RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13507
(238 letters)
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 136 bits (345), Expect = 3e-39
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 129 DGYVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLD 185
D Y + I+ YL +I Y V E+ EGRPI+ +KIS P+I +D
Sbjct: 4 DNY-QELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIFID 62
Query: 186 GGIHAREWIAPATVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGYVYSMTK 238
GGIHAREWI+P +V + + +LVE+ + K DWIL+P++NPDGY Y+ T
Sbjct: 63 GGIHAREWISPPSVTWAIHKLVEDVTENDLLEKFDWILLPVVNPDGYKYTFTN 115
Score = 136 bits (345), Expect = 3e-39
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGV---GNPIIVLDGGIHAR 90
+ I+ YL +I Y V E+ EGRPI+ +KIS P+I +DGGIHAR
Sbjct: 9 LEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIFIDGGIHAR 68
Query: 91 EWIAPATVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGYVYSMTK 137
EWI+P +V + + +LVE+ + K DWIL+P++NPDGY Y+ T
Sbjct: 69 EWISPPSVTWAIHKLVEDVTENDLLEKFDWILLPVVNPDGYKYTFTN 115
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 135 bits (343), Expect = 6e-39
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 129 DGYVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGG 187
Y +S+ I + +IA + IG + E RP+ +K S G GV P + L+ G
Sbjct: 8 GAY-HSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAG 66
Query: 188 IHAREWIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 238
IH+REWI+ AT ++ +++V + + P + K+D L+P+ NPDGYVY+ T+
Sbjct: 67 IHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQ 121
Score = 135 bits (341), Expect = 1e-38
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREW 92
+ I + +IA + IG + E RP+ +K S G GV P + L+ GIH+REW
Sbjct: 13 LEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREW 72
Query: 93 IAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 137
I+ AT ++ +++V + + P + K+D L+P+ NPDGYVY+ T+
Sbjct: 73 ISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQ 121
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 134 bits (340), Expect = 2e-38
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 129 DGYVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGI 188
Y +++ +I ++ + + V+ IG + EGRPI +K S GG P I +D GI
Sbjct: 10 ATY-HTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
Query: 189 HAREWIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 238
H+REWI AT ++ ++ E+ P + +D L + NPDG+ ++ ++
Sbjct: 69 HSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQ 122
Score = 134 bits (340), Expect = 2e-38
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWI 93
+I ++ + + V+ IG + EGRPI +K S GG P I +D GIH+REWI
Sbjct: 15 LDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGIHSREWI 74
Query: 94 APATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 137
AT ++ ++ E+ P + +D L + NPDG+ ++ ++
Sbjct: 75 TQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQ 122
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 134 bits (339), Expect = 3e-38
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHARE 192
+ I ++ K + ++ + IG T G I +K+ G P I +D G HARE
Sbjct: 10 NNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHARE 69
Query: 193 WIAPATVLYVLQQLVE----NPENFPMFRKVDWILIPMLNPDGYVYSMTK 238
WI+ A + +++ V K+D+ ++P+LN DGY+Y+ TK
Sbjct: 70 WISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTK 119
Score = 134 bits (338), Expect = 3e-38
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWI 93
+ I ++ K + ++ + IG T G I +K+ G P I +D G HAREWI
Sbjct: 12 WETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWI 71
Query: 94 APATVLYVLQQLVE----NPENFPMFRKVDWILIPMLNPDGYVYSMTK 137
+ A + +++ V K+D+ ++P+LN DGY+Y+ TK
Sbjct: 72 SHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTK 119
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 131 bits (332), Expect = 4e-37
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIH 189
++ ++ + + +A Y + V +IG++ EGR + AVKIS P ++ H
Sbjct: 10 HNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHH 69
Query: 190 AREWIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMT 237
ARE + LY L +N + + ++ +NPDG Y ++
Sbjct: 70 AREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDIS 121
Score = 130 bits (330), Expect = 7e-37
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG---GVGNPIIVLDGGIHAR 90
+ ++ + + +A Y + V +IG++ EGR + AVKIS P ++ HAR
Sbjct: 12 YNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAR 71
Query: 91 EWIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMT 136
E + LY L +N + + ++ +NPDG Y ++
Sbjct: 72 EHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDIS 121
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 132 bits (335), Expect = 6e-37
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 102 LQQLVENPENFPMFRKVDWILIPMLNPDGYVYSMTKINSYLKHIARIYGHKVNVSTIGET 161
+Q L++ EN M N Y +++ +I+ + ++ + V+ IG +
Sbjct: 77 VQVLLDK-ENEEMLFNRRRERSGNFNFGAY-HTLEEISQEMDNLVAEHPGLVSKVNIGSS 134
Query: 162 IEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLVE----NPENFPMFR 217
E RP+ +K S GG P I LD GIHAREW+ AT L+ ++V +P +
Sbjct: 135 FENRPMNVLKFSTGG-DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILD 193
Query: 218 KVDWILIPMLNPDGYVYSMTK 238
+D L+P+ NPDGYV+S TK
Sbjct: 194 ALDIFLLPVTNPDGYVFSQTK 214
Score = 129 bits (327), Expect = 7e-36
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWI 93
++I+ + ++ + V+ IG + E RP+ +K S GG P I LD GIHAREW+
Sbjct: 108 LEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWV 166
Query: 94 APATVLYVLQQLVE----NPENFPMFRKVDWILIPMLNPDGYVYSMTK 137
AT L+ ++V +P + +D L+P+ NPDGYV+S TK
Sbjct: 167 TQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTK 214
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 129 bits (325), Expect = 3e-36
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN-PIIVLDGGIHAR 191
+S+ +I S+++ + Y V IG + E P+ +K+S + +D GIHAR
Sbjct: 10 HSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAR 69
Query: 192 EWIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 238
EWI+PA L+ + + + + +D+ ++P++N DGY Y+ K
Sbjct: 70 EWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKK 120
Score = 128 bits (324), Expect = 3e-36
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN-PIIVLDGGIHAREW 92
+I S+++ + Y V IG + E P+ +K+S + +D GIHAREW
Sbjct: 12 LNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREW 71
Query: 93 IAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 137
I+PA L+ + + + + +D+ ++P++N DGY Y+ K
Sbjct: 72 ISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKK 120
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 128 bits (324), Expect = 3e-36
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 129 DGYVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGI 188
Y +++ +I+ + ++ + V+ IG + E RP+ +K S GG P I LD GI
Sbjct: 4 GAY-HTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG-DKPAIWLDAGI 61
Query: 189 HAREWIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 238
HAREW+ AT L+ ++V + P + +D L+P+ NPDGYV+S TK
Sbjct: 62 HAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTK 115
Score = 127 bits (322), Expect = 6e-36
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWI 93
++I+ + ++ + V+ IG + E RP+ +K S GG P I LD GIHAREW+
Sbjct: 9 LEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG-DKPAIWLDAGIHAREWV 67
Query: 94 APATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 137
AT L+ ++V + P + +D L+P+ NPDGYV+S TK
Sbjct: 68 TQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTK 115
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 129 bits (326), Expect = 1e-35
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 102 LQQLVENPENFPMFRKVDWILIPMLNPDGYVYSMTKINSYLKHIARIYGHKVNVSTIGET 161
+Q L++ + + N Y +++ +I ++ + + V+ IG +
Sbjct: 78 VQLLLDEEQEQMFASQGRARTTSTFNYATY-HTLEEIYDFMDILVAEHPALVSKLQIGRS 136
Query: 162 IEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLVE----NPENFPMFR 217
EGRPI +K S GG P I +D GIH+REWI A+ ++ +++ E N +
Sbjct: 137 YEGRPIYVLKFSTGGSNRPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILD 196
Query: 218 KVDWILIPMLNPDGYVYSMTK 238
+D L + NP+G+ ++ +
Sbjct: 197 SMDIFLEIVTNPNGFAFTHSD 217
Score = 127 bits (321), Expect = 5e-35
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWI 93
++I ++ + + V+ IG + EGRPI +K S GG P I +D GIH+REWI
Sbjct: 110 LEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDSGIHSREWI 169
Query: 94 APATVLYVLQQLVE----NPENFPMFRKVDWILIPMLNPDGYVYSMTK 137
A+ ++ +++ E N + +D L + NP+G+ ++ +
Sbjct: 170 TQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFAFTHSD 217
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 129 bits (326), Expect = 2e-35
Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 102 LQQLVEN-PENFPMFRKVDWILIPMLNPDGYVYSMTKINSYLKHIARIYGHKVNVSTIGE 160
+++ +E + L+ D +S ++++YL+ +A+ + + V V G+
Sbjct: 91 VKEQLELEDQLLAAAAAKSNSTRSRLSFDKI-HSYEEVDAYLQELAKEFPNVVTVVEGGK 149
Query: 161 TIEGRPIQAVKISHGGVGN---PIIVLDGGIHAREWIAPATVLYVLQQLVENPENFPMFR 217
+ EGR I+ ++IS + P++++ +H REW+ LY + +LV + +
Sbjct: 150 SFEGRSIKYLRISTTNFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLVIDVTESDLIN 209
Query: 218 KVDWILIPMLNPDGYVYSMT 237
+DWI++P+ NPDGYV++
Sbjct: 210 NIDWIILPVANPDGYVHTFG 229
Score = 128 bits (323), Expect = 4e-35
Identities = 31/106 (29%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN---PIIVLDGGIHAR 90
++++++YL+ +A+ + + V V G++ EGR I+ ++IS + P++++ +H R
Sbjct: 124 YEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDASKPVVMMQSLLHCR 183
Query: 91 EWIAPATVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGYVYSMT 136
EW+ LY + +LV + + +DWI++P+ NPDGYV++
Sbjct: 184 EWVTLPATLYAIHKLVIDVTESDLINNIDWIILPVANPDGYVHTFG 229
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 127 bits (322), Expect = 5e-35
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHARE 192
I ++ + +A ++ S IG T EGR I +K+ G P I +D G HARE
Sbjct: 105 NKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIFMDCGFHARE 164
Query: 193 WIAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 238
WI+PA + +++ V + K+D+ ++P+LN DGY+Y+ TK
Sbjct: 165 WISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTK 214
Score = 127 bits (321), Expect = 5e-35
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWI 93
+ I ++ + +A ++ S IG T EGR I +K+ G P I +D G HAREWI
Sbjct: 107 WETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIFMDCGFHAREWI 166
Query: 94 APATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 137
+PA + +++ V + K+D+ ++P+LN DGY+Y+ TK
Sbjct: 167 SPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTK 214
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 127 bits (321), Expect = 5e-35
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 102 LQQLVENPENFPMFRKVDWILIPMLNPDGYVYSMTKINSYLKHIARIYGHKVNVSTIGET 161
LQ L++N ++ + N Y +S+ I + +IA + IG +
Sbjct: 77 LQALLDNEDDEMQHNEGQERSSNNFNYGAY-HSLEAIYHEMDNIAADFPDLARRVKIGHS 135
Query: 162 IEGRPIQAVKISHG-GVGNPIIVLDGGIHAREWIAPATVLYVLQQLVENPENFP----MF 216
E RP+ +K S G GV P + L+ GIH+REWI+ AT ++ +++V + + P +
Sbjct: 136 FENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSIL 195
Query: 217 RKVDWILIPMLNPDGYVYSMTK 238
K+D L+P+ NPDGYVY+ T+
Sbjct: 196 EKMDIFLLPVANPDGYVYTQTQ 217
Score = 125 bits (315), Expect = 5e-34
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG-GVGNPIIVLDGGIHAREW 92
+ I + +IA + IG + E RP+ +K S G GV P + L+ GIH+REW
Sbjct: 109 LEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREW 168
Query: 93 IAPATVLYVLQQLVENPENFP----MFRKVDWILIPMLNPDGYVYSMTK 137
I+ AT ++ +++V + + P + K+D L+P+ NPDGYVY+ T+
Sbjct: 169 ISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQ 217
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 125 bits (315), Expect = 4e-34
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN-PIIVLDGGIHAR 191
+S+ +I S+++ + Y V IG + E P+ +K+S + +D GIHAR
Sbjct: 102 HSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAR 161
Query: 192 EWIAPATVLYVLQQLVE----NPENFPMFRKVDWILIPMLNPDGYVYSMTK 238
EWI+PA L+ + + + + + +D+ ++P++N DGY Y+ K
Sbjct: 162 EWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKK 212
Score = 124 bits (314), Expect = 5e-34
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGN-PIIVLDGGIHAREW 92
+I S+++ + Y V IG + E P+ +K+S + +D GIHAREW
Sbjct: 104 LNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREW 163
Query: 93 IAPATVLYVLQQLVE----NPENFPMFRKVDWILIPMLNPDGYVYSMTK 137
I+PA L+ + + + + + +D+ ++P++N DGY Y+ K
Sbjct: 164 ISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKK 212
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 116 bits (293), Expect = 5e-31
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 8/129 (6%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGIHA 89
+ +L+ A Y + ++G+++E R + ++IS G P G +H
Sbjct: 13 FSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHG 72
Query: 90 REWIAPATVLYVLQQLVENPENFPMFRK----VDWILIPMLNPDGYVYSMTKINSYLKHI 145
E + +L +++ L +N P ++P +NPDGY S
Sbjct: 73 NEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGR 132
Query: 146 ARIYGHKVN 154
+ +N
Sbjct: 133 NNSNNYDLN 141
Score = 115 bits (289), Expect = 1e-30
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGI 188
+ + + +L+ A Y + ++G+++E R + ++IS G P G +
Sbjct: 11 HHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNM 70
Query: 189 HAREWIAPATVLYVLQQLVENPENFPMFRK----VDWILIPMLNPDGYVYSMTK 238
H E + +L +++ L +N P ++P +NPDGY S
Sbjct: 71 HGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEG 124
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 114 bits (287), Expect = 5e-30
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHA 89
+Q+ + + Y ++ V +G ++EGR + A++IS + P + +H
Sbjct: 43 QEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHG 102
Query: 90 REWIAPATVLYVLQQLVENPENFPMFRK----VDWILIPMLNPDGYVYSMTK 137
E + ++Y+ Q L+ N E + D L+P +NPDGY S
Sbjct: 103 DETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEG 154
Score = 114 bits (287), Expect = 6e-30
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGI 188
S ++ + + Y ++ V +G ++EGR + A++IS + P + +
Sbjct: 41 ASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM 100
Query: 189 HAREWIAPATVLYVLQQLVENPENFPMFRK----VDWILIPMLNPDGYVYSMTK 238
H E + ++Y+ Q L+ N E + D L+P +NPDGY S
Sbjct: 101 HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEG 154
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 113 bits (284), Expect = 1e-29
Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGIHA 89
+ + ++LK +A+ Y ++ +IG++++GR + + + +G P +H
Sbjct: 8 QEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHG 67
Query: 90 REWIAPATVLYVLQQLVENPENFPMFRK----VDWILIPMLNPDGYVYSMTKINSYLKHI 145
E + +L+++ LV + P ++P +NPDG+ Y
Sbjct: 68 DETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGR 127
Query: 146 ARIYGHKVN 154
+ +N
Sbjct: 128 ENYNQYDLN 136
Score = 112 bits (281), Expect = 4e-29
Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGG----VGNPIIVLDGGI 188
+ + ++LK +A+ Y ++ +IG++++GR + + + +G P +
Sbjct: 6 HRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANM 65
Query: 189 HAREWIAPATVLYVLQQLVENPENFPMFRK----VDWILIPMLNPDGYVYS 235
H E + +L+++ LV + P ++P +NPDG+
Sbjct: 66 HGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAV 116
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 113 bits (284), Expect = 2e-29
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 133 YSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGI 188
+ + L + V +IG ++EGR + ++ S P + G +
Sbjct: 7 HRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNM 66
Query: 189 HAREWIAPATVLYVLQQLVENPENFP-----MFRKVDWILIPMLNPDGYVYSMT 237
H E + +L + + L E N + + ++P +NPDGY +
Sbjct: 67 HGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAA 120
Score = 113 bits (284), Expect = 2e-29
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHG----GVGNPIIVLDGGIHA 89
+ + L + V +IG ++EGR + ++ S P + G +H
Sbjct: 9 YDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHG 68
Query: 90 REWIAPATVLYVLQQLVENPENFP-----MFRKVDWILIPMLNPDGYVYSMT 136
E + +L + + L E N + + ++P +NPDGY +
Sbjct: 69 NEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAA 120
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 80.6 bits (198), Expect = 7e-18
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 34 HQQINSYLKHIARIYGHK----VNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHA 89
+ SY +H+ I + V+ +G T++GR + VK+ I + H
Sbjct: 127 YFTPYSYERHLDLISAVQLHPLVSTEHLGLTLDGRDMTLVKVGDDDPSKKSIWITARQHP 186
Query: 90 REWIAPATVLYVLQQLV--ENPENFPMFRKVDWILIPMLNPDGYVYSMTKINSY 141
E +A V +L QL+ + P + + K ++ ++P +NPDG V + N+
Sbjct: 187 GETMAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNMNPDGSVRGHLRTNAV 240
Score = 80.2 bits (197), Expect = 1e-17
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 114 MFRKVDWILIPMLNPDGYVYSMTKINSYLKHIARIYGHK----VNVSTIGETIEGRPIQA 169
++ + L+ + + SY +H+ I + V+ +G T++GR +
Sbjct: 106 EYKDGKLSISVELDCEAIQIAYFTPYSYERHLDLISAVQLHPLVSTEHLGLTLDGRDMTL 165
Query: 170 VKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLV--ENPENFPMFRKVDWILIPML 227
VK+ I + H E +A V +L QL+ + P + + K ++ ++P +
Sbjct: 166 VKVGDDDPSKKSIWITARQHPGETMAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNM 225
Query: 228 NPDGYVYS 235
NPDG V
Sbjct: 226 NPDGSVRG 233
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 69.0 bits (168), Expect = 4e-14
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 35 QQINSYLKHIARIYG---HKVNVSTIGETIEGR----PIQAVKISHGGVGNPIIVLDGGI 87
+ I R Y + +G I G+ P+ ++ G P +++ G
Sbjct: 15 EIFECQSTDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNLLISAGF 74
Query: 88 HAREWIAPATVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGY 131
H E P +L+ L QL +F++V+ ++P++NP G+
Sbjct: 75 HGEESAGPWGLLHFLSQLDGE-----LFKRVNLSVLPLVNPTGF 113
Score = 66.7 bits (162), Expect = 2e-13
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 136 TKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIA 195
T I + +A S I P+ ++ G P +++ G H E
Sbjct: 22 TDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNLLISAGFHGEESAG 81
Query: 196 PATVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGY 232
P +L+ L QL +F++V+ ++P++NP G+
Sbjct: 82 PWGLLHFLSQLDGE-----LFKRVNLSVLPLVNPTGF 113
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 68.7 bits (167), Expect = 4e-14
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 136 TKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIA 195
I+++ +A +++ I + + P +++ G H E
Sbjct: 23 NDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSDLPSLLISSGFHGEEAAG 82
Query: 196 PATVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGY 232
P +L+ L+ L +F +V+ L+P++NP G+
Sbjct: 83 PWGMLHFLRGLQPA-----LFERVNLSLLPLVNPTGF 114
Score = 68.7 bits (167), Expect = 5e-14
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 37 INSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAREWIAPA 96
I+++ +A +++ I + + P +++ G H E P
Sbjct: 25 IDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSDLPSLLISSGFHGEEAAGPW 84
Query: 97 TVLYVLQQLVENPENFPMFRKVDWILIPMLNPDGY 131
+L+ L+ L +F +V+ L+P++NP G+
Sbjct: 85 GMLHFLRGLQPA-----LFERVNLSLLPLVNPTGF 114
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 53.2 bits (127), Expect = 1e-08
Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 28 NHVEKVHQQINSYLKHIARIYGHK----VNVSTIGETIEGRPIQAVKISHGGVGNPIIVL 83
+ V + + S +H + V +G +++GR I+ +++ + + +
Sbjct: 116 SEVRFAYFEPYSRERHARLVERALGIEGVERLAVGTSVQGRDIELLRVRRHPDSHLKLWV 175
Query: 84 DGGIHAREWIAPATVLYVLQQLV--ENPENFPMFRKVDWILIPMLNPDGYVYSMTKINS 140
H E +A + ++++L ++ E + K D L+P +NPDG + + N+
Sbjct: 176 IAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGAFHGNLRTNA 234
Score = 52.1 bits (124), Expect = 4e-08
Identities = 19/110 (17%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 131 YVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHA 190
Y ++ + V +G +++GR I+ +++ + + + H
Sbjct: 122 YFEPYSRERHARLVERALGIEGVERLAVGTSVQGRDIELLRVRRHPDSHLKLWVIAQQHP 181
Query: 191 REWIAPATVLYVLQQLV--ENPENFPMFRKVDWILIPMLNPDGYVYSMTK 238
E +A + ++++L ++ E + K D L+P +NPDG + +
Sbjct: 182 GEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGAFHGNLR 231
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 52.9 bits (126), Expect = 2e-08
Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 34 HQQINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNP---IIVLDGGIHAR 90
++ + +L + ++ +V +G T+EGRP+ V + + + H
Sbjct: 135 EERHSEFLGAVQQMPQ--ASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIARQHPG 192
Query: 91 EWIAPATVLYVLQQLVE------NPENFPMFRKVDWILIPMLNPDGYVYSMTKINSYLKH 144
E +A + ++++LV +P ++ + ++P +NPDG V+ + N+ +
Sbjct: 193 ESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGAN 252
Query: 145 IARIYGH 151
+ R +
Sbjct: 253 LNREWME 259
Score = 50.6 bits (120), Expect = 1e-07
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 131 YVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNP---IIVLDGG 187
YS + + +L + ++ +V +G T+EGRP+ V + + +
Sbjct: 131 EPYSEERHSEFLGAVQQMPQ--ASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIAR 188
Query: 188 IHAREWIAPATVLYVLQQLVE------NPENFPMFRKVDWILIPMLNPDGYVY 234
H E +A + ++++LV +P ++ + ++P +NPDG V+
Sbjct: 189 QHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVH 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 7e-05
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 64/168 (38%)
Query: 103 QQLVENPENFPMFRKVDWILIPMLNPDGYVYSMTKINSYLKHIARIYGHKVNVSTIGETI 162
+ +V++ + + + D + D Y YS HI + H N+
Sbjct: 447 RSIVDH---YNIPKTFDSDDLIPPYLDQYFYS---------HIG--H-HLKNIEHPERMT 491
Query: 163 EGRP-------IQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLVENPENF-- 213
R ++ KI H W A ++L LQQL + + +
Sbjct: 492 LFRMVFLDFRFLEQ-KIRHDSTA--------------WNASGSILNTLQQL-KFYKPYIC 535
Query: 214 ---PMF-RKVDWIL--------------------IPMLNPDGYVYSMT 237
P + R V+ IL I ++ D ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 31.0 bits (69), Expect = 0.43
Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 59/167 (35%)
Query: 16 NKIDENVNTTR-LNHVEKVHQQINSYL-KHIARIYGHKVNVSTIGETIEGRP-------I 66
I ++ N + + + + ++ Y HI + H N+ R +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--H-HLKNIEHPERMTLFRMVFLDFRFL 503
Query: 67 QAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLVENPENF-----PMF-RKVDW 120
+ KI H W A ++L LQQL + + + P + R V+
Sbjct: 504 EQ-KIRHDSTA--------------WNASGSILNTLQQL-KFYKPYICDNDPKYERLVNA 547
Query: 121 IL--------------------IPMLNPDGYVYSMTKINSYLKHIAR 147
IL I ++ D ++ K + R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA-----HKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.031
Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 69/158 (43%)
Query: 49 GHKVNVSTIGE-----------TIE---------GRPIQ-AVKISHGGVGNPII--VLDG 85
GH S +GE +IE G +Q AV G N + + G
Sbjct: 1761 GH----S-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 86 GIHAREWIAPATVLYVLQQ-------LVENPENFPMFRKVDWILIPMLNPDG--YVYSMT 136
+ A + + YV+++ LVE N+ N + YV
Sbjct: 1816 RVAAS--FSQEALQYVVERVGKRTGWLVE-IVNY--------------NVENQQYV---- 1854
Query: 137 KINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISH 174
A G + T+ + +Q + I
Sbjct: 1855 --------AA---GDLRALDTVTNVLNFIKLQKIDIIE 1881
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 31.8 bits (71), Expect = 0.21
Identities = 20/156 (12%), Positives = 50/156 (32%), Gaps = 12/156 (7%)
Query: 70 KISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLVENPENFPMFRKVDWILIPMLNPD 129
++ G + + ++ G I + ++++ E V +
Sbjct: 41 RLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK--EGLTVKQAYVNA---- 94
Query: 130 GYVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLD-GGI 188
++ + + L I R G+ + V G V + +++LD
Sbjct: 95 ---FNAPNLYTILSLIVRQTGYPIQVR--GAPALDILKALVDNLYVENHYLLVILDEFQS 149
Query: 189 HAREWIAPATVLYVLQQLVENPENFPMFRKVDWILI 224
A LY L ++ E + ++ ++L+
Sbjct: 150 MLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLV 185
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 28.2 bits (62), Expect = 2.7
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 1 MLNMIPEFGITKLSENKIDENVNTTRLNHVEKVHQQINSYLKHIA---RIYGHKVNVSTI 57
+ P L + + +E + R+ +++ I L+ R YG +S
Sbjct: 252 ATILKPVLTYENLEDEERNEVADIVRMEPGKRL-NLIRYILRRYVKALRDYG--WYISPE 308
Query: 58 GETIEGRPIQAVKISHGG 75
E +G+ +
Sbjct: 309 EERAKGKLNFKDTVLDAK 326
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE;
1.91A {Novosphingobium aromaticivorans dsm
12ORGANISM_TAXID}
Length = 172
Score = 27.4 bits (60), Expect = 3.4
Identities = 23/150 (15%), Positives = 39/150 (26%), Gaps = 18/150 (12%)
Query: 64 RPIQAVKISHGGVGNPIIVLDGGIHAREWIAPATVLYVLQQLVENPENFPMFRKVDWILI 123
P+Q V H G + + R + ++ P +
Sbjct: 12 PPVQRVVTGHDAHGRAVFKSEDVTPTRMIPSGDASFLLVWTTATVPADNNDETDGRQREA 71
Query: 124 PMLNPDGYVYSMTKINSYLKHIARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNP--- 180
+ G V + + H+ N G +EG + G
Sbjct: 72 GLTLDGGSVIRVVDMLP----GKESPMHRTNSIDYGIVLEG---EIELELDDGAKRTVRQ 124
Query: 181 --IIVLDGGIHAREWI----APATVLYVLQ 204
IIV G H W P + ++L
Sbjct: 125 GGIIVQRGTNHL--WRNTTDKPCRIAFILI 152
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 27.2 bits (61), Expect = 4.7
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 44 IARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAR 90
++ + E + + G I+ G H R
Sbjct: 146 TIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGR 192
Score = 27.2 bits (61), Expect = 4.7
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 145 IARIYGHKVNVSTIGETIEGRPIQAVKISHGGVGNPIIVLDGGIHAR 191
++ + E + + G I+ G H R
Sbjct: 146 TIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGR 192
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 26.4 bits (59), Expect = 9.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 84 DGGIHAREWIAPATVLYVLQQLVENPENF 112
G I + IA QQ++ PE +
Sbjct: 263 QGKIILNDRIADNM----FQQIIIRPEEY 287
Score = 26.4 bits (59), Expect = 9.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 185 DGGIHAREWIAPATVLYVLQQLVENPENF 213
G I + IA QQ++ PE +
Sbjct: 263 QGKIILNDRIADNM----FQQIIIRPEEY 287
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.423
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,909,652
Number of extensions: 242501
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 68
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)