BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13512
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40084|RTR1_YEAST RNA polymerase II subunit B1 CTD phosphatase RTR1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTR1 PE=1
SV=1
Length = 226
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 90 IEGTADGAKVPFHKLFLLHMDD---ITPNVVHRKSAVEGTVGCSSVCCNQKNEHYLGRYL 146
IE + A +PF K L M + IT ++ + C S C ++K YLGR+L
Sbjct: 4 IEDIKETALIPFQKHRQLSMHEAEVITLEII--------GLLCDSECKDEKTLKYLGRFL 55
Query: 147 KSDKHLDIKEER 158
D + D+ +ER
Sbjct: 56 TPDMYQDLVDER 67
>sp|Q9C0Y2|YKL1_SCHPO Putative cell agglutination protein PB2C8.01 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAPB2C8.01 PE=3 SV=1
Length = 1220
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 6 YDATLASVRENFPQYVEEIEGTADGAKVPFHKGRT--------FSGIIKSFLETSGPLND 57
Y TLAS E+ P VE ++ A + G SG + +E P
Sbjct: 771 YTTTLASASESVPGTVEVVDPEAGSVTTTIYSGSVEYTTVLADASGSVTGTVEVVEPAAG 830
Query: 58 TYLP-LYETDAGRRVYDATLASVRENFPQYVEEIE 91
T +Y +G VY TLAS E+ P VE ++
Sbjct: 831 TVTTTVY---SGSEVYTTTLASASESVPGTVEVVD 862
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 6 YDATLASVRENFPQYVEEIEGTADGAKVPFHKGR--------TFSGIIKSFLETSGPLND 57
Y TLA+ VE IE A + G T SG + +E P
Sbjct: 699 YTTTLATASGTVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEPAAG 758
Query: 58 TYLP-LYETDAGRRVYDATLASVRENFPQYVEEIE 91
T +Y +G VY TLAS E+ P VE ++
Sbjct: 759 TVTTTVY---SGSEVYTTTLASASESVPGTVEVVD 790
>sp|B9MFQ3|THIC_ACIET Phosphomethylpyrimidine synthase OS=Acidovorax ebreus (strain
TPSY) GN=thiC PE=3 SV=1
Length = 614
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 1 MNNP-FYDATLASVRENFPQYVEE-IEGTADGAKVPFHKGRTFSGIIKSFLETSGPLNDT 58
MN P + + LA RE FP + + G+ G +VP + +G + S +TSGP D
Sbjct: 1 MNAPDKFASLLALTREPFPASTKSYLAGSQPGLRVPVRDIQLTNGEVVSVYDTSGPYTD- 59
Query: 59 YLPLYETDAGRRVYDATLASVR 80
P + D + LASVR
Sbjct: 60 --PAVQIDVRK-----GLASVR 74
>sp|A1WBZ7|THIC_ACISJ Phosphomethylpyrimidine synthase OS=Acidovorax sp. (strain JS42)
GN=thiC PE=3 SV=1
Length = 614
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 1 MNNP-FYDATLASVRENFPQYVEE-IEGTADGAKVPFHKGRTFSGIIKSFLETSGPLNDT 58
MN P + + LA RE FP + + G+ G +VP + +G + S +TSGP D
Sbjct: 1 MNAPDKFASLLALTREPFPASTKSYLAGSQPGLRVPVRDIQLTNGEVVSVYDTSGPYTD- 59
Query: 59 YLPLYETDAGRRVYDATLASVR 80
P + D + LASVR
Sbjct: 60 --PAVQIDVRK-----GLASVR 74
>sp|Q15361|TTF1_HUMAN Transcription termination factor 1 OS=Homo sapiens GN=TTF1 PE=1
SV=3
Length = 905
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 18 PQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLA 77
P YV+ VPF + +TF II ET+ PL L G ++ T A
Sbjct: 797 PSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLEKMMEKKGTKI--QTPA 854
Query: 78 SVRENFPQYVEEIEGTADGAKVPFHKLFLLHMDDITPNVVHRKSAVEGTVGCSSVCCNQK 137
+ ++ F PF +F + DD + ++S EG C + CN
Sbjct: 855 APKQVF----------------PFRDIF-YYEDDSEGEDIEKES--EGQAPCMAHACNSS 895
Query: 138 NEHYLGRYL 146
GR++
Sbjct: 896 TLGGQGRWI 904
>sp|Q7MNM8|SYI_VIBVY Isoleucine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=ileS
PE=3 SV=1
Length = 948
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1 MNNPFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPL--NDT 58
+PFYD T+ ++ +V GT P H F+ K LE + P+ N
Sbjct: 312 FQHPFYDFTVPAI---LGDHVTTDSGTGVVHTAPGHGQEDFAVGQKYNLEVANPVGSNGV 368
Query: 59 YLPLYETDAGRRVYDATLASV 79
YLP E AG+ V+ A A V
Sbjct: 369 YLPDTELFAGQHVFKANDAVV 389
>sp|Q8DES7|SYI_VIBVU Isoleucine--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=ileS
PE=3 SV=1
Length = 948
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1 MNNPFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPL--NDT 58
+PFYD T+ ++ +V GT P H F+ K LE + P+ N
Sbjct: 312 FQHPFYDFTVPAI---LGDHVTTDSGTGVVHTAPGHGQEDFAVGQKYNLEVANPVGSNGV 368
Query: 59 YLPLYETDAGRRVYDATLASV 79
YLP E AG+ V+ A A V
Sbjct: 369 YLPDTELFAGQHVFKANDAVV 389
>sp|Q87S90|SYI_VIBPA Isoleucine--tRNA ligase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ileS PE=3 SV=1
Length = 942
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1 MNNPFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPL--NDT 58
+PFYD T+ ++ +V GT P H F+ K LE + P+ N
Sbjct: 312 FQHPFYDFTVPAI---LGDHVTTDSGTGVVHTAPGHGQEDFAVGQKYNLEVANPVGSNGV 368
Query: 59 YLPLYETDAGRRVYDATLASV 79
YLP E AG+ V+ A A V
Sbjct: 369 YLPDTELFAGQHVFKANDAVV 389
>sp|A7MTD6|SYI_VIBHB Isoleucine--tRNA ligase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=ileS PE=3 SV=1
Length = 942
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1 MNNPFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPL--NDT 58
+PFYD T+ ++ +V GT P H F+ K LE + P+ N
Sbjct: 312 FQHPFYDFTVPAI---LGDHVTTDSGTGVVHTAPGHGQEDFAVGNKYNLEVANPVGSNGV 368
Query: 59 YLPLYETDAGRRVYDATLASV 79
YLP E AG+ V+ A A V
Sbjct: 369 YLPDTELFAGQHVFKANDAVV 389
>sp|Q75DC5|ERB1_ASHGO Ribosome biogenesis protein ERB1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERB1
PE=3 SV=2
Length = 827
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 36 HKG--RTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGT 93
HKG RT S I S L + +D + ++E GR VY AT+ ++ N ++E +E
Sbjct: 462 HKGKIRTLS-IDPSGLWLATGSDDGTVRVWEILTGREVYKATIVDIKNNQDDHIETVEWN 520
Query: 94 AD 95
D
Sbjct: 521 PD 522
>sp|B7LWK4|CYSN_ESCF3 Sulfate adenylyltransferase subunit 1 OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=cysN
PE=3 SV=1
Length = 475
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 5 FYDATLASVRENFPQYVEEIEGTADGAKVPFH--KGRTFSGIIKSFLETSGPLNDTYLPL 62
+ + T +RE++ + E++ G D VP +G + +S L SGP T L +
Sbjct: 175 YSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMLWYSGP---TLLEV 231
Query: 63 YETDAGRRVYDA 74
ET +RV DA
Sbjct: 232 LETVEIQRVVDA 243
>sp|Q5V4L7|SURE_HALMA 5'-nucleotidase SurE OS=Haloarcula marismortui (strain ATCC 43049 /
DSM 3752 / JCM 8966 / VKM B-1809) GN=surE PE=3 SV=1
Length = 269
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 84 PQYVEEIEGTADGAKVPFHKLFLLHMDD---ITPNVVHRKSAVEGTVGCSSVCCNQKNEH 140
P ++ E++ DG V H HM D P R++ V+G V S + EH
Sbjct: 189 PSHLYEMDAEQDGDAVTLHDRIWEHMADGDIPDPEGTDRRAVVDGKVSVSPLTAPHTTEH 248
Query: 141 Y 141
+
Sbjct: 249 H 249
>sp|Q9X9U0|THIC_STRCO Phosphomethylpyrimidine synthase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=thiC PE=3 SV=1
Length = 612
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 24 IEGTADGAKVPFHKGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENF 83
+EG+ +VP + +G + +TSGP D PL +TD R LA +REN+
Sbjct: 43 VEGSRPDLRVPVRQVHLTNGQSVTLYDTSGPYTD---PLVDTDVRR-----GLAPLRENW 94
>sp|Q3IEA2|SYI_PSEHT Isoleucine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=ileS PE=3 SV=1
Length = 942
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 3 NPFYDATLASVRENFPQYVEEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPL--NDTYL 60
+PFYD ++ + ++V GT P H F ++ LE + P+ N YL
Sbjct: 315 HPFYDFSVPVI---VAEHVTTDSGTGVVHTAPGHGQEDFVAGLEYKLEVANPVGANGVYL 371
Query: 61 PLYETDAGRRVYDATLASVRE 81
P E AG+ V+ A AS+ E
Sbjct: 372 PDTELFAGQHVFKAN-ASIVE 391
>sp|P46937|YAP1_HUMAN Yorkie homolog OS=Homo sapiens GN=YAP1 PE=1 SV=2
Length = 504
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 64 ETDAGRRVYDATLASVRENFPQYVEEIEGT 93
E D G + +TL S + FP Y+E I GT
Sbjct: 422 EMDTGDTINQSTLPSQQNRFPDYLEAIPGT 451
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,250,741
Number of Sequences: 539616
Number of extensions: 2787740
Number of successful extensions: 6791
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6778
Number of HSP's gapped (non-prelim): 32
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)