Query psy13511
Match_columns 88
No_of_seqs 101 out of 194
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:16:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1d_A Acyl-coenzyme A\:6-amin 99.7 9E-18 3.1E-22 124.6 6.6 75 2-77 11-89 (357)
2 1dul_A Signal recognition part 80.8 0.51 1.7E-05 28.0 0.9 28 50-77 29-58 (69)
3 2x1d_A Acyl-coenzyme A\:6-amin 74.4 1.9 6.4E-05 31.2 2.5 13 1-13 14-26 (357)
4 1qb2_A SRP54, human signal rec 73.4 2.2 7.7E-05 27.1 2.4 42 36-77 44-98 (109)
5 1hq1_A Signal recognition part 66.8 1.5 5.1E-05 27.8 0.5 31 47-77 60-92 (105)
6 2gvs_A Chemosensory protein CS 64.3 16 0.00056 23.1 5.1 50 5-62 42-91 (109)
7 2jqe_A SRP54, signal recogniti 60.3 2.3 8E-05 27.5 0.5 40 38-77 54-101 (119)
8 1k19_A Chemosensory protein CS 59.2 17 0.00057 23.2 4.4 51 4-62 39-89 (112)
9 1mfq_C SRP54, signal recogniti 58.3 6.5 0.00022 25.8 2.4 42 36-77 57-111 (129)
10 2pq7_A Predicted HD superfamil 57.7 8.6 0.00029 26.0 3.1 34 27-60 187-220 (220)
11 2qgs_A Protein Se1688; alpha-h 57.4 10 0.00034 26.0 3.4 38 26-63 181-218 (225)
12 3gw7_A Uncharacterized protein 56.8 17 0.00058 25.5 4.6 43 28-70 183-225 (239)
13 1e0g_A Membrane-bound lytic mu 53.9 7.3 0.00025 19.7 1.8 26 57-83 13-38 (48)
14 3cqn_A Violaxanthin DE-epoxida 52.7 3.2 0.00011 28.8 0.2 37 49-85 144-180 (185)
15 3dto_A BH2835 protein; all alp 45.8 18 0.00061 25.1 3.2 34 28-61 182-215 (223)
16 3djb_A Hydrolase, HD family; a 44.1 23 0.00077 24.5 3.5 33 29-61 183-215 (223)
17 2da7_A Zinc finger homeobox pr 38.3 10 0.00036 22.5 0.9 32 48-80 27-58 (71)
18 3kxy_T EXSE; type-three secret 37.6 27 0.00091 19.9 2.5 32 39-70 29-60 (66)
19 2qkw_A Avirulence protein; thr 33.8 16 0.00054 24.8 1.3 26 59-84 42-67 (164)
20 3r46_A Coiled coil helix L24D; 31.8 50 0.0017 16.5 2.7 16 51-66 19-34 (35)
21 2lig_A Aspartate receptor; che 31.5 82 0.0028 18.5 5.4 49 9-58 66-114 (164)
22 3k6c_A Uncharacterized protein 30.2 54 0.0018 20.3 3.3 25 36-60 61-85 (95)
23 2pjq_A Uncharacterized protein 28.8 47 0.0016 22.7 3.1 34 28-61 188-221 (231)
24 3sjr_A Uncharacterized protein 28.6 83 0.0028 21.5 4.2 59 7-68 92-150 (175)
25 1zpy_A Hypothetical protein NE 26.8 67 0.0023 19.9 3.3 25 36-60 61-85 (95)
26 2x49_A INVA, invasion protein 25.8 42 0.0015 24.8 2.6 23 36-58 147-169 (333)
27 2k9q_A Uncharacterized protein 25.5 63 0.0021 17.4 2.8 29 50-79 41-69 (77)
28 4a5p_A Protein MXIA, protein V 25.4 70 0.0024 24.2 3.8 31 36-71 197-227 (383)
29 4i16_A Caspase recruitment dom 23.5 79 0.0027 19.4 3.1 26 34-59 66-91 (93)
30 2r1j_L Repressor protein C2; p 21.8 59 0.002 16.7 2.1 23 49-72 43-65 (68)
31 3kat_A Nacht, LRR and PYD doma 21.7 61 0.0021 20.2 2.4 25 36-60 78-102 (107)
32 4gt9_A TS, tsase, thymidylate 21.6 1.4E+02 0.0048 20.6 4.5 35 32-66 192-227 (232)
33 3mix_A Flagellar biosynthesis 21.6 62 0.0021 24.4 2.8 23 36-58 192-214 (382)
34 3s8q_A R-M controller protein; 21.2 58 0.002 17.7 2.0 36 40-76 38-75 (82)
35 2vy1_A Protein leafy, leafy; D 21.0 55 0.0019 22.4 2.2 41 45-85 110-155 (194)
36 2b5a_A C.BCLI; helix-turn-heli 20.1 65 0.0022 17.1 2.0 25 50-75 49-73 (77)
No 1
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=99.71 E-value=9e-18 Score=124.65 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=58.2
Q ss_pred chHHHhHHHHHHHHH----hhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhcccCCCHHHHHHhhcC
Q psy13511 2 TSRGRTFSGIIKSFL----ETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLKE 77 (88)
Q Consensus 2 yeiG~~~g~~I~~~i----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAdGAgv~fedI~lin~~ 77 (88)
||+|.++|++.++.| ..+..+++.+.++ .|++.++.++++++.+++++|+|+|||+|||||+|+|+++|+++|+-
T Consensus 11 ye~G~~~G~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~eEi~GiA~g~~~~~~~i~~ln~~ 89 (357)
T 2x1d_A 11 FEIGYEHGSAAKAVIARSIDFAVDLIRGKTKK-TDEELKQVLSQLGRVIEERWPKYYEEIRGIAKGAERDVSEIVMLNTR 89 (357)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhhChhHHHHHHHHHhhcCCCHHHHHhhhcH
Confidence 566666666555554 4455554444443 35566999999999999999999999999999999999999999984
No 2
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=80.77 E-value=0.51 Score=27.99 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=21.3
Q ss_pred CchHH--HHHHHhhcccCCCHHHHHHhhcC
Q psy13511 50 FPQYV--EEIEGTADGAKVPFHKMSRKLKE 77 (88)
Q Consensus 50 ~P~y~--eEmrGIAdGAgv~fedI~lin~~ 77 (88)
.|+++ .=.+=||.|||++..||--+-+|
T Consensus 29 nP~ii~~SR~~RIA~GSG~~v~eVn~Llkq 58 (69)
T 1dul_A 29 KPEIIKGSRKRRIAAGSGMQVQDVNRLLKQ 58 (69)
T ss_dssp CGGGCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CccccCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 46665 34577999999999999766554
No 3
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=74.36 E-value=1.9 Score=31.22 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=10.0
Q ss_pred CchHHHhHHHHHH
Q psy13511 1 MTSRGRTFSGIIK 13 (88)
Q Consensus 1 gyeiG~~~g~~I~ 13 (88)
|+++|+.++++|+
T Consensus 14 G~~~G~~~~~~i~ 26 (357)
T 2x1d_A 14 GYEHGSAAKAVIA 26 (357)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788888877764
No 4
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=73.40 E-value=2.2 Score=27.14 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH------HHhC---chHHH----HHHHhhcccCCCHHHHHHhhcC
Q psy13511 36 RRVYDATLASV------RENF---PQYVE----EIEGTADGAKVPFHKMSRKLKE 77 (88)
Q Consensus 36 ~~~a~~~~~~i------~~~~---P~y~e----EmrGIAdGAgv~fedI~lin~~ 77 (88)
-...+++...+ +... |+++. =.+=||.|||++..||--+-+|
T Consensus 44 ~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~RIA~GSG~~v~eVn~LLkq 98 (109)
T 1qb2_A 44 MARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQ 98 (109)
T ss_dssp HHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHHHHccCCCCHHHHHHHHHH
Confidence 34555666655 4555 99987 6788999999999999766543
No 5
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=66.77 E-value=1.5 Score=27.82 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHhCchHHH--HHHHhhcccCCCHHHHHHhhcC
Q psy13511 47 RENFPQYVE--EIEGTADGAKVPFHKMSRKLKE 77 (88)
Q Consensus 47 ~~~~P~y~e--EmrGIAdGAgv~fedI~lin~~ 77 (88)
+...|+++. =.+=||.|||++..||--+-+|
T Consensus 60 Er~~P~ii~~SR~~RIA~GSG~~v~eVn~LLkq 92 (105)
T 1hq1_A 60 ERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQ 92 (105)
T ss_dssp HHHCGGGCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhhChhhcCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 345688763 5677999999999999766543
No 6
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=64.26 E-value=16 Score=23.12 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHhhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhc
Q psy13511 5 GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTAD 62 (88)
Q Consensus 5 G~~~g~~I~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAd 62 (88)
|+.+++.|.+.|... ..+ =++..+..+++.+..+.+..|+.|++|.---|
T Consensus 42 gk~lK~~lpeAl~t~------C~K--CTekQK~~~~kvi~~l~~n~P~~W~~L~~KyD 91 (109)
T 2gvs_A 42 GKELKSVIPDALSNE------CAK--CNEKQKEGTKKVLKHLINHKPDVWAQLKAKYD 91 (109)
T ss_dssp HHHHHHHTTHHHHST------TTT--SCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHhcc------CCC--CCHHHHHHHHHHHHHHHHcChHHHHHHHHHHC
Confidence 555666666665432 111 26777999999999999999999999975544
No 7
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=60.33 E-value=2.3 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHHH------HHhCchHHH--HHHHhhcccCCCHHHHHHhhcC
Q psy13511 38 VYDATLASV------RENFPQYVE--EIEGTADGAKVPFHKMSRKLKE 77 (88)
Q Consensus 38 ~a~~~~~~i------~~~~P~y~e--EmrGIAdGAgv~fedI~lin~~ 77 (88)
..+++...+ +...|+++. =.+=||.|||++..||--+-+|
T Consensus 54 ~lkr~~aII~SMT~~Er~~P~ii~~SR~~RIA~GSG~~v~eVn~LLkq 101 (119)
T 2jqe_A 54 KMKKFRVIMDSMTEEELLNPKIIDSSRIRRIAIGSGTSPQEVKELLNY 101 (119)
T ss_dssp HHHHHHHHHHHSCHHHHHCGGGCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHhChhhcCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 344455544 445687764 4677999999999999766543
No 8
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=59.16 E-value=17 Score=23.19 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHHhhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhc
Q psy13511 4 RGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTAD 62 (88)
Q Consensus 4 iG~~~g~~I~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAd 62 (88)
.|+.+++.|.+.|... ..+ =++..+..+++.+..+.+..|+.|++|.---|
T Consensus 39 egk~lK~~lpeAl~t~------C~K--CTekQK~~~~kvi~~l~~n~P~~W~~L~~KyD 89 (112)
T 1k19_A 39 EGKELKEHLQDAIENG------CKK--CTENQEKGAYRVIEHLIKNEIEIWRELTAKYD 89 (112)
T ss_dssp HHHHHHHHHHHHTTTT------CTT--SCSHHHHHHHHHHHHHHHHHSCHHHHHHHSST
T ss_pred HHHHHHHHhHHHHhcc------CCC--CCHHHHHHHHHHHHHHHHcChHHHHHHHHHHC
Confidence 3666666666665432 111 26666899999999999999999999865433
No 9
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=58.28 E-value=6.5 Score=25.77 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH------HhC---chHH----HHHHHhhcccCCCHHHHHHhhcC
Q psy13511 36 RRVYDATLASVR------ENF---PQYV----EEIEGTADGAKVPFHKMSRKLKE 77 (88)
Q Consensus 36 ~~~a~~~~~~i~------~~~---P~y~----eEmrGIAdGAgv~fedI~lin~~ 77 (88)
-+..+++...|. ... |+++ .=.+=||.|||++..||--+-+|
T Consensus 57 e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SRk~RIA~GSG~~v~eVn~LLkq 111 (129)
T 1mfq_C 57 MARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQ 111 (129)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHhcCCCcccccCChHHHHHHHccCCCCHHHHHHHHHH
Confidence 344555555552 344 8888 26788999999999999766554
No 10
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=57.74 E-value=8.6 Score=25.98 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=28.9
Q ss_pred cccccCHHHHHHHHHHHHHHHHhCchHHHHHHHh
Q psy13511 27 LPLYETDAGRRVYDATLASVRENFPQYVEEIEGT 60 (88)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGI 60 (88)
.....|+.+++++.+=...++.|.-+..+|+.||
T Consensus 187 ~~~~~T~~g~~~a~~r~~~m~~f~~~~~~E~~~~ 220 (220)
T 2pq7_A 187 PETFWTETARKMAEDRYSFVVEFVQRFLAEWGQI 220 (220)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456799999999999999999999999999775
No 11
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=57.45 E-value=10 Score=26.01 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred hcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhcc
Q psy13511 26 YLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADG 63 (88)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAdG 63 (88)
+..+..|+.+++++.+=...++.|.-.+.+|+.|...|
T Consensus 181 l~~~~~T~~gr~~ae~r~~~m~~fl~~~~~E~~~~~~~ 218 (225)
T 2qgs_A 181 LKDLMHTPTAKKLAEERHQFMIQYLKQFMSEWNFNKEL 218 (225)
T ss_dssp SGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34456799999999999999999999999999777665
No 12
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=56.83 E-value=17 Score=25.53 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=36.2
Q ss_pred ccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhcccCCCHHH
Q psy13511 28 PLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHK 70 (88)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAdGAgv~fed 70 (88)
....|+.++++|.+=...++.|.-+..+|+.|...|..-...+
T Consensus 183 ~~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~g~~~~~~~~~~~ 225 (239)
T 3gw7_A 183 QTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEGVDHKVID 225 (239)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCTTTHH
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3356999999999999999999999999999987776655444
No 13
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=53.94 E-value=7.3 Score=19.70 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=20.0
Q ss_pred HHHhhcccCCCHHHHHHhhcCCcchhh
Q psy13511 57 IEGTADGAKVPFHKMSRKLKERPTELR 83 (88)
Q Consensus 57 mrGIAdGAgv~fedI~lin~~~~~~~~ 83 (88)
+..||.=.|++..+|.-+|. .+..|.
T Consensus 13 l~~Ia~~~~~~~~~l~~~N~-~~~~l~ 38 (48)
T 1e0g_A 13 LSSIAKRHGVNIKDVMRWNS-DTANLQ 38 (48)
T ss_dssp HHHHHHHHTCCHHHHHHHCS-CGGGCC
T ss_pred HHHHHHHHCcCHHHHHHhCC-CCCcCC
Confidence 45677778999999999998 655543
No 14
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A
Probab=52.67 E-value=3.2 Score=28.83 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=28.3
Q ss_pred hCchHHHHHHHhhcccCCCHHHHHHhhcCCcchhhhc
Q psy13511 49 NFPQYVEEIEGTADGAKVPFHKMSRKLKERPTELRSL 85 (88)
Q Consensus 49 ~~P~y~eEmrGIAdGAgv~fedI~lin~~~~~~~~~~ 85 (88)
.-|++++|++-+|.=.|++++.|+.+-..-+.+-||-
T Consensus 144 l~peale~f~~fa~~~Gl~~e~~~~~dn~c~~~~~~~ 180 (185)
T 3cqn_A 144 LPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPRSH 180 (185)
T ss_dssp CCGGGHHHHHHHHHHTTCCGGGSEECCCCCC------
T ss_pred CCHHHHHHHHHHHHHcCCCHHHEEEecCCCCCCCccc
Confidence 4689999999999999999999999887777777763
No 15
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=45.80 E-value=18 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=28.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhh
Q psy13511 28 PLYETDAGRRVYDATLASVRENFPQYVEEIEGTA 61 (88)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIA 61 (88)
....|+.++++|.+=...++.|.-+..+|+.|.+
T Consensus 182 ~~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~~~~ 215 (223)
T 3dto_A 182 DLMNTETGKQLAKERHVFMEQFIERFLSEWNGDM 215 (223)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3346999999999999999999999999998764
No 16
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=44.14 E-value=23 Score=24.51 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.9
Q ss_pred cccCHHHHHHHHHHHHHHHHhCchHHHHHHHhh
Q psy13511 29 LYETDAGRRVYDATLASVRENFPQYVEEIEGTA 61 (88)
Q Consensus 29 ~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIA 61 (88)
...|+.++++|.+=...++.|.-+..+|+.|..
T Consensus 183 ~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~~~~ 215 (223)
T 3djb_A 183 LMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQI 215 (223)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 346999999999999999999999999998764
No 17
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.25 E-value=10 Score=22.45 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.0
Q ss_pred HhCchHHHHHHHhhcccCCCHHHHHHhhcCCcc
Q psy13511 48 ENFPQYVEEIEGTADGAKVPFHKMSRKLKERPT 80 (88)
Q Consensus 48 ~~~P~y~eEmrGIAdGAgv~fedI~lin~~~~~ 80 (88)
.-.|. -+|+..||+..|+|.+-|=.|=|.|-.
T Consensus 27 n~~Ps-~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 27 NMEPN-SDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp CSSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 34555 478999999999999999999887644
No 18
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=37.58 E-value=27 Score=19.85 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCchHHHHHHHhhcccCCCHHH
Q psy13511 39 YDATLASVRENFPQYVEEIEGTADGAKVPFHK 70 (88)
Q Consensus 39 a~~~~~~i~~~~P~y~eEmrGIAdGAgv~fed 70 (88)
..+|+...-.-.|.--.-++-+|||-|.|++.
T Consensus 29 larwlarnvagdprseqalqrladgdgtplea 60 (66)
T 3kxy_T 29 LARWLARNVAGDPRSEQALQRLADGDGTPLEA 60 (66)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHTCCCCGGG
T ss_pred HHHHHHHhccCCccHHHHHHHHhcCCCCcchh
Confidence 45677777778899999999999999999873
No 19
>2qkw_A Avirulence protein; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Pseudomonas syringae} SCOP: a.8.8.1 PDB: 1r5e_A
Probab=33.76 E-value=16 Score=24.85 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.8
Q ss_pred HhhcccCCCHHHHHHhhcCCcchhhh
Q psy13511 59 GTADGAKVPFHKMSRKLKERPTELRS 84 (88)
Q Consensus 59 GIAdGAgv~fedI~lin~~~~~~~~~ 84 (88)
-+||-||+|-++.-+||.+-|..||.
T Consensus 42 ~L~eaagLpr~qh~Fi~n~ap~sLR~ 67 (164)
T 2qkw_A 42 QLAESAGLPRDQHEFVSSQAPQSLRN 67 (164)
T ss_dssp HHHHHCCCCHHHHTTTSSSCCSSGGG
T ss_pred HHHHhcCCCHHHHHHhccCCCHHHHH
Confidence 47899999999999999999999985
No 20
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=31.80 E-value=50 Score=16.54 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=8.6
Q ss_pred chHHHHHHHhhcccCC
Q psy13511 51 PQYVEEIEGTADGAKV 66 (88)
Q Consensus 51 P~y~eEmrGIAdGAgv 66 (88)
-.+.=|=+.||.|+|.
T Consensus 19 kaiawedkaiaqgagy 34 (35)
T 3r46_A 19 KAIAWEDKAIAQGAGY 34 (35)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHhhHHHHHcccCC
Confidence 3444566788888874
No 21
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=31.46 E-value=82 Score=18.50 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=30.2
Q ss_pred HHHHHHHHhhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHH
Q psy13511 9 SGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIE 58 (88)
Q Consensus 9 g~~I~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmr 58 (88)
-..+...+......++.+.+...+++.+++++++......|.+ .+++|-
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~-~~~~~~ 114 (164)
T 2lig_A 66 LQNAKTTLAQAAAHYANFKNMTPLPAMAEASANVDEKYQRYQA-ALAELI 114 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445555555555555455555566678888888888877777 344443
No 22
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=30.25 E-value=54 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHh
Q psy13511 36 RRVYDATLASVRENFPQYVEEIEGT 60 (88)
Q Consensus 36 ~~~a~~~~~~i~~~~P~y~eEmrGI 60 (88)
+..+..|+..++++.|...+||+-.
T Consensus 61 keH~g~~lelLrr~Dp~~~~~l~~y 85 (95)
T 3k6c_A 61 KEHAAMLLEWIRRCDPAFDKELKDY 85 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 6778999999999999999999853
No 23
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=28.81 E-value=47 Score=22.70 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.9
Q ss_pred ccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhh
Q psy13511 28 PLYETDAGRRVYDATLASVRENFPQYVEEIEGTA 61 (88)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIA 61 (88)
.+..|+.+++++.+=...++.|.-.+.+|+.|..
T Consensus 188 ~~~~T~~gr~~ae~r~~~m~~fl~~~~~E~~~~~ 221 (231)
T 2pjq_A 188 ALMNTDTAKALAAHRTAVMHEFVDQFKAEWTADD 221 (231)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999995543
No 24
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=28.56 E-value=83 Score=21.51 Aligned_cols=59 Identities=12% Similarity=-0.086 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhcccCCCH
Q psy13511 7 TFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPF 68 (88)
Q Consensus 7 ~~g~~I~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAdGAgv~f 68 (88)
+....|-.....-...|++-. ..+..-+...+|.+.|..-+-.=+.|-++|=+|.+|=-
T Consensus 92 aTA~RIVsfaT~FF~~yq~qh---Pd~~~ee~L~~Fm~lIgGGiEqGF~EArdIL~GL~Vle 150 (175)
T 3sjr_A 92 SHSQHLLLGMEILMELYRQQH---PDWTAPAIRQAFAPLARAGLERGYQEACQVLRQLNVYT 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccccC
Confidence 344555555444344443222 23333578899999999999999999999999998843
No 25
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=26.85 E-value=67 Score=19.86 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHh
Q psy13511 36 RRVYDATLASVRENFPQYVEEIEGT 60 (88)
Q Consensus 36 ~~~a~~~~~~i~~~~P~y~eEmrGI 60 (88)
+..+..|+..+++..|+-.+||+-.
T Consensus 61 keH~g~~l~~Lrr~dp~~~~~l~~y 85 (95)
T 1zpy_A 61 KEHAAMLLEWIRRCDPAFDKELKDY 85 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 5677889999999999999999864
No 26
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=25.82 E-value=42 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhCchHHHHHH
Q psy13511 36 RRVYDATLASVRENFPQYVEEIE 58 (88)
Q Consensus 36 ~~~a~~~~~~i~~~~P~y~eEmr 58 (88)
++-++.+++.+++.+|.+++|+.
T Consensus 147 ~qEvq~Lld~l~~~~p~LveElp 169 (333)
T 2x49_A 147 IQETKHMLDQLEAKFPDLLKEVL 169 (333)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHHHh
Confidence 56778889999999999999983
No 27
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.54 E-value=63 Score=17.45 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=22.9
Q ss_pred CchHHHHHHHhhcccCCCHHHHHHhhcCCc
Q psy13511 50 FPQYVEEIEGTADGAKVPFHKMSRKLKERP 79 (88)
Q Consensus 50 ~P~y~eEmrGIAdGAgv~fedI~lin~~~~ 79 (88)
.|. ++.+.-||+..||+.+++|-.....+
T Consensus 41 ~p~-~~~l~~ia~~l~v~~~~l~~~~~~~~ 69 (77)
T 2k9q_A 41 APV-VVKYIAFLRSKGVDLNALFDRIIVNK 69 (77)
T ss_dssp CCH-HHHHHHHHHHTTCCHHHHHHHHSSSC
T ss_pred CCC-HHHHHHHHHHhCcCHHHHhCccccCC
Confidence 454 57789999999999999987765443
No 28
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=25.43 E-value=70 Score=24.19 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHhhcccCCCHHHH
Q psy13511 36 RRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKM 71 (88)
Q Consensus 36 ~~~a~~~~~~i~~~~P~y~eEmrGIAdGAgv~fedI 71 (88)
++-++.+++.+++.+|.+++|+. .-+|+-.|
T Consensus 197 ~QEvq~LLd~L~~~~P~LVeEl~-----~~l~l~~i 227 (383)
T 4a5p_A 197 IQETKNMLDQFENRYPDLLXEVF-----RHVTIQRI 227 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-----TTCCHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHH-----ccCCHHHH
Confidence 56678888999999999999996 35666555
No 29
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=23.52 E-value=79 Score=19.35 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHH
Q psy13511 34 AGRRVYDATLASVRENFPQYVEEIEG 59 (88)
Q Consensus 34 ~~~~~a~~~~~~i~~~~P~y~eEmrG 59 (88)
.+.+-+..|+..++..||++.+-+-|
T Consensus 66 rG~~a~~aFlesL~~~yp~L~~lltg 91 (93)
T 4i16_A 66 KGQRGYVVFLESLEFYYPELYKLVTG 91 (93)
T ss_dssp SHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred cCchHHHHHHHHHHHHCHHHHHHccC
Confidence 34567788999999999999987765
No 30
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.81 E-value=59 Score=16.67 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=18.7
Q ss_pred hCchHHHHHHHhhcccCCCHHHHH
Q psy13511 49 NFPQYVEEIEGTADGAKVPFHKMS 72 (88)
Q Consensus 49 ~~P~y~eEmrGIAdGAgv~fedI~ 72 (88)
..| -.+.+.-||+..||+.++++
T Consensus 43 ~~~-~~~~l~~i~~~l~~~~~~l~ 65 (68)
T 2r1j_L 43 TEP-NGENLLALSKALQCSPDYLL 65 (68)
T ss_dssp SCC-BHHHHHHHHHHTTSCHHHHH
T ss_pred CCC-CHHHHHHHHHHhCCCHHHHh
Confidence 455 35778999999999999886
No 31
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=21.69 E-value=61 Score=20.20 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHh
Q psy13511 36 RRVYDATLASVRENFPQYVEEIEGT 60 (88)
Q Consensus 36 ~~~a~~~~~~i~~~~P~y~eEmrGI 60 (88)
......|...+++..|.+++++.|=
T Consensus 78 ~~A~~~F~~~L~e~dp~L~~~L~~~ 102 (107)
T 3kat_A 78 RKCKDGLYQALKETHPHLIMELWEK 102 (107)
T ss_dssp TTHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhh
Confidence 4556789999999999999999775
No 32
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=21.64 E-value=1.4e+02 Score=20.65 Aligned_cols=35 Identities=14% Similarity=-0.032 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHH-HhhcccCC
Q psy13511 32 TDAGRRVYDATLASVRENFPQYVEEIE-GTADGAKV 66 (88)
Q Consensus 32 ~~~~~~~a~~~~~~i~~~~P~y~eEmr-GIAdGAgv 66 (88)
.++-+.+|..+...+++.+|..++-+. ..-.|.-+
T Consensus 192 Q~EIR~lA~~m~~~l~~~~P~~~~a~~~~~~~g~~l 227 (232)
T 4gt9_A 192 QWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDIL 227 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHChHHHHHHHhhCcCcccc
Confidence 577799999999999999999988753 33344433
No 33
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=21.57 E-value=62 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCchHHHHHH
Q psy13511 36 RRVYDATLASVRENFPQYVEEIE 58 (88)
Q Consensus 36 ~~~a~~~~~~i~~~~P~y~eEmr 58 (88)
++-++.+++.+++.+|.+++|+.
T Consensus 192 ~qEvq~LLd~l~~~~P~LVeEl~ 214 (382)
T 3mix_A 192 RQETKQLIDHLKESYPVLVEEVT 214 (382)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHChHHHHHhc
Confidence 56678888999999999999993
No 34
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.16 E-value=58 Score=17.72 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHHHHHHHH--hCchHHHHHHHhhcccCCCHHHHHHhhc
Q psy13511 40 DATLASVRE--NFPQYVEEIEGTADGAKVPFHKMSRKLK 76 (88)
Q Consensus 40 ~~~~~~i~~--~~P~y~eEmrGIAdGAgv~fedI~lin~ 76 (88)
..++..+++ ..|. ++.+.-||+..||+.++++--..
T Consensus 38 ~~~i~~~e~g~~~~~-~~~l~~ia~~l~v~~~~l~~~~~ 75 (82)
T 3s8q_A 38 RTYISGIERNSRNLT-IKSLELIMKGLEVSDVVFFEMLI 75 (82)
T ss_dssp HHHHHHHHTTCCCCB-HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC-HHHHHHHHHHHCcCHHHHhcCCh
Confidence 344444543 3554 58899999999999999986543
No 35
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Probab=21.03 E-value=55 Score=22.41 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHhCchHHHHHHHhhcccCCCHHHHHHhhcC-----Ccchhhhc
Q psy13511 45 SVRENFPQYVEEIEGTADGAKVPFHKMSRKLKE-----RPTELRSL 85 (88)
Q Consensus 45 ~i~~~~P~y~eEmrGIAdGAgv~fedI~lin~~-----~~~~~~~~ 85 (88)
.+-.+--....=+-.||...|++.+.||--|-. -||.||.|
T Consensus 110 nVGaWrqAcY~pLv~iaa~~~wDid~iFn~hprL~iwYVPTklRqL 155 (194)
T 2vy1_A 110 NVGSWRQACYKPLVNIACRHGWDIDAVFNAHPRLSIWYVPTKLRQL 155 (194)
T ss_dssp CHHHHHHHTHHHHHHHHHTTTTCHHHHHHHSTTGGGSCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCChhhhhcCCCceEEEeeccHHHHH
Confidence 344555566677788999999999999977654 47888876
No 36
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.06 E-value=65 Score=17.07 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=20.3
Q ss_pred CchHHHHHHHhhcccCCCHHHHHHhh
Q psy13511 50 FPQYVEEIEGTADGAKVPFHKMSRKL 75 (88)
Q Consensus 50 ~P~y~eEmrGIAdGAgv~fedI~lin 75 (88)
.|. .+.+.-||+..||+.++++--.
T Consensus 49 ~~~-~~~l~~la~~l~~~~~~l~~~~ 73 (77)
T 2b5a_A 49 NIS-LINIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp CCB-HHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCC-HHHHHHHHHHhCcCHHHHhccc
Confidence 453 5778999999999999998654
Done!