RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13508
(621 letters)
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 92.6 bits (229), Expect = 2e-22
Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 36/212 (16%)
Query: 284 RAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSEYVLYRKKWRAK 343
RA K+ + + L PG + D+ A PGG+S+YV+ + + +
Sbjct: 5 RAWFKLDEIQQSDK-------------LFKPG--MTVVDLGAAPGGWSQYVVTQIGGKGR 49
Query: 344 GIGFTLTGSHDFKLDDFFAGPSETFEPYYGVKGNGDVYDPENILSLHEFVMKSTKGRGVH 403
I L DF G +++ V
Sbjct: 50 IIACDLLPMDPIVGVDFLQGDFRDELVMK-------------------ALLERVGDSKVQ 90
Query: 404 FMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGLLYL 463
+M+D ++ G + + L + ++ P G FV KVF L
Sbjct: 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ--GEGFDEYLRE 148
Query: 464 LYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 495
+ + +V + KP++SR + E YIV ++P
Sbjct: 149 IRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
Score = 73.7 bits (180), Expect = 8e-16
Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 4/156 (2%)
Query: 17 MDSWIVEGDKKLSIDNETKFCSPN--LLKNVLQCVKGNGDVYDPENILSLHEFVMKSSKG 74
+D G + + + + G + + + +++
Sbjct: 27 VDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGD 86
Query: 75 RGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAG 134
V +M+D ++ G + + L + ++ P G FV KVF
Sbjct: 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ--GEGFDE 144
Query: 135 LLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRP 170
L + + +V + KP++SR + E YIV ++P
Sbjct: 145 YLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 59.9 bits (145), Expect = 1e-10
Identities = 35/251 (13%), Positives = 70/251 (27%), Gaps = 44/251 (17%)
Query: 273 VRENGNGPFLNRAAMKMANMDKRLNSMFTQPVRENGSPLLGPGELLYFADVCAGPGGFSE 332
R + ++R + K+ +R V G D+ G GG+S
Sbjct: 39 KRGETDHHAVSRGSAKLRWFVERNL------VTPEG----------KVVDLGCGRGGWSY 82
Query: 333 YVLYRKKWRAKGIGFTLTGSHDFKLDDFFAGPSETFEPYYGVKGNGDVYDPENILSLHEF 392
Y K + G T G EP ++ ++ + +
Sbjct: 83 YCGGLKN-VREVKGLTK-------------GGPGHEEPIPMSTYGWNLVRLQSGVDVFFI 128
Query: 393 VMKSTKGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDM 452
++ D G S ++ + L + + + F KV +
Sbjct: 129 -----PPERCDTLLCDIGESSPNPT-VEAGRT--LRVLNLVENWL--SNNTQFCVKVLNP 178
Query: 453 FTPFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLD 512
+ + L R + + P SR + E Y V + + ++
Sbjct: 179 YMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVS---NASGNIVSSVNMISRMLIN 234
Query: 513 RYGSTSKRDIV 523
R+ K+
Sbjct: 235 RFTMRHKKATY 245
Score = 42.6 bits (100), Expect = 6e-05
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 9/126 (7%)
Query: 73 KGRGVHFMMADGGFSVEGQENIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFS 132
++ D G S ++ + L + + + F KV + +
Sbjct: 129 PPERCDTLLCDIGESSPNPT-VEAGRT--LRVLNLVENWL--SNNTQFCVKVLNPYMSSV 183
Query: 133 AGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDRYGST 192
+ L R + + P SR + E Y V + + ++R+
Sbjct: 184 IEKMEALQRKHGGALVRNP-LSRNSTHEMYWVS---NASGNIVSSVNMISRMLINRFTMR 239
Query: 193 SKRDIV 198
K+
Sbjct: 240 HKKATY 245
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 31.6 bits (71), Expect = 0.18
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 93 NIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGLLYLLYRSYKQVCIFKPN 152
N++EI S + L Q L + V F P L YL Y + +
Sbjct: 60 NLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTL-YLTYCANHPSAVNVLT 118
Query: 153 TSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDRY 189
E P + + K RLD+Y
Sbjct: 119 EHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKY 155
Score = 31.6 bits (71), Expect = 0.18
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 418 NIQEILSKRLYLCQFLVSLFIVRPEGHFVCKVFDMFTPFSAGLLYLLYRSYKQVCIFKPN 477
N++EI S + L Q L + V F P L YL Y + +
Sbjct: 60 NLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTL-YLTYCANHPSAVNVLT 118
Query: 478 TSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDRY 514
E P + + K RLD+Y
Sbjct: 119 EHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKY 155
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 28.1 bits (62), Expect = 3.8
Identities = 17/149 (11%), Positives = 37/149 (24%), Gaps = 6/149 (4%)
Query: 47 QCVKGNGDVYDPENILSLHEFVMKSSKGR-----GVHFMMADGGFSVEGQENIQEILSKR 101
V GNG V ++++ E V R H + QE + K+
Sbjct: 65 ISVLGNGMVIHVKSLMEEIESVGGKLLDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQ 124
Query: 102 LYLCQFLVSLFIVRPEGHFVCKVFDMFTPFS-AGLLYLLYRSYKQVCIFKPNTSRPANSE 160
+ + + ++ + + + L + +
Sbjct: 125 IGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYNITEYDKEKELNL 184
Query: 161 RYIVCKWKRPDCDTIRDFMFKLNKRLDRY 189
Y R + FM + +
Sbjct: 185 FYNYHIKLRDRIVDVISFMNTNLENNKKV 213
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 26.6 bits (57), Expect = 8.2
Identities = 25/190 (13%), Positives = 44/190 (23%), Gaps = 9/190 (4%)
Query: 129 TPFSAGLLYLLYRSYKQVCIFKPNTSRPANSERYIVCKWKRPDCDTIRDFMFKLNKRLDR 188
T S LL + + +KP S + + +
Sbjct: 16 TVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYT 75
Query: 189 YGSTSKRDIVSCVPLDIMKSDANFFDYLVTSNNTVFDELEGDQ-----FFRARNRSNPFE 243
+ + I+S ++S + +EG ++
Sbjct: 76 FAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVT 135
Query: 244 LIKNGPFLNRAAMKMANMDKRLNSMFTQPVRENGNGPFLNRAAMKMANMDKRLNSMFTQP 303
+ L L + Q G N + KR T
Sbjct: 136 QEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVAND----VTPPGKRHAEYMTTL 191
Query: 304 VRENGSPLLG 313
R +PLLG
Sbjct: 192 TRMIPAPLLG 201
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,385,635
Number of extensions: 115808
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 12
Length of query: 621
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 530
Effective length of database: 1,158,166
Effective search space: 613827980
Effective search space used: 613827980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)