RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13511
         (88 letters)



>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
           [TaxId: 1396]}
          Length = 417

 Score = 24.5 bits (53), Expect = 2.4
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 15  FLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEI 57
           F   +G +N   L    +D  R+ Y     +       Y + I
Sbjct: 118 FKSETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVI 160


>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
           {Human (Homo sapiens), E2 J2 [TaxId: 9606]}
          Length = 157

 Score = 23.2 bits (49), Expect = 5.0
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 18  TSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEI 57
           T G +  +     +       ++       E FP+ VEEI
Sbjct: 117 TLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEI 156


>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase
          {Epstein-barr virus [TaxId: 10376]}
          Length = 136

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 6/21 (28%)

Query: 20 GPLNDTYLPLYETDAGRRVYD 40
          GP+N    P Y  D G    D
Sbjct: 1  GPIN---HPQYPGDVG---LD 15


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 301,807
Number of extensions: 11371
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 5
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)