BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13512
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C67|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C67|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C68|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C68|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C69|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Galactose
pdb|3C69|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Galactose
Length = 761
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 42 SGIIKSFLETSGPLNDTY----LPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 97
+ ++++ + ++ PL+ + L E G+ + D T+A +P Y +I T DG
Sbjct: 119 TSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAG---EYPDYQRKISATRDGL 175
Query: 98 KVPFHKL 104
KV F K+
Sbjct: 176 KVTFGKV 182
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 4 PFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKS 47
P D T+A +P Y +I T DG KV F K R ++ S
Sbjct: 151 PLSDKTIAG---EYPDYQRKISATRDGLKVTFGKVRATWDLLTS 191
>pdb|3D3I|A Chain A, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
pdb|3D3I|B Chain B, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
Length = 761
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 42 SGIIKSFLETSGPLNDTY----LPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 97
+ ++++ + ++ PL+ + L E G+ + D T+A +P Y +I T DG
Sbjct: 119 TSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAG---EYPDYQRKISATRDGL 175
Query: 98 KVPFHKL 104
KV F K+
Sbjct: 176 KVTFGKV 182
Score = 28.1 bits (61), Expect = 2.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 4 PFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKS 47
P D T+A +P Y +I T DG KV F K R ++ S
Sbjct: 151 PLSDKTIAG---EYPDYQRKISATRDGLKVTFGKVRATWDLLTS 191
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 14 RENFPQYVE-EIEGTADGAKVPFHK-GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRV 71
REN P +E IEG G K + K G++++ + E + L D G V
Sbjct: 19 RENNPTVLECIIEGNDQGVKYSWKKDGKSYN-----WQEHNAAL--------RKDEGSLV 65
Query: 72 YDATLASVRENFPQYVEEIEGTADGAKVPFHKLFLLHMDDITPNVVHRKSAVEG 125
+ AS ++ + E G A + F K +L+ +P H K+ +EG
Sbjct: 66 FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLI----ASPAKTHEKTPIEG 115
>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
Length = 357
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 79 VRENFPQYVEEIEGTADGAKVPFHKLFLLH 108
+ E +P+Y EEI G A GA+ ++ +L+
Sbjct: 58 IEERWPKYYEEIRGIAKGAERDVSEIVMLN 87
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 13 VRENFPQYVEEIEGTADGAK 32
+ E +P+Y EEI G A GA+
Sbjct: 58 IEERWPKYYEEIRGIAKGAE 77
>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
Length = 357
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 79 VRENFPQYVEEIEGTADGAKVPFHKLFLLH 108
+ E +P+Y EEI G A GA+ ++ +L+
Sbjct: 58 IEERWPKYYEEIRGIAKGAERDVSEIVMLN 87
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 13 VRENFPQYVEEIEGTADGAK 32
+ E +P+Y EEI G A GA+
Sbjct: 58 IEERWPKYYEEIRGIAKGAE 77
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 18 PQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPLN 56
P+ + +++ KVPF T IK +LE +GP++
Sbjct: 320 PETIFDLKPLDPTVKVPFPTPTTIGAAIKHYLEITGPVS 358
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 18 PQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPLN 56
P+ + +++ KVPF T IK +LE +GP++
Sbjct: 320 PETIFDLKPLDPTVKVPFPTPTTIGAAIKHYLEITGPVS 358
>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 684
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 45 IKSFLETSGPLNDTYLPLYETDAGRRVYDATLA-SVRENFPQYVEEIEGTADGAKVPFHK 103
+K F + S P+ + Y P ++ R + A SV N ++ T D K+ K
Sbjct: 257 VKPFSDFSAPIEEGYFPKLDSQVASRTWPPRFAGSVFRN-------LDRTVDQVKIDVRK 309
Query: 104 LF 105
LF
Sbjct: 310 LF 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,429,417
Number of Sequences: 62578
Number of extensions: 223173
Number of successful extensions: 546
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 14
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)