BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13513
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RA91|TAF11_PONAB Transcription initiation factor TFIID subunit 11 OS=Pongo abelii
GN=TAF11 PE=2 SV=1
Length = 211
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 69/71 (97%)
Query: 1 MEEEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGI 60
++E+E +KMQ+LVS+F+E+QL+RYEMYRR+AFPKAAIKRLIQ+I+G SVSQNVVIAMSGI
Sbjct: 98 VDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGI 157
Query: 61 AKVFVGEIVEQ 71
+KVFVGE+VE+
Sbjct: 158 SKVFVGEVVEE 168
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 OS=Drosophila
melanogaster GN=Taf11 PE=1 SV=1
Length = 196
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 62/63 (98%)
Query: 9 MQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEI 68
MQVLVSNFTE+QLDRYEMYRR+AFPKAA+KRL+QTI+G SVSQNVVIAMSGIAKVFVGE+
Sbjct: 89 MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEV 148
Query: 69 VEQ 71
VE+
Sbjct: 149 VEE 151
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 OS=Homo sapiens
GN=TAF11 PE=1 SV=1
Length = 211
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 69/71 (97%)
Query: 1 MEEEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGI 60
++E+E +KMQ+LVS+F+E+QL+RYEMYRR+AFPKAAIKRLIQ+I+G SVSQNVVIAMSGI
Sbjct: 98 VDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGI 157
Query: 61 AKVFVGEIVEQ 71
+KVFVGE+VE+
Sbjct: 158 SKVFVGEVVEE 168
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 OS=Rattus
norvegicus GN=Taf11 PE=2 SV=1
Length = 211
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 67/69 (97%)
Query: 3 EEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAK 62
E+E +KMQ+LVS+F+E+QL+RYEMYRR+AFPKAAIKRLIQ+I+G SVSQNVVIAMSGI+K
Sbjct: 100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISK 159
Query: 63 VFVGEIVEQ 71
VFVGE+VE+
Sbjct: 160 VFVGEVVEE 168
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 OS=Mus musculus
GN=Taf11 PE=2 SV=1
Length = 211
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 67/69 (97%)
Query: 3 EEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAK 62
E+E +KMQ+LVS+F+E+QL+RYEMYRR+AFPKAAIKRLIQ+I+G SVSQNVVIAMSGI+K
Sbjct: 100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISK 159
Query: 63 VFVGEIVEQ 71
VFVGE+VE+
Sbjct: 160 VFVGEVVEE 168
>sp|A6NLC8|YE016_HUMAN Putative TAF11-like protein ENSP00000332601 OS=Homo sapiens PE=3
SV=2
Length = 198
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 56/68 (82%)
Query: 4 EEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKV 63
EE ++M L+S +E+QL RYE+ RR+AFPKA I L+++I+G SVS+NV IAM+GIAKV
Sbjct: 89 EEAQRMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLMRSITGRSVSENVAIAMAGIAKV 148
Query: 64 FVGEIVEQ 71
FVGE+VE+
Sbjct: 149 FVGEVVEE 156
>sp|Q54XM9|TAF11_DICDI Transcription initiation factor TFIID subunit 11 OS=Dictyostelium
discoideum GN=taf11 PE=3 SV=1
Length = 450
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 1 MEEEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGI 60
M+ E +M L+ +F+EDQ R+E Y+R++F +A IK+++Q++ V+Q I M GI
Sbjct: 336 MQVRENTQMNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSVLSAPVNQTSAIVMGGI 395
Query: 61 AKVFVGEIVE 70
AKVFVGEIVE
Sbjct: 396 AKVFVGEIVE 405
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%)
Query: 2 EEEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIA 61
E E+ + + L+ +F E+Q+ RYE++RRA K +K+L I SV+ NV I +SG +
Sbjct: 86 EANEKLRTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLANQILNQSVTPNVAIVISGFS 145
Query: 62 KVFVGEIVE 70
KVFVGEIVE
Sbjct: 146 KVFVGEIVE 154
>sp|Q04226|TAF11_YEAST Transcription initiation factor TFIID subunit 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF11 PE=1
SV=1
Length = 346
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 45/66 (68%)
Query: 5 EREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVF 64
+ E+ ++LV+N +DQ +R+E++ R + K +K+L T++ ++S+N+ + + + K++
Sbjct: 120 QDEQFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKKLASTVANQTISENIRVFLQAVGKIY 179
Query: 65 VGEIVE 70
GEI+E
Sbjct: 180 AGEIIE 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,882,202
Number of Sequences: 539616
Number of extensions: 604391
Number of successful extensions: 2233
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2224
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)