFRK----VDWILIPMLNPDGYVYSM 163
+ +L+++ L+ + P ++P +NPDG+
Sbjct: 71 VGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVK 117
Score = 27.5 bits (60), Expect = 0.72
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQI 41
GG D+ + T+EL P ++
Sbjct: 245 QGGMQDYNYI-WAQCFEITLELSCCK-----YPREEK 275
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 80.3 bits (197), Expect = 3e-19
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAREWI 121
+ + + +A Y + V +IG++ EGR + AVKIS P ++ HARE +
Sbjct: 15 MVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHL 74
Query: 122 APATVLYVLQQLMENPENFPMFR----KVDWILIPMLNPDGYVYSMT 164
LY L +N + ++ +NPDG Y ++
Sbjct: 75 TVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDIS 121
Score = 45.7 bits (107), Expect = 6e-07
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 4 NSGGSDDWVKGYVGVKYCYTVEL-PRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFIERE 62
G DW G + + +T E+ P GF P++ I + E V A +
Sbjct: 257 TDGDMTDWAYGQHKI-FAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCP 315
Query: 63 F 63
+
Sbjct: 316 Y 316
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 79.9 bits (196), Expect = 4e-19
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 65 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAP 123
I + +IA + IG + E RP+ +K S G GV P + L+ GIH+REWI+
Sbjct: 15 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQ 74
Query: 124 ATVLYVLQQLMENPENFP----MFRKVDWILIPMLNPDGYVYSMT 164
AT ++ ++++ + + P + K+D L+P+ NPDGYVY+ T
Sbjct: 75 ATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQT 119
Score = 59.9 bits (144), Expect = 6e-12
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 5 SGGSDDWVKGYVGVKYCYTVELPRGGAQGFDLPNDQIRKVVHDMFEGVKVFARFI 59
SG S DW G+K+ +T EL G GF LP +QI + + G+K +
Sbjct: 249 SGSSIDWAYD-NGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEHV 302
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.0 bits (54), Expect = 6.1
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 95 QAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLMENPENFPMFRKVDWILIPML 154
+ + I++ D A +T+ + L + + + + + L
Sbjct: 105 TSDLVQVNKEPYKIMLSDRHPIA------STICFPLSRYLVGDMSPAALPGLLFTLPAEP 158
Query: 155 NPDGYVY 161
V
Sbjct: 159 PGTNLVV 165
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain
II {Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 23.9 bits (51), Expect = 7.8
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 43 KVVHDMFEGVKVFARFIEREFVINSYLKHIARIYGHKV 80
K++ D + G F R SY+ + + +V
Sbjct: 33 KIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERV 70
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 321
Score = 24.4 bits (53), Expect = 8.1
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 35 DLPNDQIRKVVHDMFEGVKVFARFIE--REFVINSY 68
L + Q++ V +F + F E R+F++
Sbjct: 282 HLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 317
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 23.8 bits (51), Expect = 8.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 125 TVLYVLQQLMENPENFPMFRKVDWILIPMLNPDGYVYS 162
VL L++LM + EN P+G YS
Sbjct: 112 VVLQELRRLMMSKENM----------KLPQPPEGQCYS 139
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic
phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens)
[TaxId: 9606]}
Length = 326
Score = 24.2 bits (52), Expect = 9.4
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 34 FDLPNDQIRKVVHDMFEGVKVFARF-IEREFVINSYLKHIARIYGHKV 80
F+L + + MF + + F ++ E + ++ + + Y V
Sbjct: 31 FELSDLETALCTIRMFTDLNLVQNFQMKHEVLCR-WILSVKKNYRKNV 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.143 0.445
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,010
Number of extensions: 33211
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 25
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)