RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13508
(621 letters)
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 63.2 bits (155), Expect = 9e-12
Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 42/215 (19%)
Query: 284 RAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYRKKWRAK 343
RA K+ + + L PG + D+ A PGG+S+YV+ + + +
Sbjct: 5 RAWFKLDEIQQSDK-------------LFKPGMTV--VDLGAAPGGWSQYVVTQIGGKGR 49
Query: 344 GIGFTLTGSHDFKLDDFFAGPSETFEPYYGVKG-NGDVYDPENILSLHEFVMKSTKGRGV 402
I D +P GV GD D + +++ V
Sbjct: 50 IIAC------DLL----------PMDPIVGVDFLQGDFRDELV----MKALLERVGDSKV 89
Query: 403 HFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFD--MFTPFSAGL 460
+M+D ++ G + + L + ++ P G FV KVF F
Sbjct: 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDE----Y 145
Query: 461 LYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 495
L + + +V + KP++SR + E YIV ++P
Sbjct: 146 LREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
Score = 56.3 bits (137), Expect = 2e-09
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 53 GDVYDPENILSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLF 112
GD D + +L E V V +M+D ++ G + + L +
Sbjct: 69 GDFRDELVMKALLERV----GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRD 124
Query: 113 IVRPEGHFVCKVFD--MFTPFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 170
++ P G FV KVF F L + + +V + KP++SR + E YIV ++P
Sbjct: 125 VLAPGGSFVVKVFQGEGFDE----YLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 63.3 bits (155), Expect = 1e-11
Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 35/216 (16%)
Query: 284 RAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYRKKWRAK 343
R+A K+ +++R +L PG + D A PG +S+ +K A
Sbjct: 5 RSAFKLLEVNERHQ-------------ILRPGLRV--LDCGAAPGAWSQVA--VQKVNAA 47
Query: 344 GIGFTLTGSHDFKLDDFFAGPSETFEPYYGVK--GNGDVYDPENILSLHEFVMKSTKGRG 401
G + +D P G DV DP + +++ GR
Sbjct: 48 GTDPSSPVGFVLGVD------LLHIFPLEGATFLCPADVTDPRT----SQRILEVLPGRR 97
Query: 402 VHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFD--MFTPFSAG 459
+++D + G ++ L L V+ I++P G F+CK +
Sbjct: 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRR---- 153
Query: 460 LLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 495
L L ++ V I KP SR +SE Y +
Sbjct: 154 LQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHG 189
Score = 54.8 bits (133), Expect = 9e-09
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 12/131 (9%)
Query: 42 LKNVLQCVKGNGDVYDPENILSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKR 101
L+ DV DP + E + GR +++D + G ++
Sbjct: 69 LEGATFLCPA--DVTDPRTSQRILEVL----PGRRADVILSDMAPNATGFRDLDHDRLIS 122
Query: 102 LYLCQFLVSLFIVRPEGHFVCKVFD--MFTPFSAGLLYLLYRSYKQVCIFKPNTSRPANS 159
L L V+ I++P G F+CK + L L ++ V I KP SR +S
Sbjct: 123 LCLTLLSVTPDILQPGGTFLCKTWAGSQSRR----LQRRLTEEFQNVRIIKPEASRKESS 178
Query: 160 ERYIVCKWKRP 170
E Y +
Sbjct: 179 EVYFLATQYHG 189
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 61.5 bits (149), Expect = 1e-10
Identities = 42/235 (17%), Positives = 74/235 (31%), Gaps = 40/235 (17%)
Query: 279 GPFLNRAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYRK 338
G ++R K+ +R + G ++ D+ G GG+ Y +K
Sbjct: 53 GVAVSRGTAKLRWFHERGY-------------VKLEGRVI---DLGCGRGGWCYYAAAQK 96
Query: 339 KWRAKGIGFTLTGSHDFKLDDFFAGPSETFEPYYGVKGNGDVYDPENILSLHEFVMKSTK 398
+ + GFTL G +P ++ ++ +H +
Sbjct: 97 EV-SGVKGFTL-------------GRDGHEKPMNVQSLGWNIITFKDKTDIHRL-----E 137
Query: 399 GRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSA 458
++ D G S E + L ++ +F KV + P
Sbjct: 138 PVKCDTLLCDIGESSSSSVTEGERTVRVLDTV----EKWLACGVDNFCVKVLAPYMPDVL 193
Query: 459 GLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDR 513
L LL R + I P SR + E Y V + T+ L +R+ R
Sbjct: 194 EKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGARSNVTFTVNQTSRLLMRRMRR 247
Score = 47.3 bits (112), Expect = 6e-06
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 52 NGDVYDPENILSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSL 111
++ ++ +H + ++ D G S E + L
Sbjct: 121 GWNIITFKDKTDIHRL-----EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTV----EK 171
Query: 112 FIVRPEGHFVCKVFDMFTPFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPD 171
++ +F KV + P L LL R + I P SR + E Y V +
Sbjct: 172 WLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGARSNV 230
Query: 172 CDTIRDFMFKLNKRLDR 188
T+ L +R+ R
Sbjct: 231 TFTVNQTSRLLMRRMRR 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 2e-10
Identities = 46/253 (18%), Positives = 79/253 (31%), Gaps = 89/253 (35%)
Query: 223 VFDELEGDQFFRARNRSNPFELIKNGPFLNRAAMKMANMDKRLNSMFT----QPVRENGN 278
V++ D F+ + +++ N P L F + +REN
Sbjct: 1645 VWNR--ADNHFKDTYGFSILDIVINNP-------------VNLTIHFGGEKGKRIREN-- 1687
Query: 279 GPFLNRAAMKMANM-DKRLNS--MFTQPVRENGSPLL--GPGELLY---------FADVC 324
+AM + D +L + +F + + E+ + LL
Sbjct: 1688 -----YSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQFTQPALTL--- 1738
Query: 325 AGPGGFSEYVLYRKKWRAKGIGFTLTGSHDFKLDDFFAGPS--ETFEPYYG--VKGNGDV 380
E + ++KG+ D FAG S E Y DV
Sbjct: 1739 ------MEKAAFED-LKSKGL---------IPADATFAGHSLGE-----YAALA-SLADV 1776
Query: 381 YDPENILSL--------HEFVMKSTKGRGVHFMMADG------GFSVEGQENIQEILSKR 426
E+++ + V + GR + M+A FS E + + E + KR
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 427 LYLCQFLVSLFIV 439
+LV IV
Sbjct: 1837 ---TGWLVE--IV 1844
Score = 43.1 bits (101), Expect = 3e-04
Identities = 93/578 (16%), Positives = 158/578 (27%), Gaps = 227/578 (39%)
Query: 5 TRSHLPA--LSEDDMDSWIVEGDKKLSIDNETKFCSPNLLKNVLQCV-----KGNGDVYD 57
T S A L ++ + + E + + D+E L+ L V +D
Sbjct: 24 TASFFIASQL-QEQFNKILPEPTEGFAADDEPT-TPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 58 PENILSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRP- 116
L L EF +G +H + A + + + + +K L + RP
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAA----KLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 117 -------------EGHFVCKVFDMF-------TPFSAGL--LYLLYRSYKQVCI------ 148
EG+ ++ +F F L LY Y I
Sbjct: 138 DKKSNSALFRAVGEGNA--QLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVGDLIKFSAET 194
Query: 149 FKPNTSRPANSERYI-----VCKW-----KRPDCDTIRDFM------FKLNK--RLDRY- 189
++E+ + +W PD +D++ L +L Y
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPD----KDYLLSIPISCPLIGVIQLAHYV 250
Query: 190 ------------------GSTSK-RDIVSCVPLDIMKSDANFFDYLVTSNNTVF------ 224
G+T + +V+ V + S +FF + + +F
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 225 ---------------DELEGDQ-------------------FFRARNRSNPFE------L 244
D LE ++ + N P L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 245 IKNGP--F-----------LNRAAMKM---ANMDKRLNSMFTQ----------PVRENGN 278
+ NG LN K + +D+ F++ PV
Sbjct: 371 V-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPV----A 424
Query: 279 GPF----LNRAAMKMANMDKRLNSMFTQ-----PVR--ENGSPLLGPGELLYFADVCAGP 327
PF L A+ + + N F PV +GS D+
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS------------DLRVLS 472
Query: 328 GGFSEYV---LYRK--KWRAKGIGFTLTGSH--DFKLDDFFAGPSETFEPYYGVKGNGDV 380
G SE + + R KW F T H DF GP G G G +
Sbjct: 473 GSISERIVDCIIRLPVKW-ETTTQFKAT--HILDF-------GPG-------GASGLGVL 515
Query: 381 YDPENILSLHEFVMKSTKGRGVHFMMADGGFSVEGQEN 418
++ G GV ++A +++ +
Sbjct: 516 ------------THRNKDGTGVRVIVAG---TLDINPD 538
Score = 42.3 bits (99), Expect = 5e-04
Identities = 85/530 (16%), Positives = 153/530 (28%), Gaps = 203/530 (38%)
Query: 204 DIMKSDANFF--DYLVTSN-NTVFDELEGDQ-------------FFRARNRSN-PFELIK 246
++ F YL ++ + + +L + + AR + PF+
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 247 NGPFLNRAAMKMANMDKRLNSMFT-QPVRENGN-------------------GPFLNRAA 286
N A +L ++F Q GN G + +A
Sbjct: 142 NSALFRAVGEGNA----QLVAIFGGQ-----GNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 287 MKMANM---DKRLNSMFTQ-----------------------PVRENGS-PLLGPGELLY 319
++ + +FTQ P+ S PL+G +L +
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----SCPLIGVIQLAH 248
Query: 320 FADVC--AG--PGGFSEYVLYRKKW---RAKGI--GFTLTGSHDFKLDDFFAGPSET--- 367
+ G PG Y+ K ++G+ + + + + FF +
Sbjct: 249 YVVTAKLLGFTPGELRSYL----KGATGHSQGLVTAVAIAETDSW--ESFFVSVRKAITV 302
Query: 368 -FEPYYGVKGNGDVYDPENILSLHEFVMKSTK--GRGV-HFMMADGGFSVEG--QENIQE 421
F + GV+ + Y P SL +++ + GV M S+ QE +Q+
Sbjct: 303 LF--FIGVRCY-EAY-PN--TSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQVQD 351
Query: 422 ILSKRLYLCQFL-------VSLFIVRPEG--HFVCKVFDMFT--PFSAGLLYLLYRSYKQ 470
++K L +SL G + V + P S LY L + ++
Sbjct: 352 YVNK---TNSHLPAGKQVEISLVN----GAKNLVV------SGPPQS---LYGLNLTLRK 395
Query: 471 VCI-FKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDRYGSTSK-------RDI 522
+ SR SER + R+ +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSN--------------------RFLPVASPFHSHLLVPA 435
Query: 523 VSCVPLDIMKSDANF---------F------DYLVTSNNVINRIAGLGKHAIYRYREDSN 567
+ D++K++ +F + D V S ++ RI I R
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV----DCIIRLPVK-- 489
Query: 568 RWVSETSLG----IQLSPGTLV-YGETVEEFK-GQGASQVKLKTFHIIDA 611
W + T + PG G K G G +I A
Sbjct: 490 -WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV--------RVIVA 530
Score = 33.1 bits (75), Expect = 0.39
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 51/157 (32%)
Query: 1 MAEATRSHLPALSEDDMD--SWIVEGDK-KLSIDNETKFCSPNLL---KNVLQCVKGNG- 53
+ + E + S+ +K L + T+F P L K + +K G
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 54 ----------------------DVYDPENILSL--------HEFVMKSSKGRGVHFMMAD 83
DV E+++ + V + GR + M+A
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 84 G------GFSVEGQENIQEILSKRLYLCQFLVSLFIV 114
FS E + + E + KR +LV IV
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKR---TGWLVE--IV 1844
Score = 31.6 bits (71), Expect = 0.90
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 53 GDVYDPENI-LSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSL 111
D + + S+ + V+ + +HF GG +G+ I+E + +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHF----GG--EKGKR-IRE---------NYSAMI 1692
Query: 112 FIVRPEGHFVC-KVFDMFTPFSAGLLY-----LLYR-SYKQVCIF 149
F +G K+F S + LL + Q +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 58.7 bits (143), Expect = 4e-10
Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 42/216 (19%)
Query: 284 RAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYRKKWRAK 343
RAA K+ + R ++ G+ + ++ + PGG+++ + K
Sbjct: 8 RAAFKLEFLLDRYR-------------VVRKGDAV--IEIGSSPGGWTQVL---NSLARK 49
Query: 344 GIGFTLTGSHDFKLDDFFAGPSETFEPYYGVKG-NGDVYDPENILSLHEFVMKSTKGRGV 402
I D + E GV+ D++ + ++ V
Sbjct: 50 IISI------DLQ----------EMEEIAGVRFIRCDIFKETIFDDIDRA-LREEGIEKV 92
Query: 403 HFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFD--MFTPFSAGL 460
+++D V G + +S ++ +++ +R G+ + K F M
Sbjct: 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTND----F 148
Query: 461 LYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPD 496
+ + +++ I KP SR ++SE YI+ + +
Sbjct: 149 IAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKAE 184
Score = 55.6 bits (135), Expect = 4e-09
Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 53 GDVYDPENILSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLF 112
D++ + ++ V +++D V G + +S ++ +++
Sbjct: 69 CDIFKETIFDDIDRA-LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVR 127
Query: 113 IVRPEGHFVCKVFD--MFTPFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 170
+R G+ + K F M + + +++ I KP SR ++SE YI+ +
Sbjct: 128 YLRNGGNVLLKQFQGDMTND----FIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKA 183
Query: 171 D 171
+
Sbjct: 184 E 184
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 58.4 bits (142), Expect = 6e-10
Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 36/221 (16%)
Query: 284 RAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYR-KKWRA 342
RAA K+ +D + L +++ D+ PG + + +L R K ++
Sbjct: 5 RAAYKLIELDNKYL-------------FLKKNKII--LDIGCYPGSWCQVILERTKNYKN 49
Query: 343 KGIG------FTLTGSHDFKLDDFFAGPSETFEPYYGVKGNGDVYDPENILSLHEFVMKS 396
K IG + + + + + N + D N S+ + +
Sbjct: 50 KIIGIDKKIMDPIPNVYFIQGE--I------GKDNMNNIKNINYIDNMNNNSVDYKLKEI 101
Query: 397 TKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFD--MFT 454
+ + + +++D G + + S L L + G ++ K++
Sbjct: 102 LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTN 161
Query: 455 PFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 495
L L ++ V KP SR + E Y+VCK
Sbjct: 162 N----LKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLG 198
Score = 50.3 bits (121), Expect = 3e-07
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 57 DPENILSLHEFVMKSSKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRP 116
D N S+ + + + + + +++D G + + S L L +
Sbjct: 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI 146
Query: 117 EGHFVCKVFD--MFTPFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 170
G ++ K++ L L ++ V KP SR + E Y+VCK
Sbjct: 147 GGTYIVKMYLGSQTNN----LKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLG 198
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 57.2 bits (138), Expect = 4e-09
Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 40/235 (17%)
Query: 279 GPFLNRAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYRK 338
G ++R A K+ + +R L G +L D+ G GG+S Y +K
Sbjct: 60 GISVSRGAAKIRWLHERGY-------------LRITGRVL---DLGCGRGGWSYYAAAQK 103
Query: 339 KWRAKGIGFTLTGSHDFKLDDFFAGPSETFEPYYGVKGNGDVYDPENILSLHEFVMKSTK 398
+ G+TL G +P + ++ ++ ++
Sbjct: 104 E-VMSVKGYTL-------------GIEGHEKPIHMQTLGWNIVKFKDKSNVFTM-----P 144
Query: 399 GRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSA 458
++ D G S ++ + + + + + +F KV + P
Sbjct: 145 TEPSDTLLCDIGESSSNPLVERD---RTMKVLE-NFERWKHVNTENFCVKVLAPYHPDVI 200
Query: 459 GLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDR 513
L L + + P SR + E Y + + + L +R+ R
Sbjct: 201 EKLERLQLRFGGGIVRVP-FSRNSTHEMYYISGARNNITHMVNTTSRSLLRRMTR 254
Score = 45.7 bits (108), Expect = 2e-05
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 102 LYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGLLYLLYRSYKQVCIFKPNTSRPANSER 161
+ + + + +F KV + P L L + + P SR + E
Sbjct: 170 MKVLE-NFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEM 227
Query: 162 YIVCKWKRPDCDTIRDFMFKLNKRLDR 188
Y + + + L +R+ R
Sbjct: 228 YYISGARNNITHMVNTTSRSLLRRMTR 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 1e-08
Identities = 81/575 (14%), Positives = 166/575 (28%), Gaps = 175/575 (30%)
Query: 32 NETKFCSPNLLKNVLQCVKGNGDVYD----PENILSLHEF---VMKSSKGRGVHFMMADG 84
E ++ ++L N D D P++ILS E +M G +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--W 69
Query: 85 GFSVEGQENIQEILSKRL---YLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGLLYLLYR 141
+ +E +Q+ + + L Y +FL+S P +Y+ R
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQ-----------PSMMTRMYIEQR 116
Query: 142 S--YKQVCIFKP-NTSRPANSERYIVCKWKRPDCDTIRDFMFKL--NKRLDRYG--STSK 194
Y +F N SR + Y +R + +L K + G + K
Sbjct: 117 DRLYNDNQVFAKYNVSRL---QPY----------LKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 195 RDIVSCVPLDIMKSDANFFDYLVTSNNTVFDELEGDQFFRARNRSNPFELIKNGPFLNRA 254
+ V LD+ S + + +F + +N ++P +++
Sbjct: 164 ----TWVALDVCLS----YKVQCKMDFKIF-------WLNLKNCNSPETVLEM------- 201
Query: 255 AMKMANMDKRLNSMFTQPVRENGNGPFLNRAAMKMANMDKRLNSMFTQPVRENGSPLLGP 314
+ + +++ +T + N +++ ++ L + EN
Sbjct: 202 ---LQKLLYQIDPNWTSRSDHSSNIK------LRIHSIQAELRRLLKSKPYENC------ 246
Query: 315 GELLYFADVCAGPGGFSEYVLYRKKWRA-------------KGIGFTLTGSH--DFKLDD 359
LL +V K W A K + L+ + LD
Sbjct: 247 --LLVLLNVQ-----------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 360 FFAG--PSET---FEPYYGVKGNGDVYD-PENILSLHEFVMKSTKGRGVHFMMADGGFSV 413
P E Y + D P +L+ + + S + DG +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCR----PQDLPREVLTTNPRRL-SIIAE----SIRDG---L 341
Query: 414 EGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGLLYLLYRSYKQVCI 473
+N + + +L ++ + ++ P + + ++ +
Sbjct: 342 ATWDNWKHVNCDKL---TTIIESSL------------NVLEP------AEYRKMFDRLSV 380
Query: 474 FKPNTSRPANS-ERYIVCKWKRPDCDTIRDFMFKLNKR--LDRYGSTSKRDIVSCVPLDI 530
F P+ P W + + KL+K +++ S I I
Sbjct: 381 FPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSI 431
Query: 531 MKSDANFFDYLVTSNNVINRIAGLGKHA--IYRYR 563
+ + V N H + Y
Sbjct: 432 ------YLELKVKLENEYA------LHRSIVDHYN 454
Score = 41.4 bits (96), Expect = 0.001
Identities = 45/369 (12%), Positives = 100/369 (27%), Gaps = 115/369 (31%)
Query: 20 WIVEGDKKLSIDNETKFCSPNLLKNVLQCVKGNGDVYDPE---------NIL------SL 64
I ++L + C LL VL +V + + IL +
Sbjct: 229 SIQAELRRLLKSKPYENC---LL--VLL------NVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 65 HEFVMKSSKGRGVHFMMAD--GGFSVEGQENIQEILSKRLYL---------CQ---FLVS 110
+F+ S H + + + ++ +L K L +S
Sbjct: 278 TDFL---SAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 111 LF-------IVRPEG--HFVCKVFDMFTPFSAGLL--YLLYRSYKQVCIFKPNTSRPANS 159
+ + + H C S +L + + ++ +F P+ P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 160 -ERYIVCKWKRPDCDTIRDFMFKLNKR--LDRYGSTSKRDIVSCVPLDIMKSDANFFDYL 216
W + + KL+K +++ S I I + +
Sbjct: 392 LSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSI------YLELK 436
Query: 217 VTSNNTVFDEL-----EGDQFFRARNRSNPFELIKNGPFLNRAA--MKMANMDKRLNSMF 269
V N L + + + + + F + +K +R+ ++F
Sbjct: 437 VKLENEY--ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLF 493
Query: 270 TQPVRENGNGPFLNRAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGG 329
FL+ ++ Q +R + + G +L +
Sbjct: 494 RM--------VFLDFRFLE-------------QKIRHDSTAWNASGSIL---NT------ 523
Query: 330 FSEYVLYRK 338
+ Y+
Sbjct: 524 LQQLKFYKP 532
>2x0q_A ALCC, alcaligin biosynthesis protein; adenylation, siderophores,
iron ACQU biosynthetic protein; HET: ATP; 1.96A
{Bordetella bronchiseptica} PDB: 2x0o_A* 2x0p_A*
Length = 618
Score = 34.6 bits (79), Expect = 0.11
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 238 RSNPFELIKNGPFLNRAAMKMANMDKRLNSMFTQPVRENGNGPFLNRAAMKMANMDKRLN 297
R + P +N + + D L + + +RE + F N + D
Sbjct: 312 RGLSPYYMAGTPAINEYIHDLISADPWLRANGFRILREVASMGFRNYYYEAAIDTDTPYK 371
Query: 298 SMFTQPVRENGSPLLGPGELL 318
MF+ REN L+ PG+ L
Sbjct: 372 KMFSALWRENPLTLIAPGQNL 392
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
alpha member 1; potassium channel, membrane protein,
transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Length = 726
Score = 29.7 bits (65), Expect = 3.6
Identities = 48/494 (9%), Positives = 125/494 (25%), Gaps = 44/494 (8%)
Query: 16 DMDSWIVEGDKKLSIDNETKFCSPNLLKNVLQCVKGNGDVYDPENILSLHEFVMKSSKGR 75
I EG I ++ K + + C + D+ DP+ I ++ +
Sbjct: 245 GNHLKIQEGTLGFFIASDAK----EVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQPS 300
Query: 76 GVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGL 135
+ + N L + L I + +
Sbjct: 301 TLSPKKKQRNGGMRNSPNTSPKLMRH-------DPLLIPGNDQIDNMDSNVKKYDSTGMF 353
Query: 136 LYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDRYGSTSKR 195
+ + ++V + + + S +VC + I + R + +
Sbjct: 354 HWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELK 413
Query: 196 DIVSCVPLDIMKSDANFFD-----YLVTSNNTVFDELEGDQFFRARNRSNPFELIKNGPF 250
IV ++ +K + ++ +L +I +
Sbjct: 414 HIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMC-----VILSANQ 468
Query: 251 LNRAAMKMANMDKRLNSMFTQPVRENGNGPFLNRAAMKMANMDKRLNSMFTQPVRENGSP 310
N + + + L S+ + ++ + + L + +S PV
Sbjct: 469 NNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQ 528
Query: 311 LLGPGELLYFADVCAGPGGFSEYVLYRKKWRAKGIGFTLTGSHDFKLDDFFAGPSETFEP 370
+ +++ + L FA +
Sbjct: 529 PSITTGVNIPIITELVNDTNVQFLDQDDDDDPDT---------ELYLTQPFACGTAFAVS 579
Query: 371 YYGVKGNGDVYDPENILSLHEFVMKSTKGRGVHFMMADGGFSVEGQENIQEILSKRLYLC 430
+ ++ + + V + + G + + L+ R
Sbjct: 580 VLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALR--GGYSTPQTLANRDRCR 637
Query: 431 QFLVSLFIVRPEGHFVCKVF-DMFTPF--SAGLLYL-LYRSYKQVCIFKPNTSRPANSER 486
++L + D+F + +L +YR ++ ++R
Sbjct: 638 VAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYR-----LRDAHLSTPSQCTKR 692
Query: 487 YIVCKWKRPDCDTI 500
Y++ P +
Sbjct: 693 YVIT---NPPYEFE 703
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 29.1 bits (66), Expect = 4.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 266 NSMFTQPVRENGNGPFLNRAAMK 288
+ T+ + +NG G FL R +
Sbjct: 202 FDLITKSLYDNGEGFFLTREHID 224
>3k3w_B Penicillin G acylase; hydrolase; 3.31A {Alcaligenes faecalis} PDB:
3ml0_B
Length = 551
Score = 29.2 bits (65), Expect = 5.4
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 214 DYLVTSNNTVFDE--LEGDQFFRARNRSN-PFELIKNGPFLNRAAMKMANMDKRLNSMFT 270
YLV NN + ++ +R N + + + N + +
Sbjct: 235 GYLVNWNNKPAPDKTNTDTYYWTYGDRMNELVSQYQQKDLFSVQEIWEFNQKASYSDVNW 294
Query: 271 QPVRENGNGPFLNRAA 286
+ R P L + A
Sbjct: 295 RYFR-----PHLEKLA 305
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 28.7 bits (65), Expect = 5.7
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 273 VRENGNGPFLNRAAMK 288
+ EN G L M
Sbjct: 197 IEENAEGYLLTGGMML 212
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 28.4 bits (64), Expect = 6.7
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 270 TQPVRENGNGPFLNRAAMK 288
T E P + A
Sbjct: 202 TASRSEFRATPAFDGEAAS 220
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 28.0 bits (63), Expect = 8.2
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 270 TQPVRENGNGPFLNRAAMKMA 290
T + + P +R ++
Sbjct: 197 TVSMTNFVDTPLWHRPNAILS 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,620,908
Number of extensions: 586540
Number of successful extensions: 1109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1081
Number of HSP's successfully gapped: 27
Length of query: 621
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 522
Effective length of database: 3,937,614
Effective search space: 2055434508
Effective search space used: 2055434508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)