BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13511
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q75DC5|ERB1_ASHGO Ribosome biogenesis protein ERB1 OS=Ashbya gossypii (strain ATCC
           10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERB1
           PE=3 SV=2
          Length = 827

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 23  NDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTAD 62
           +D  + ++E   GR VY AT+  ++ N   ++E +E   D
Sbjct: 483 DDGTVRVWEILTGREVYKATIVDIKNNQDDHIETVEWNPD 522


>sp|P46937|YAP1_HUMAN Yorkie homolog OS=Homo sapiens GN=YAP1 PE=1 SV=2
          Length = 504

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 31  ETDAGRRVYDATLASVRENFPQYVEEIEGT 60
           E D G  +  +TL S +  FP Y+E I GT
Sbjct: 422 EMDTGDTINQSTLPSQQNRFPDYLEAIPGT 451


>sp|Q9ZMW6|CYSM_HELPJ Cysteine synthase OS=Helicobacter pylori (strain J99) GN=cysM PE=3
           SV=1
          Length = 305

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 2   TSRGRTFSGIIKSFLETSGPLNDTYLPL-YETDAGRRVYDATLASVRENFPQYVEE---- 56
           TS G   SG IK   E +  + D+YLPL +E       Y  TLA      P+ V+E    
Sbjct: 119 TSEG--ISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLA------PEIVQELGTN 170

Query: 57  ----IEGTADGAKVPFHKMSRKLKERPTELRSLST 87
               + G   G    F  M++ LKER   +R +  
Sbjct: 171 LTSFVAGIGSGGT--FAGMAKYLKERIPNIRLIGV 203


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,221,519
Number of Sequences: 539616
Number of extensions: 1155275
Number of successful extensions: 2529
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2524
Number of HSP's gapped (non-prelim): 7
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)