Query psy13512
Match_columns 170
No_of_seqs 111 out of 324
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 21:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13512.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13512hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dula_ a.36.1.1 (A:) Signal s 58.2 1.8 0.00013 27.0 1.3 26 80-105 26-53 (69)
2 d1qb2a_ a.36.1.1 (A:) SRP54M { 53.5 2.3 0.00017 28.4 1.3 39 69-107 44-95 (107)
3 d1n8va_ a.118.21.1 (A:) Chemos 49.0 24 0.0017 22.9 6.0 54 37-98 37-90 (101)
4 d2ffha2 a.36.1.1 (A:319-418) S 47.1 2.8 0.0002 27.8 0.9 26 80-105 55-82 (100)
5 d1hq1a_ a.36.1.1 (A:) Signal s 45.4 3 0.00022 27.8 0.9 26 81-106 61-88 (104)
6 d1qzxa2 a.36.1.1 (A:295-432) S 39.0 4.3 0.00031 28.3 0.9 35 72-106 80-122 (138)
7 d1fx0a1 a.69.1.1 (A:373-501) F 36.9 37 0.0027 22.6 5.7 32 61-92 75-106 (129)
8 d1skyb1 a.69.1.1 (B:372-502) F 35.6 50 0.0036 21.9 6.2 29 63-91 77-105 (131)
9 d1tubb1 c.32.1.1 (B:1-245) Tub 33.5 11 0.00078 28.3 2.5 62 25-86 95-162 (243)
10 d2jdia1 a.69.1.1 (A:380-510) F 28.7 70 0.0051 21.1 6.0 30 63-92 77-106 (131)
11 d3dtoa1 a.211.1.1 (A:2-213) Un 27.4 20 0.0015 25.7 3.1 32 61-92 181-212 (212)
12 d1ny9a_ a.181.1.1 (A:) Transcr 25.8 62 0.0045 20.1 5.0 34 63-96 25-59 (94)
13 d2btoa1 c.32.1.1 (A:3-246) Tub 24.6 41 0.003 24.9 4.5 61 25-85 97-163 (244)
No 1
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=58.19 E-value=1.8 Score=26.97 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHhCCcHH--HHHHHhhccCCCCHHHHH
Q psy13512 80 RENFPQYV--EEIEGTADGAKVPFHKLF 105 (170)
Q Consensus 80 ~~~~P~y~--EEm~GIAdGAgv~fedI~ 105 (170)
++..|+++ .=.+=||.|||++..|+-
T Consensus 26 ER~~P~ll~~SR~~RIA~GSG~~~~eVn 53 (69)
T d1dula_ 26 ERAKPEIIKGSRKRRIAAGSGMQVQDVN 53 (69)
T ss_dssp HHHCGGGCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHhChHhhchhHHHHHHccCCCCHHHHH
Confidence 34566653 345889999999999993
No 2
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.53 E-value=2.3 Score=28.45 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH------HhCCcHHH-------HHHHhhccCCCCHHHHHHh
Q psy13512 69 RRVYDATLASVR------ENFPQYVE-------EIEGTADGAKVPFHKLFLL 107 (170)
Q Consensus 69 ~~~~~~~l~~l~------~~~P~y~E-------Em~GIAdGAgv~fedI~lL 107 (170)
.....++...+. .-.|++.. =++=||.|||++..||-.|
T Consensus 44 ~~~lk~~~~ii~SMT~~Er~~p~~~~~~~~~~sR~~RIA~GSG~~~~eVn~L 95 (107)
T d1qb2a_ 44 MARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL 95 (107)
T ss_dssp HHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccHhhcCCCchhhhhccChHHHHHHHhccCCCHHHHHHH
Confidence 344666666664 34555321 3788999999999999443
No 3
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=48.97 E-value=24 Score=22.95 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=39.8
Q ss_pred HHHhHHHHHHHHHHhhhhhhhhcCCCcCChHHHHHHHHHHHHHHHhCCcHHHHHHHhhccCC
Q psy13512 37 KGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAK 98 (170)
Q Consensus 37 ~G~~~~~~I~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~GIAdGAg 98 (170)
-|+.|++.|.+.|...= . -=++..++.+.+++..+.+..|+.|++|.-.=|=.|
T Consensus 37 egk~lK~~lPeal~t~C-------~-kCT~kQK~~~~kvi~~l~~~~p~~w~~l~~KYDP~g 90 (101)
T d1n8va_ 37 EGKELKEHLQDAIENGC-------K-KCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTG 90 (101)
T ss_dssp HHHHHHHHHHHHHHHTT-------T-TCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHccc-------c-CCCHHHHHHHHHHHHHHHHcCcHHHHHHHHHHCcCc
Confidence 57788888888765421 1 235566788999999999999999999976554443
No 4
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=47.10 E-value=2.8 Score=27.78 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=19.0
Q ss_pred HHhCCcHH--HHHHHhhccCCCCHHHHH
Q psy13512 80 RENFPQYV--EEIEGTADGAKVPFHKLF 105 (170)
Q Consensus 80 ~~~~P~y~--EEm~GIAdGAgv~fedI~ 105 (170)
++..|+++ -=++=||.|||++..||-
T Consensus 55 Er~~p~ll~~sR~~RIA~GSG~~~~eV~ 82 (100)
T d2ffha2 55 ERKDPRILNGSRRKRIAKGSGTSVQEVN 82 (100)
T ss_dssp HHHCGGGCCHHHHHHHHHHHTSCHHHHH
T ss_pred hccCchhccHHHHHHHHccCCCCHHHHH
Confidence 34556653 345679999999999993
No 5
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=45.41 E-value=3 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=18.9
Q ss_pred HhCCcHH--HHHHHhhccCCCCHHHHHH
Q psy13512 81 ENFPQYV--EEIEGTADGAKVPFHKLFL 106 (170)
Q Consensus 81 ~~~P~y~--EEm~GIAdGAgv~fedI~l 106 (170)
...|+++ .=++=||.|||++..||-.
T Consensus 61 r~~p~~l~~SR~~RIA~GSG~~~~eV~~ 88 (104)
T d1hq1a_ 61 RAKPEIIKGSRKRRIAAGSGMQVQDVNR 88 (104)
T ss_dssp HHCGGGCCHHHHHHHHHHHTCCHHHHHH
T ss_pred hhccccccccHHHHHHccCCCCHHHHHH
Confidence 4456653 3356699999999999943
No 6
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=39.04 E-value=4.3 Score=28.26 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHH------HhCCcHHH--HHHHhhccCCCCHHHHHH
Q psy13512 72 YDATLASVR------ENFPQYVE--EIEGTADGAKVPFHKLFL 106 (170)
Q Consensus 72 ~~~~l~~l~------~~~P~y~E--Em~GIAdGAgv~fedI~l 106 (170)
..++...+. ...|+++. =++=||.|||++..||-.
T Consensus 80 lk~~~~Ii~SMT~~Er~~P~il~~SR~~RIA~GSG~~~~eV~~ 122 (138)
T d1qzxa2 80 IRRWLAALNSMTYKELENPNIIDKSRMRRIAEGSGLEVEEVRE 122 (138)
T ss_dssp HHHHTHHHHSCBHHHHHCGGGCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHccHHHHcCccccchHHHHHHhccCCCCHHHHHH
Confidence 455555554 45677633 478899999999999933
No 7
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=36.90 E-value=37 Score=22.57 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=26.2
Q ss_pred CCcCChHHHHHHHHHHHHHHHhCCcHHHHHHH
Q psy13512 61 PLYETDAGRRVYDATLASVRENFPQYVEEIEG 92 (170)
Q Consensus 61 ~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~G 92 (170)
.....+..+++-..++..++...|+++++|.-
T Consensus 75 D~ipv~~I~~fe~~ll~~l~~~~~~il~~I~~ 106 (129)
T d1fx0a1 75 DSLELDQVRKYLVELRTYVKTNKPEFQEIISS 106 (129)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33456777888899999999999999998863
No 8
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=35.63 E-value=50 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=26.0
Q ss_pred cCChHHHHHHHHHHHHHHHhCCcHHHHHH
Q psy13512 63 YETDAGRRVYDATLASVRENFPQYVEEIE 91 (170)
Q Consensus 63 ~~~~~~~~~~~~~l~~l~~~~P~y~EEm~ 91 (170)
..-+..+++-..++..++...|+++++|+
T Consensus 77 Ipv~~I~~fe~~ll~~l~~~~~~~l~~I~ 105 (131)
T d1skyb1 77 IPVEDVRRFEKEFYLWLDQNGQHLLEHIR 105 (131)
T ss_dssp SCGGGHHHHHHHHHHHHHHGGGGTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45678899999999999999999999996
No 9
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=33.47 E-value=11 Score=28.33 Aligned_cols=62 Identities=11% Similarity=0.234 Sum_probs=41.5
Q ss_pred eeccCCCcch-HHHHHhHHHHHHHHHHhhhhhhhhcCCCc-----CChHHHHHHHHHHHHHHHhCCcH
Q psy13512 25 EGTADGAKVP-FHKGRTFSGIIKSFLETSGPLNDTYLPLY-----ETDAGRRVYDATLASVRENFPQY 86 (170)
Q Consensus 25 ~~~GspyE~G-~q~G~~~~~~I~~~i~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~l~~~~P~y 86 (170)
+-+|+.|..| +.+|..+.++|-+.+++-..-.+.+..+. .-..+--+....++.++..||+.
T Consensus 95 ~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp~~ 162 (243)
T d1tubb1 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDR 162 (243)
T ss_dssp CCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS
T ss_pred cCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcccc
Confidence 4678899999 57999999998888877664333232221 11112234678888889888874
No 10
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.65 E-value=70 Score=21.05 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHHHHHHhCCcHHHHHHH
Q psy13512 63 YETDAGRRVYDATLASVRENFPQYVEEIEG 92 (170)
Q Consensus 63 ~~~~~~~~~~~~~l~~l~~~~P~y~EEm~G 92 (170)
...+..+++-..++..++...|+++++|+-
T Consensus 77 i~v~~I~~fe~~ll~~l~~~~~~~l~~I~~ 106 (131)
T d2jdia1 77 LEPSKITKFENAFLSHVISQHQALLGKIRT 106 (131)
T ss_dssp SCGGGHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 455677888899999999999999999964
No 11
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}
Probab=27.41 E-value=20 Score=25.67 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCcCChHHHHHHHHHHHHHHHhCCcHHHHHHH
Q psy13512 61 PLYETDAGRRVYDATLASVRENFPQYVEEIEG 92 (170)
Q Consensus 61 ~~~~~~~~~~~~~~~l~~l~~~~P~y~EEm~G 92 (170)
....|+.+++++.+=...+..++-++.+|.+|
T Consensus 181 ~~~~T~~gr~~a~~R~~~m~~fl~~~~~E~~g 212 (212)
T d3dtoa1 181 DLMNTETGKQLAKERHVFMEQFIERFLSEWNG 212 (212)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34678999999999999999999999999887
No 12
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=25.81 E-value=62 Score=20.06 Aligned_cols=34 Identities=6% Similarity=0.005 Sum_probs=27.1
Q ss_pred cCChHHHHHHHHHHHHHHHhCCcH-HHHHHHhhcc
Q psy13512 63 YETDAGRRVYDATLASVRENFPQY-VEEIEGTADG 96 (170)
Q Consensus 63 ~~~~~~~~~~~~~l~~l~~~~P~y-~EEm~GIAdG 96 (170)
...+++++++++....|..++.++ .|-.+|||+-
T Consensus 25 p~s~~vq~lv~~H~~~i~~~~~~~s~e~~~~Lg~m 59 (94)
T d1ny9a_ 25 ADSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEM 59 (94)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 466788999999999999877654 6677888864
No 13
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=24.65 E-value=41 Score=24.86 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=40.9
Q ss_pred eeccCCCcchH-HHHHhHHHHHHHHHHhhhhhhhhcCCC-----cCChHHHHHHHHHHHHHHHhCCc
Q psy13512 25 EGTADGAKVPF-HKGRTFSGIIKSFLETSGPLNDTYLPL-----YETDAGRRVYDATLASVRENFPQ 85 (170)
Q Consensus 25 ~~~GspyE~G~-q~G~~~~~~I~~~i~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~l~~~~P~ 85 (170)
.-+|+.|-.|| .+|+++.++|.+.+++-..-.+.+..+ ..--.+--+....+..++..||+
T Consensus 97 ~gsgnNwa~Gy~~~G~~~~d~i~d~irk~~E~cD~l~gf~i~hSl~GGTGSGlgs~l~e~l~d~yp~ 163 (244)
T d2btoa1 97 EGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGE 163 (244)
T ss_dssp SCCTTCHHHHHTSHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHTCS
T ss_pred cccccchhhhcchhHHHHHHHHHHHHHHHHHhCCCccceeEeeeeccccccchhhHHHHHHHHHhcC
Confidence 45678899994 799998888888777666433323222 12233455677888888888885
Done!