BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13511
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C67|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Glucose
 pdb|3C67|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Glucose
 pdb|3C68|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Mannose
 pdb|3C68|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Mannose
 pdb|3C69|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Galactose
 pdb|3C69|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Galactose
          Length = 761

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 9   SGIIKSFLETSGPLNDTY----LPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
           + ++++ + ++ PL+  +    L   E   G+ + D T+A     +P Y  +I  T DG 
Sbjct: 119 TSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAG---EYPDYQRKISATRDGL 175

Query: 65  KVPFHKM 71
           KV F K+
Sbjct: 176 KVTFGKV 182


>pdb|3D3I|A Chain A, Crystal Structural Of Escherichia Coli K12 Ygjk, A
           Glucosidase Belonging To Glycoside Hydrolase Family 63
 pdb|3D3I|B Chain B, Crystal Structural Of Escherichia Coli K12 Ygjk, A
           Glucosidase Belonging To Glycoside Hydrolase Family 63
          Length = 761

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 9   SGIIKSFLETSGPLNDTY----LPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
           + ++++ + ++ PL+  +    L   E   G+ + D T+A     +P Y  +I  T DG 
Sbjct: 119 TSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAG---EYPDYQRKISATRDGL 175

Query: 65  KVPFHKM 71
           KV F K+
Sbjct: 176 KVTFGKV 182


>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
          Length = 357

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 46 VRENFPQYVEEIEGTADGAK 65
          + E +P+Y EEI G A GA+
Sbjct: 58 IEERWPKYYEEIRGIAKGAE 77


>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum
 pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
          A:isopenicillin N Acyltransferase From Penicillium
          Chrysogenum In Complex 6-Aminopenicillanic Acid
          Length = 357

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 46 VRENFPQYVEEIEGTADGAK 65
          + E +P+Y EEI G A GA+
Sbjct: 58 IEERWPKYYEEIRGIAKGAE 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,574,026
Number of Sequences: 62578
Number of extensions: 93422
Number of successful extensions: 209
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)