Query psy13512
Match_columns 170
No_of_seqs 111 out of 324
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1d_A Acyl-coenzyme A\:6-amin 100.0 4.2E-29 1.4E-33 213.3 7.4 124 22-153 2-127 (357)
2 3gvz_A Uncharacterized protein 97.1 0.00013 4.5E-09 61.2 1.9 29 125-153 22-53 (299)
3 3fbx_A Putative phospholipase 76.1 5.4 0.00019 36.1 6.5 116 30-148 74-224 (559)
4 1dul_A Signal recognition part 61.3 3.2 0.00011 27.3 1.3 25 83-107 29-55 (69)
5 3gw7_A Uncharacterized protein 50.7 18 0.00062 28.8 4.5 49 52-101 175-223 (239)
6 1qb2_A SRP54, human signal rec 48.0 11 0.00037 26.8 2.4 22 84-105 68-93 (109)
7 1hq1_A Signal recognition part 42.6 7.6 0.00026 27.5 0.9 25 81-105 61-87 (105)
8 2pq7_A Predicted HD superfamil 41.3 17 0.00057 27.9 2.8 34 60-93 187-220 (220)
9 3dto_A BH2835 protein; all alp 40.5 20 0.00067 28.2 3.1 47 44-94 169-215 (223)
10 3djb_A Hydrolase, HD family; a 39.3 24 0.00081 27.7 3.4 36 59-94 180-215 (223)
11 1mfq_C SRP54, signal recogniti 38.4 12 0.00039 27.5 1.3 22 84-105 81-106 (129)
12 2jqe_A SRP54, signal recogniti 36.0 11 0.00038 27.2 0.9 25 81-105 70-96 (119)
13 2qgs_A Protein Se1688; alpha-h 35.1 26 0.00089 27.2 3.0 36 61-96 183-218 (225)
14 3cb2_A Gamma-1-tubulin, tubuli 31.2 68 0.0023 28.1 5.3 59 26-84 99-162 (475)
15 1k19_A Chemosensory protein CS 31.0 91 0.0031 22.1 5.1 55 36-98 38-92 (112)
16 2i3s_B Checkpoint serine/threo 26.3 43 0.0015 19.2 2.1 21 79-108 9-29 (36)
17 1gs9_A Apolipoprotein E, APOE4 22.1 2.1E+02 0.0071 21.2 5.9 27 36-62 55-85 (165)
No 1
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=99.95 E-value=4.2e-29 Score=213.32 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=106.1
Q ss_pred eeeeeccCCCcchHHHHHhHHHHHHHHHHhhhhhhhhcCCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhhccCCCCH
Q psy13512 22 EEIEGTADGAKVPFHKGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPF 101 (170)
Q Consensus 22 ~~i~~~GspyE~G~q~G~~~~~~I~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIAdGAgv~f 101 (170)
.+|.++|||||+|+|||++++++|++.+..|..++....+ ..|++.++.++++++.+++++|+|+|||+|||||+|+|+
T Consensus 2 ~~i~l~Gspye~G~~~G~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~eEi~GiA~g~~~~~ 80 (357)
T 2x1d_A 2 LHILCQGTPFEIGYEHGSAAKAVIARSIDFAVDLIRGKTK-KTDEELKQVLSQLGRVIEERWPKYYEEIRGIAKGAERDV 80 (357)
T ss_dssp CEEEEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHhhcCCCH
Confidence 3578899999999999999999999999999988775555 367888999999999999999999999999999999999
Q ss_pred HHHHHhccc-cccccccccccCCCCCCCCceEEEecC-CCeEEEEcCCCccCCC
Q psy13512 102 HKLFLLHMD-DITPNVVHRKSAVEGTVGCSSVCCNQK-NEHYLGRYLKSDKHLD 153 (170)
Q Consensus 102 edI~lLN~~-Eil~~~~~~~~~~~~~~gCTsv~~~~~-g~~ilaqNwD~~~~l~ 153 (170)
++|++||++ |++.. +. ...++||++++.++ | +++||||||...+.
T Consensus 81 ~~i~~ln~~~ei~~~-~~-----~~~~~CT~~~~~~~dg-~~~gRn~D~~~~~~ 127 (357)
T 2x1d_A 81 SEIVMLNTRTEFAYG-LK-----AARDGCTTAYCQLPNG-ALQGQNWDFFSATK 127 (357)
T ss_dssp HHHHHHHTHHHHHHH-HH-----HHHCC-EEEEECCTTC-CEEEEEEEECGGGG
T ss_pred HHHHhhhcHHHHhcc-cc-----CCCCCCCEEEEeCCCC-cEEEEeCCCchhhC
Confidence 999999996 87632 10 01268999999885 6 99999999988654
No 2
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=97.14 E-value=0.00013 Score=61.22 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=21.5
Q ss_pred CCCCCceEEEec---CCCeEEEEcCCCccCCC
Q psy13512 125 GTVGCSSVCCNQ---KNEHYLGRYLKSDKHLD 153 (170)
Q Consensus 125 ~~~gCTsv~~~~---~g~~ilaqNwD~~~~l~ 153 (170)
..+|||++++.+ .+.+|+||||||...+.
T Consensus 22 ~~~gCT~~~~~~~~T~dg~ilgRN~D~~~~~~ 53 (299)
T 3gvz_A 22 PVDACTLWGAAGTASMEGSLLAKNRDWKPDHA 53 (299)
T ss_dssp ----CEEEEEEGGGBSSSEEEEEEEEECSCSC
T ss_pred CCCCCceEEECCCcCCCCcEEEEEecCCcccC
Confidence 468999999988 43499999999988665
No 3
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cystein glycoprotein, hydrolase, lipid degradation, lysosome; HET: NAG PG4 PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Probab=76.05 E-value=5.4 Score=36.10 Aligned_cols=116 Identities=14% Similarity=0.197 Sum_probs=61.2
Q ss_pred CCcchHHHHHhHHHHHHHHHHhhhhhhhhcC-CCcC----ChHHHHHHHHHHHHHHH---hCCc--H-------HHHHHH
Q psy13512 30 GAKVPFHKGRTFSGIIKSFLETSGPLNDTYL-PLYE----TDAGRRVYDATLASVRE---NFPQ--Y-------VEEIEG 92 (170)
Q Consensus 30 pyE~G~q~G~~~~~~I~~~i~~~~~l~~~~~-~~~~----~~~~~~~~~~~l~~l~~---~~P~--y-------~EEm~G 92 (170)
.|-.||-=|-...++|......+... .+ ++.. .+..+++..+-+..+++ ..|+ | +.-++|
T Consensus 74 ayAAG~lEGyLT~~~Iy~h~~N~~~~---~c~~~~~~~~~~~~l~~fl~~N~~w~~~~~~~~~~d~yW~qv~l~l~Ql~G 150 (559)
T 3fbx_A 74 AYAAGVVEASVSEELIYMHWMNTVVN---YCGPFEYEVGYCEKLKNFLEANLEWMQREMELNPDSPYWHQVRLTLLQLKG 150 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT---TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHhhh---hccccccccccCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 36679999999999998765544321 11 1111 12233444444444432 2232 3 567899
Q ss_pred hhccC-----------CCCHHHHHHhcc-ccc---ccccccccc-CCCCCCCCceEEEec-C-CCeEEEEcCCC
Q psy13512 93 TADGA-----------KVPFHKLFLLHM-DDI---TPNVVHRKS-AVEGTVGCSSVCCNQ-K-NEHYLGRYLKS 148 (170)
Q Consensus 93 IAdGA-----------gv~fedI~lLN~-~Ei---l~~~~~~~~-~~~~~~gCTsv~~~~-~-g~~ilaqNwD~ 148 (170)
+.+|. .++..++++||+ .++ ...+..... .....+.||++.... + +.+++|||--.
T Consensus 151 L~~GY~~~~~~~~~~~~i~~~~~~~ln~~GDl~DL~~~l~~~~~~~~~~~g~CSaLikl~~~~~di~~aH~TW~ 224 (559)
T 3fbx_A 151 LEDSYEGRLTFPTGRFTIKPLGFLLLQISGDLEDLEPALNKTNTKPSLGSGSCSALIKLLPGGHDLLVAHNTWN 224 (559)
T ss_dssp HHHHHTTCCCCCSSCCCCCTTTGGGGTCHHHHHHHHHHTTCCC----------EEEEEECGGGCCEEEEEECEE
T ss_pred HHHHHHHhhcCCccccccCHHHHHHHhhhcCHHHHHHHhccCCCCCCCCCCCceEEEEECCCCcceEEEEcchh
Confidence 99883 255667899998 343 222211111 111245799998544 3 68999998643
No 4
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=61.29 E-value=3.2 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCcHH--HHHHHhhccCCCCHHHHHHh
Q psy13512 83 FPQYV--EEIEGTADGAKVPFHKLFLL 107 (170)
Q Consensus 83 ~P~y~--EEm~GIAdGAgv~fedI~lL 107 (170)
.|+++ .=.+=||.|||++..||--|
T Consensus 29 nP~ii~~SR~~RIA~GSG~~v~eVn~L 55 (69)
T 1dul_A 29 KPEIIKGSRKRRIAAGSGMQVQDVNRL 55 (69)
T ss_dssp CGGGCCHHHHHHHHHHTTCCHHHHHHH
T ss_pred CccccCHHHHHHHHccCCCCHHHHHHH
Confidence 46653 35688999999999999433
No 5
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=50.74 E-value=18 Score=28.76 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=39.0
Q ss_pred hhhhhhhcCCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhhccCCCCH
Q psy13512 52 SGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPF 101 (170)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIAdGAgv~f 101 (170)
|.+++. +-....|+.+++++.+=...++.|.-++.+|+.|...|..-..
T Consensus 175 ~eKLl~-L~~~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~g~~~~~~~~~ 223 (239)
T 3gw7_A 175 QTKLLK-LPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEGVDHKV 223 (239)
T ss_dssp TTTGGG-TTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCTTT
T ss_pred HHHHHh-hHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 334443 3445789999999999999999999999999999777766554
No 6
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=48.02 E-value=11 Score=26.84 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.9
Q ss_pred CcHHH----HHHHhhccCCCCHHHHH
Q psy13512 84 PQYVE----EIEGTADGAKVPFHKLF 105 (170)
Q Consensus 84 P~y~E----Em~GIAdGAgv~fedI~ 105 (170)
|+++. =.+=||.|||++..||-
T Consensus 68 P~ii~~~~SR~~RIA~GSG~~v~eVn 93 (109)
T 1qb2_A 68 AKVFSKQPGRIQRVARGSGVSTRDVQ 93 (109)
T ss_dssp HHHHHHSTHHHHHHHHHTTCCHHHHH
T ss_pred ccccccchHHHHHHHccCCCCHHHHH
Confidence 77776 57889999999999993
No 7
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=42.59 E-value=7.6 Score=27.48 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=19.6
Q ss_pred HhCCcHH--HHHHHhhccCCCCHHHHH
Q psy13512 81 ENFPQYV--EEIEGTADGAKVPFHKLF 105 (170)
Q Consensus 81 ~~~P~y~--EEm~GIAdGAgv~fedI~ 105 (170)
...|+++ -=.+=||.|||+++.||-
T Consensus 61 r~~P~ii~~SR~~RIA~GSG~~v~eVn 87 (105)
T 1hq1_A 61 RAKPEIIKGSRKRRIAAGSGMQVQDVN 87 (105)
T ss_dssp HHCGGGCCHHHHHHHHHHHTCCHHHHH
T ss_pred hhChhhcCHHHHHHHHccCCCCHHHHH
Confidence 4457764 457889999999999993
No 8
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=41.26 E-value=17 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHh
Q psy13512 60 LPLYETDAGRRVYDATLASVRENFPQYVEEIEGT 93 (170)
Q Consensus 60 ~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GI 93 (170)
-....|+.+++++.+-...++.|.-++.+|+.||
T Consensus 187 ~~~~~T~~g~~~a~~r~~~m~~f~~~~~~E~~~~ 220 (220)
T 2pq7_A 187 PETFWTETARKMAEDRYSFVVEFVQRFLAEWGQI 220 (220)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999999999875
No 9
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=40.47 E-value=20 Score=28.21 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhhhhhcCCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhh
Q psy13512 44 IIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTA 94 (170)
Q Consensus 44 ~I~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIA 94 (170)
.|.++. .+++. +-....|+.+++++.+=...++.|.-++.+|+.|++
T Consensus 169 ~i~Hf~---eKLl~-l~~~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~~~~ 215 (223)
T 3dto_A 169 AINHFY---EKLFK-LKDLMNTETGKQLAKERHVFMEQFIERFLSEWNGDM 215 (223)
T ss_dssp HHHHHH---HTGGG-CTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHH---HHHHH-HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455543 33443 345578999999999999999999999999998765
No 10
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=39.33 E-value=24 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred cCCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhh
Q psy13512 59 YLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTA 94 (170)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIA 94 (170)
+-....|+.+++++.+=...++.|.-++.+|+.|++
T Consensus 180 L~~~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~~~~ 215 (223)
T 3djb_A 180 LKDLMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQI 215 (223)
T ss_dssp GTTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 335578999999999999999999999999998764
No 11
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=38.38 E-value=12 Score=27.55 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.2
Q ss_pred CcHH----HHHHHhhccCCCCHHHHH
Q psy13512 84 PQYV----EEIEGTADGAKVPFHKLF 105 (170)
Q Consensus 84 P~y~----EEm~GIAdGAgv~fedI~ 105 (170)
|+++ .=.+=||.|||+++.||-
T Consensus 81 P~ii~~~~SRk~RIA~GSG~~v~eVn 106 (129)
T 1mfq_C 81 AKVFSKQPGRIQRVARGSGVSTRDVQ 106 (129)
T ss_dssp HHHHHHCTHHHHHHHHHTTCCHHHHH
T ss_pred cccccCChHHHHHHHccCCCCHHHHH
Confidence 6766 256889999999999993
No 12
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=35.96 E-value=11 Score=27.18 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=19.5
Q ss_pred HhCCcHH--HHHHHhhccCCCCHHHHH
Q psy13512 81 ENFPQYV--EEIEGTADGAKVPFHKLF 105 (170)
Q Consensus 81 ~~~P~y~--EEm~GIAdGAgv~fedI~ 105 (170)
...|+++ -=.+=||.|||+++.||-
T Consensus 70 r~~P~ii~~SR~~RIA~GSG~~v~eVn 96 (119)
T 2jqe_A 70 LLNPKIIDSSRIRRIAIGSGTSPQEVK 96 (119)
T ss_dssp HHCGGGCCHHHHHHHHHHHTSCHHHHH
T ss_pred HhChhhcCHHHHHHHHccCCCCHHHHH
Confidence 4457764 356889999999999993
No 13
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=35.15 E-value=26 Score=27.17 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhhcc
Q psy13512 61 PLYETDAGRRVYDATLASVRENFPQYVEEIEGTADG 96 (170)
Q Consensus 61 ~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIAdG 96 (170)
....|+.+++++.+=...++.+.-++.+|+.|...|
T Consensus 183 ~~~~T~~gr~~ae~r~~~m~~fl~~~~~E~~~~~~~ 218 (225)
T 2qgs_A 183 DLMHTPTAKKLAEERHQFMIQYLKQFMSEWNFNKEL 218 (225)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 446899999999999999999999999999776655
No 14
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=31.22 E-value=68 Score=28.13 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=36.3
Q ss_pred eccCCCcchHHHHHhHHHHHHHHHHhhhhhhhhcCCC-----cCChHHHHHHHHHHHHHHHhCC
Q psy13512 26 GTADGAKVPFHKGRTFSGIIKSFLETSGPLNDTYLPL-----YETDAGRRVYDATLASVRENFP 84 (170)
Q Consensus 26 ~~GspyE~G~q~G~~~~~~I~~~i~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~l~~~~P 84 (170)
-.|+.|++||..|+...+++.+.|+....-.+.+..+ .....+--++..++..++..||
T Consensus 99 gAgnn~a~G~~~g~e~~d~~~d~Ir~~~E~cD~lqgf~i~~slGGGTGSG~~s~l~e~l~dey~ 162 (475)
T 3cb2_A 99 GAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYP 162 (475)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSSHHHHHHHHHHHHHHHHST
T ss_pred CCCCCchhhhhhhHhhHHHHHHHHHHHHhcCCCcceeEEeccCCCCCCcChHHHHHHHHHHHcC
Confidence 3678999999999999998888887655322211111 1222233445666777776653
No 15
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=30.97 E-value=91 Score=22.06 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHhHHHHHHHHHHhhhhhhhhcCCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhhccCC
Q psy13512 36 HKGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAK 98 (170)
Q Consensus 36 q~G~~~~~~I~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIAdGAg 98 (170)
.-|+.|++.|.+.|.. -.. -=++..++.+.+++..+.+..|+.|++|.---|=.|
T Consensus 38 pegk~lK~~lpeAl~t-------~C~-KCTekQK~~~~kvi~~l~~n~P~~W~~L~~KyDP~g 92 (112)
T 1k19_A 38 PEGKELKEHLQDAIEN-------GCK-KCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTG 92 (112)
T ss_dssp HHHHHHHHHHHHHTTT-------TCT-TSCSHHHHHHHHHHHHHHHHHSCHHHHHHHSSTTTC
T ss_pred HHHHHHHHHhHHHHhc-------cCC-CCCHHHHHHHHHHHHHHHHcChHHHHHHHHHHCCCc
Confidence 3577777777776433 111 235666888999999999999999999976655544
No 16
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=26.30 E-value=43 Score=19.16 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=14.4
Q ss_pred HHHhCCcHHHHHHHhhccCCCCHHHHHHhc
Q psy13512 79 VRENFPQYVEEIEGTADGAKVPFHKLFLLH 108 (170)
Q Consensus 79 l~~~~P~y~EEm~GIAdGAgv~fedI~lLN 108 (170)
++..+|+. |..++|++|++++
T Consensus 9 l~llYP~~---------~~E~s~eEllA~s 29 (36)
T 2i3s_B 9 FNLIYPEN---------DEEFNTEEILAMI 29 (36)
T ss_dssp HHHHSTTS---------SCCCCHHHHHHHH
T ss_pred eEEecCCC---------CcEecHHHHHHHh
Confidence 34567765 6677888888764
No 17
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=22.05 E-value=2.1e+02 Score=21.25 Aligned_cols=27 Identities=7% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHHHHHhhh----hhhhhcCCC
Q psy13512 36 HKGRTFSGIIKSFLETSG----PLNDTYLPL 62 (170)
Q Consensus 36 q~G~~~~~~I~~~i~~~~----~l~~~~~~~ 62 (170)
+.|+++...|..+++... .+..++.|+
T Consensus 55 el~qel~~~l~~~ld~l~~~~~~l~~~L~P~ 85 (165)
T 1gs9_A 55 QVTQELRALMDETMKELKAYKSELEEQLTPV 85 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 567777777877776554 445556665
Done!