RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13511
         (88 letters)



>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa
          form; zymogen, NTN-hydrolase, penicillin biosynthesis;
          1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
          Length = 357

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          G     +I   ++ +  L        + +  ++V       + E +P+Y EEI G A GA
Sbjct: 18 GSAAKAVIARSIDFAVDLIRGKTKKTDEEL-KQVLSQLGRVIEERWPKYYEEIRGIAKGA 76

Query: 65 KVPFHKM 71
          +    ++
Sbjct: 77 ERDVSEI 83


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.038
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 30/91 (32%)

Query: 1   MTSRGRTFSGIIKSFLETSGPLNDTYL----PLYETDAGRRVYDATLASVRENFPQYVEE 56
            + R   FS     FL  + P +   L     L   D  +   + +  +     P Y   
Sbjct: 409 FSERKLKFS---NRFLPVASPFHSHLLVPASDLINKDLVKN--NVSFNAKDIQIPVY--- 460

Query: 57  IEGTADGAKVPFHKMSRKLKERPTELRSLST 87
              T DG+                +LR LS 
Sbjct: 461 --DTFDGS----------------DLRVLSG 473


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.16
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 11  IIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHK 70
           +++ F+E    L   Y  L      +       + +   + +  + +    D      + 
Sbjct: 78  MVQKFVEEV--LRINYKFLMS--PIKTEQRQP-SMMTRMYIEQRDRLYN--DNQVFAKYN 130

Query: 71  MSR-----KLKERPTELRS 84
           +SR     KL++   ELR 
Sbjct: 131 VSRLQPYLKLRQALLELRP 149


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 0.35
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 10/35 (28%)

Query: 12 IKSFLETSGPLNDTYLPLYETDAGRRVYDATLASV 46
          +K  L+ S       L LY  D+   +  A  A++
Sbjct: 22 LKK-LQAS-------LKLYADDSAPAL--AIKATM 46


>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
           visfatin, beryllium fluoride, nicotinamide
           D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
           sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
           2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
           2g95_A 2g96_A* 2g97_A* 3g8e_A*
          Length = 484

 Score = 27.4 bits (60), Expect = 0.51
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 6   RTFSGIIKSFLETSGPLNDTYLPLYET--DAGRRVYDATLASVREN 49
           RT +G   +  E  G L +    L  T    G+     +   +R+N
Sbjct: 434 RTPAGNFVTLEEGKGDLEEYGQDLLHTVFKNGKVTKSYSFDEIRKN 479


>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
           synthetase, AS-B, class B asparagine synthetase,
           AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
           c.26.2.1 d.153.1.1 PDB: 1q19_A*
          Length = 503

 Score = 24.7 bits (54), Expect = 4.9
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 53  YVEEIEGTADGAKVPFHKMSRKLKE 77
           Y E  +G +   +     + R+ + 
Sbjct: 312 YNEIFDGLSAEIQSGLFNVYRQAQG 336


>3f9s_A Putative polyketide cyclase; structural genomics, joint center
          for structural genomics, J protein structure
          initiative; 1.76A {Acidithiobacillus ferrooxidans atcc
          23}
          Length = 146

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 23 NDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEG-TADGAKVPFH 69
          +D   P    +     Y   + ++R  FP    +I+G  ADG  V   
Sbjct: 40 HDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFADGDAVVMT 87


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,273,178
Number of extensions: 62518
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 10
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)