RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13512
         (170 letters)



>d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G,
           CbiG {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 121

 Score = 26.4 bits (58), Expect = 1.1
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 94  ADGAKVPFHKLFLLHMDDITPNVVHRKSAVEGTVGCSSVC 133
           AD   V F  +    +++     +   S     VG   V 
Sbjct: 49  ADEFNVRFRLVNEEEINNFMNPCLTPPSKTLIEVGLKGVA 88


>d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 139

 Score = 24.8 bits (54), Expect = 3.9
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 74  ATLASVRENFPQYVEEIEGTADGAKVPFHKLFLLHMDDITPNVVHRKSAVEGTVGCSSVC 133
             LAS+  +  +    +   A   + P H L    + D  P ++   +      GCSSV 
Sbjct: 43  DALASI--DGKRDEPGLRQLATLLERPVHFLAPAVLHDYEPRLLSPSAVALRETGCSSVA 100


>d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 123

 Score = 24.4 bits (53), Expect = 5.0
 Identities = 6/41 (14%), Positives = 12/41 (29%)

Query: 94  ADGAKVPFHKLFLLHMDDITPNVVHRKSAVEGTVGCSSVCC 134
           A G  +    +    ++ +    +    A     G  SV  
Sbjct: 51  AKGLSLSLEIVAQERLEAVAAETMTFSQASLDHSGSPSVSE 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 626,891
Number of extensions: 26760
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 6
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)