Query psy13513
Match_columns 71
No_of_seqs 101 out of 153
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:18:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 100.0 2E-30 6.7E-35 164.1 6.6 56 16-71 1-56 (89)
2 1ku5_A HPHA, archaeal histon; 95.1 0.029 9.8E-07 32.5 4.0 41 30-70 5-45 (70)
3 1b67_A Protein (histone HMFA); 94.8 0.03 1E-06 32.0 3.4 41 30-70 1-41 (68)
4 1n1j_B NF-YC; histone-like PAI 94.6 0.024 8.1E-07 35.0 2.8 47 24-70 12-59 (97)
5 3b0c_T CENP-T, centromere prot 93.5 0.082 2.8E-06 33.5 3.7 41 29-69 5-45 (111)
6 2hue_C Histone H4; mini beta s 92.9 0.098 3.4E-06 31.4 3.2 41 30-70 9-49 (84)
7 1n1j_A NF-YB; histone-like PAI 92.8 0.095 3.2E-06 31.7 3.1 41 30-70 7-49 (93)
8 1tzy_D Histone H4-VI; histone- 92.2 0.12 4E-06 32.2 3.0 40 31-70 29-68 (103)
9 2yfw_B Histone H4, H4; cell cy 92.2 0.12 4.1E-06 32.2 3.1 40 31-70 29-68 (103)
10 3b0c_W CENP-W, centromere prot 91.9 0.17 5.9E-06 29.7 3.4 41 30-70 3-44 (76)
11 4g92_C HAPE; transcription fac 91.1 0.12 4E-06 33.0 2.2 44 27-70 37-81 (119)
12 1id3_B Histone H4; nucleosome 90.7 0.2 7E-06 31.3 3.0 40 31-70 28-67 (102)
13 2byk_B Chrac-14; nucleosome sl 87.7 0.47 1.6E-05 30.6 3.2 40 30-69 8-49 (128)
14 1jfi_A Transcription regulator 84.5 1 3.5E-05 27.6 3.4 42 29-70 9-51 (98)
15 1jfi_B DR1 protein, transcript 84.5 1.6 5.5E-05 30.0 4.7 38 31-68 15-53 (179)
16 3b0b_C CENP-X, centromere prot 80.7 2.7 9.4E-05 25.3 4.2 41 29-69 6-49 (81)
17 1f1e_A Histone fold protein; a 78.0 2 6.7E-05 28.8 3.2 40 31-70 82-121 (154)
18 1taf_B TFIID TBP associated fa 76.0 4.3 0.00015 23.8 4.0 41 30-70 5-45 (70)
19 1f1e_A Histone fold protein; a 75.8 2.1 7.1E-05 28.6 2.9 40 30-69 3-43 (154)
20 4dra_E Centromere protein X; D 75.6 3.6 0.00012 25.1 3.7 40 30-69 11-53 (84)
21 2byk_A Chrac-16; nucleosome sl 64.8 1.5 5.1E-05 28.8 0.2 43 28-70 16-59 (140)
22 1dum_A Magainin 2; antibiotic, 63.1 2.9 0.0001 20.5 1.0 13 58-70 10-22 (26)
23 1nvp_D Transcription initiatio 58.7 2.9 9.9E-05 26.5 0.8 34 24-57 2-35 (108)
24 1nov_D Nodamura virus coat pro 57.1 8.1 0.00028 21.2 2.3 28 35-62 5-34 (44)
25 1f8v_D Mature capsid protein g 53.8 6.6 0.00023 21.2 1.5 27 35-61 5-33 (40)
26 2beq_D E2 glycoprotein; viral 52.1 13 0.00046 20.6 2.7 24 4-27 17-45 (48)
27 2qxf_A Exodeoxyribonuclease I; 51.9 13 0.00046 28.2 3.6 32 14-45 417-448 (482)
28 1mfq_C SRP54, signal recogniti 50.2 35 0.0012 22.1 4.9 25 3-27 57-84 (129)
29 1h3o_B Transcription initiatio 49.8 34 0.0012 20.2 4.5 40 31-70 5-45 (76)
30 2nqb_C Histone H2A; nucleosome 49.6 20 0.00068 22.8 3.6 40 31-70 23-63 (123)
31 3nrw_A Phage integrase/site-sp 48.2 37 0.0013 19.4 4.7 31 13-43 51-82 (117)
32 1tzy_A Histone H2A-IV; histone 47.0 23 0.00079 22.7 3.7 40 31-70 25-65 (129)
33 2z2q_B Coat protein gamma; wil 45.4 16 0.00056 20.0 2.3 27 35-61 5-33 (44)
34 1pav_A Hypothetical protein TA 43.6 8.7 0.0003 21.7 1.1 27 44-70 11-37 (78)
35 1nh2_D Transcription initiatio 42.9 6.9 0.00024 25.3 0.6 34 24-57 6-39 (121)
36 2f8n_K Histone H2A type 1; nuc 42.7 26 0.0009 23.2 3.5 40 31-70 44-84 (149)
37 2f8n_G Core histone macro-H2A. 42.3 34 0.0012 21.6 3.9 40 31-70 22-62 (120)
38 2o8x_A Probable RNA polymerase 42.1 36 0.0012 17.6 4.7 40 1-40 1-40 (70)
39 1ojh_A NBLA; degradation prote 41.7 28 0.00095 20.3 3.1 43 7-49 16-60 (65)
40 2y69_E Cytochrome C oxidase su 39.4 23 0.00078 23.9 2.8 37 19-55 53-91 (152)
41 3v9r_B MHF2, uncharacterized p 39.2 20 0.00067 22.2 2.3 38 32-69 2-42 (88)
42 2ovj_A Mgcracgap, RAC GTPase-a 38.5 30 0.001 22.6 3.2 44 25-69 37-85 (201)
43 1jdq_A TM006 protein, hypothet 37.6 13 0.00046 22.4 1.3 27 44-70 31-57 (98)
44 1id3_C Histone H2A.1; nucleoso 36.8 29 0.001 22.2 2.9 40 31-70 25-65 (131)
45 1dul_A Signal recognition part 36.2 18 0.0006 21.1 1.6 35 3-42 9-43 (69)
46 2bf9_A Pancreatic hormone; tur 35.8 49 0.0017 17.3 3.3 24 15-47 11-34 (36)
47 3lvj_C Sulfurtransferase TUSA; 34.3 14 0.00049 21.2 1.0 26 45-70 16-41 (82)
48 2key_A Putative phage integras 34.1 61 0.0021 17.8 4.3 30 13-42 49-80 (112)
49 1wh7_A ZF-HD homeobox family p 34.1 66 0.0023 18.4 4.0 33 14-46 22-59 (80)
50 3fk2_A Glucocorticoid receptor 32.6 58 0.002 22.0 4.0 44 25-69 88-136 (246)
51 2ee4_A RHO GTPase activating p 32.5 60 0.002 21.1 4.0 44 25-69 47-95 (209)
52 1qb2_A SRP54, human signal rec 32.4 91 0.0031 19.3 5.5 26 3-28 44-72 (109)
53 1f7c_A Rhogap protein; GTPase 31.6 56 0.0019 21.8 3.8 44 25-69 57-109 (231)
54 1l6x_B Minimized B-domain of p 30.3 31 0.001 17.9 1.8 15 11-25 13-27 (34)
55 3kuq_A RHO GTPase-activating p 29.3 53 0.0018 21.9 3.4 44 25-69 56-103 (228)
56 1bba_A Bovine pancreatic polyp 29.0 43 0.0015 17.5 2.3 24 15-47 11-34 (36)
57 1f66_C Histone H2A.Z; nucleoso 28.5 64 0.0022 20.5 3.5 40 31-70 27-68 (128)
58 3iug_A RHO/CDC42/RAC GTPase-ac 28.3 68 0.0023 21.2 3.7 44 25-69 56-106 (229)
59 3fia_A Intersectin-1; EH 1 dom 27.2 1.2E+02 0.004 18.9 5.5 60 2-63 28-98 (121)
60 3msx_B RHO GTPase-activating p 26.6 52 0.0018 21.2 2.9 44 25-69 46-92 (201)
61 3byi_A RHO GTPase activating p 26.4 67 0.0023 21.0 3.4 44 25-69 55-104 (214)
62 2khq_A Integrase; all-alpha, s 26.1 85 0.0029 17.0 3.7 28 13-40 44-71 (110)
63 1qr0_A 4'-phosphopantetheinyl 26.0 71 0.0024 21.2 3.5 40 8-47 16-61 (228)
64 3hz7_A Uncharacterized protein 26.0 30 0.001 20.2 1.5 27 44-70 6-33 (87)
65 2kiw_A INT protein; alpha, str 25.9 87 0.003 17.0 4.6 29 13-41 41-69 (111)
66 2jns_A Bromodomain-containing 25.6 50 0.0017 19.5 2.4 23 1-23 18-40 (90)
67 1rxq_A YFIT; nickel-binding, h 24.9 43 0.0015 20.2 2.1 37 4-45 33-69 (178)
68 3kp1_E D-ornithine aminomutase 24.3 29 0.001 22.5 1.3 22 3-24 4-25 (121)
69 1je3_A EC005, hypothetical 8.6 24.1 15 0.00051 22.2 -0.2 27 44-70 32-58 (97)
70 2jss_A Chimera of histone H2B. 23.7 91 0.0031 20.8 3.7 40 31-70 105-146 (192)
71 3syn_E ATP-binding protein YLX 23.2 18 0.00063 17.1 0.1 7 20-26 2-8 (23)
72 1w1n_A Phosphatidylinositol 3- 23.2 62 0.0021 16.1 2.2 12 34-45 6-17 (33)
73 1zda_A Mini protein A domain, 22.4 24 0.00082 18.7 0.5 15 11-25 18-32 (38)
74 2p1a_A Hypothetical protein; s 21.0 99 0.0034 17.8 3.1 37 5-46 14-50 (154)
75 2rd9_A BH0186 protein; structu 20.9 52 0.0018 20.6 2.0 38 4-46 33-70 (193)
76 2lmt_A Calmodulin-related prot 20.8 41 0.0014 19.8 1.4 31 13-43 1-38 (148)
77 3nau_A Zinc fingers and homeob 20.5 1.1E+02 0.0036 17.6 3.1 28 4-32 32-59 (66)
78 1hq1_A Signal recognition part 20.4 39 0.0013 21.0 1.2 42 3-50 43-84 (105)
79 1owf_B IHF-beta, integration H 20.1 1.4E+02 0.0046 17.1 4.0 29 17-45 2-30 (94)
80 2r18_A Capsid assembly protein 20.1 1.3E+02 0.0043 19.9 3.7 28 35-65 83-114 (139)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=99.96 E-value=2e-30 Score=164.09 Aligned_cols=56 Identities=82% Similarity=1.232 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhccC
Q psy13513 16 FTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71 (71)
Q Consensus 16 ~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVEe 71 (71)
||+||++|||.||||+|+|++||||+++++|++||+|++|+|+|+||+|||||||+
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~ 56 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEE 56 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999984
No 2
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=95.13 E-value=0.029 Score=32.47 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=37.0
Q ss_pred cCCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
+.||++.|+||+...-...+++.+..++..+++.|+-+|.+
T Consensus 5 ~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~ 45 (70)
T 1ku5_A 5 GELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAK 45 (70)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999998866789999999999999999988764
No 3
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=94.79 E-value=0.03 Score=31.99 Aligned_cols=41 Identities=27% Similarity=0.398 Sum_probs=36.0
Q ss_pred cCCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
+.||++.|+||+...-+..++.....+++..+..|+-+|.+
T Consensus 1 ~~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~ 41 (68)
T 1b67_A 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIAS 41 (68)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999955679999999999999999988765
No 4
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=94.63 E-value=0.024 Score=34.99 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=34.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHhC-CCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 24 YEMYRRAAFPKAAIKRLIQTISG-GSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 24 ye~fRRs~f~K~~ikkli~~~~~-~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
-..|+...||-+.|||+|+.--. ..|++...++++..+-+|+.+|.+
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~ 59 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTL 59 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999997644 469999999999999999999876
No 5
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=93.48 E-value=0.082 Score=33.54 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=33.5
Q ss_pred hcCCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhc
Q psy13513 29 RAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 29 Rs~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiV 69 (71)
-..||++.|+||+....+..|+..+.-++..+.+.|+-.+.
T Consensus 5 d~~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~ 45 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQIS 45 (111)
T ss_dssp -----CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999998889999999999999999987764
No 6
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=92.88 E-value=0.098 Score=31.42 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=35.9
Q ss_pred cCCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
..+|+++|++|+.+.--..+|..+.-.++.+.+.|+-+|+.
T Consensus 9 ~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~ 49 (84)
T 2hue_C 9 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIR 49 (84)
T ss_dssp CSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999998744579999999999999999998874
No 7
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=92.76 E-value=0.095 Score=31.74 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=35.8
Q ss_pred cCCChHHHHHHHHHHhC--CCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 30 AAFPKAAIKRLIQTISG--GSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~--~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
..||++.|+|||...+. ..++.....+++-.+..|+-+|.+
T Consensus 7 ~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~ 49 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITS 49 (93)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999964 679999999999999999988754
No 8
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=92.18 E-value=0.12 Score=32.18 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||++.|++|+.+.--..++..+...++.+.+.|+-+|++
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~ 68 (103)
T 1tzy_D 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIR 68 (103)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999998755579999999999999999999876
No 9
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=92.18 E-value=0.12 Score=32.18 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||++.|++|+.+.--..++..+...++.+.+.|+-+|++
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~ 68 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIR 68 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999998755579999999999999999999876
No 10
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=91.87 E-value=0.17 Score=29.68 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=33.4
Q ss_pred cCCChHHHHHHHHHHh-CCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 30 AAFPKAAIKRLIQTIS-GGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 30 s~f~K~~ikkli~~~~-~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
..||++.|+|+|.+++ +..++.....+|.-.+-.|+-.|..
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~ 44 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAE 44 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999775 4578888888888888888877643
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=91.10 E-value=0.12 Score=33.04 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=37.0
Q ss_pred HHhcCCChHHHHHHHHHHh-CCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 27 YRRAAFPKAAIKRLIQTIS-GGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 27 fRRs~f~K~~ikkli~~~~-~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
|+-..||-+.|||+|..-- ...|+....++++..+-+||.+|.+
T Consensus 37 ~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~ 81 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTM 81 (119)
T ss_dssp SSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999998543 2468888899999999999999875
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=90.70 E-value=0.2 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.+|+++|++|+.+.--..+|+.+.-+++.+.+.|+-+|+.
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~ 67 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIR 67 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999998744569999999999999999998874
No 13
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=87.68 E-value=0.47 Score=30.64 Aligned_cols=40 Identities=33% Similarity=0.383 Sum_probs=32.9
Q ss_pred cCCChHHHHHHHHHHh--CCCCChhHHHHHHHhhHhHhhhhc
Q psy13513 30 AAFPKAAIKRLIQTIS--GGSVSQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 30 s~f~K~~ikkli~~~~--~~sv~~nv~i~v~g~aKvFVGEiV 69 (71)
..||++.|+|||...+ +..|+.....+++=.+-+||-.|.
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt 49 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVT 49 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999887 568999999999999999998774
No 14
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=84.52 E-value=1 Score=27.58 Aligned_cols=42 Identities=31% Similarity=0.534 Sum_probs=35.6
Q ss_pred hcCCChHHHHHHHHHHhC-CCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 29 RAAFPKAAIKRLIQTISG-GSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 29 Rs~f~K~~ikkli~~~~~-~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
...||=+-|||+++.--. ..|++...+.++...-+|+-||.+
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~ 51 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLK 51 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 467999999999996433 579999999999999999999876
No 15
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=84.52 E-value=1.6 Score=29.97 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHh-CCCCChhHHHHHHHhhHhHhhhh
Q psy13513 31 AFPKAAIKRLIQTIS-GGSVSQNVVIAMSGIAKVFVGEI 68 (71)
Q Consensus 31 ~f~K~~ikkli~~~~-~~sv~~nv~i~v~g~aKvFVGEi 68 (71)
.||++.|.|||...+ +..|+.....++.=.+-.||-.|
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~L 53 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLI 53 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHH
Confidence 599999999999998 57899999999988888998766
No 16
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=80.72 E-value=2.7 Score=25.34 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=35.3
Q ss_pred hcCCChHHHHHHHHHHhC---CCCChhHHHHHHHhhHhHhhhhc
Q psy13513 29 RAAFPKAAIKRLIQTISG---GSVSQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 29 Rs~f~K~~ikkli~~~~~---~sv~~nv~i~v~g~aKvFVGEiV 69 (71)
...||+..|.+|+..... ..+++...-+++-+-++||-|-|
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv 49 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAA 49 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998664 46889999999999999998865
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=77.96 E-value=2 Score=28.77 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||++.|+||+...-+..||......++.+.+.|+-+|..
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~ 121 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGE 121 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999866789999999999999999988764
No 18
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=75.99 E-value=4.3 Score=23.82 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=34.7
Q ss_pred cCCChHHHHHHHHHHhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
|.||...|+++..++==..+|+.++-+++--.-..+.||+.
T Consensus 5 s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~q 45 (70)
T 1taf_B 5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQ 45 (70)
T ss_dssp CCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999997666699999999998888777777764
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=75.78 E-value=2.1 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred cCCChHHHHHHHHHHhCC-CCChhHHHHHHHhhHhHhhhhc
Q psy13513 30 AAFPKAAIKRLIQTISGG-SVSQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~~-sv~~nv~i~v~g~aKvFVGEiV 69 (71)
+.||++.|+||+...+|. .|+....-+++...+.|+-+|.
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~ 43 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVA 43 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999765 7999999999999999987764
No 20
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=75.60 E-value=3.6 Score=25.10 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHHHhC---CCCChhHHHHHHHhhHhHhhhhc
Q psy13513 30 AAFPKAAIKRLIQTISG---GSVSQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 30 s~f~K~~ikkli~~~~~---~sv~~nv~i~v~g~aKvFVGEiV 69 (71)
..||+..|.||+..... ..++.....+++-+-++||-|-|
T Consensus 11 ~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv 53 (84)
T 4dra_E 11 SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAA 53 (84)
T ss_dssp CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 47999999999996663 57899999999999999998865
No 21
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=64.84 E-value=1.5 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.402 Sum_probs=24.5
Q ss_pred HhcCCChHHHHHHHHHHhC-CCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 28 RRAAFPKAAIKRLIQTISG-GSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 28 RRs~f~K~~ikkli~~~~~-~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
....||-+.|||||+.--. ..|++...++++--+-+||-+|++
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~ 59 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAG 59 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999986532 468889999999999999999875
No 22
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=63.07 E-value=2.9 Score=20.46 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.4
Q ss_pred HHhhHhHhhhhcc
Q psy13513 58 SGIAKVFVGEIVE 70 (71)
Q Consensus 58 ~g~aKvFVGEiVE 70 (71)
.-++|-|||||..
T Consensus 10 kkfgkawvgeimn 22 (26)
T 1dum_A 10 KKFGKAWVGEIMN 22 (26)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHh
Confidence 4588999999863
No 23
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=58.74 E-value=2.9 Score=26.55 Aligned_cols=34 Identities=15% Similarity=0.414 Sum_probs=25.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHhCCCCChhHHHHH
Q psy13513 24 YEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAM 57 (71)
Q Consensus 24 ye~fRRs~f~K~~ikkli~~~~~~sv~~nv~i~v 57 (71)
|+.||+|.+-.+=..-|-.-+..+.+++.++.-|
T Consensus 2 y~lYR~stiG~aL~dtLdEli~~~~Isp~la~kV 35 (108)
T 1nvp_D 2 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQV 35 (108)
T ss_dssp CGGGGSSHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred hhHHhhChHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8899999987776666666666778888776544
No 24
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=57.09 E-value=8.1 Score=21.21 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCC--CCChhHHHHHHHhhH
Q psy13513 35 AAIKRLIQTISGG--SVSQNVVIAMSGIAK 62 (71)
Q Consensus 35 ~~ikkli~~~~~~--sv~~nv~i~v~g~aK 62 (71)
..+|+++++.++. .||-+|-++-+|+.-
T Consensus 5 ErVk~ilks~l~~aS~iPGPVG~~asGi~g 34 (44)
T 1nov_D 5 ERVRSILKSGLNFASTIPGPVGVAATGIKG 34 (44)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHhHHH
Confidence 3589999998874 788888877777653
No 25
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=53.83 E-value=6.6 Score=21.17 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCC--CCChhHHHHHHHhh
Q psy13513 35 AAIKRLIQTISGG--SVSQNVVIAMSGIA 61 (71)
Q Consensus 35 ~~ikkli~~~~~~--sv~~nv~i~v~g~a 61 (71)
..+|+++++.++. .||-++-++-+|+.
T Consensus 5 ErVk~ilks~l~~aS~iPGPVG~~asGi~ 33 (40)
T 1f8v_D 5 EGVLRVLNQISGTLSVIPGPVGTISAGVH 33 (40)
T ss_dssp HHHHHHHHHTCCC---------------C
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHhHH
Confidence 3589999999975 68888888877764
No 26
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=52.14 E-value=13 Score=20.58 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCC-----HHHHHHHHHH
Q psy13513 4 EEREKMQVLVSNFT-----EDQLDRYEMY 27 (71)
Q Consensus 4 ee~~~~~~L~~~~~-----~eQ~~Rye~f 27 (71)
.|...++..+++++ =++++|||.|
T Consensus 17 ~Ei~~Lq~~I~~LN~slIDLe~Ln~~E~y 45 (48)
T 2beq_D 17 KEIDRLNEVAKNLNESLIDLQELGKYEQY 45 (48)
T ss_dssp HHHHHHHHHHTTGGGGEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHccHHHhchhhee
Confidence 35556677777764 5899999998
No 27
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=51.89 E-value=13 Score=28.24 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=27.4
Q ss_pred hCCCHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q psy13513 14 SNFTEDQLDRYEMYRRAAFPKAAIKRLIQTIS 45 (71)
Q Consensus 14 ~~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~ 45 (71)
+.||+++..|+..||+..|..+++....+.+-
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~~ 448 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADELQ 448 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 56899999999999999999887887776554
No 28
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=50.17 E-value=35 Score=22.08 Aligned_cols=25 Identities=12% Similarity=0.399 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCCHHHHHH---HHHH
Q psy13513 3 EEEREKMQVLVSNFTEDQLDR---YEMY 27 (71)
Q Consensus 3 eee~~~~~~L~~~~~~eQ~~R---ye~f 27 (71)
+.+..++..++++||+++++- -+.+
T Consensus 57 e~~lkr~eaII~SMT~~Er~n~~~P~ii 84 (129)
T 1mfq_C 57 MARLKKLMTIMDSMNDQELDSTDGAKVF 84 (129)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCTTHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHhcCCCcccc
Confidence 556677788999999999987 7776
No 29
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=49.80 E-value=34 Score=20.21 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHhCC-CCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTISGG-SVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~~~-sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
-|+|..+..|++++-+. .+.+.+-=++.-+|=-||-.+++
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~ 45 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVT 45 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999865 56678888888888888877764
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=49.60 E-value=20 Score=22.79 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHH-hCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTI-SGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~-~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||-+-|.|++..- ....|+....+.++++--.+.-||.|
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIle 63 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 63 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 48999999999986 66789999999999999999999876
No 31
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=48.17 E-value=37 Score=19.43 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=22.1
Q ss_pred hhCCCHHHHHHHHHHHhc-CCChHHHHHHHHH
Q psy13513 13 VSNFTEDQLDRYEMYRRA-AFPKAAIKRLIQT 43 (71)
Q Consensus 13 ~~~~~~eQ~~Rye~fRRs-~f~K~~ikkli~~ 43 (71)
+..++++...+|-.|.+. ++..+.|++.+..
T Consensus 51 l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~ 82 (117)
T 3nrw_A 51 MRELTGWKLDEYETFRRGSDVSPATLNGEMQT 82 (117)
T ss_dssp GGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788888888888764 5777777766543
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=47.04 E-value=23 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHH-hCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTI-SGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~-~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||-+-|.|++..- ....|+....+.++++--.|..||.|
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIle 65 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILE 65 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 48999999999985 66789999999999999999999876
No 33
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=45.42 E-value=16 Score=19.95 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCC--CCChhHHHHHHHhh
Q psy13513 35 AAIKRLIQTISGG--SVSQNVVIAMSGIA 61 (71)
Q Consensus 35 ~~ikkli~~~~~~--sv~~nv~i~v~g~a 61 (71)
..+|+++++.++. .+|-+|-.+-+|+.
T Consensus 5 ErVk~ilks~l~a~S~iPGPVG~~asGi~ 33 (44)
T 2z2q_B 5 ERVKSIIKSSLAAASNIPGPIGVAASGIS 33 (44)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHhHH
Confidence 3589999998875 68888877666654
No 34
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=43.61 E-value=8.7 Score=21.69 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.0
Q ss_pred HhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 44 ISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 44 ~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
+.|.++|.|+..+-..+.++=.|+.++
T Consensus 11 ~rGl~CP~Pvl~~k~al~~l~~G~~L~ 37 (78)
T 1pav_A 11 ARGSYCPGPLMELIKAYKQAKVGEVIS 37 (78)
T ss_dssp BSSCSSCTTHHHHHHHHTTSCTTCCEE
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCEEE
Confidence 347899999999999999998888764
No 35
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=42.90 E-value=6.9 Score=25.34 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=25.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHhCCCCChhHHHHH
Q psy13513 24 YEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAM 57 (71)
Q Consensus 24 ye~fRRs~f~K~~ikkli~~~~~~sv~~nv~i~v 57 (71)
|+.||+|.+-.+=..-|-.-+..+.+++.++.-|
T Consensus 6 y~lYR~StiG~aL~dtLdEli~~~~Isp~la~kV 39 (121)
T 1nh2_D 6 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRV 39 (121)
T ss_dssp CCGGGGSHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8999999987776666666666778887766543
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=42.66 E-value=26 Score=23.17 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHH-hCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTI-SGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~-~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||=+-|.|++..- ..+.|+....+.++++--.+..||.|
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILe 84 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILE 84 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHH
Confidence 37889999999986 56789999999999999999999876
No 37
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=42.25 E-value=34 Score=21.59 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHh-CCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTIS-GGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~-~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||=+-|.|++..-- .+.|+....+.++++--.+..||.|
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIle 62 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILE 62 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHH
Confidence 488899999998764 6789999999999999999999876
No 38
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.14 E-value=36 Score=17.59 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHH
Q psy13513 1 MEEEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRL 40 (71)
Q Consensus 1 ~~eee~~~~~~L~~~~~~eQ~~Rye~fRRs~f~K~~ikkl 40 (71)
|+.++.+.+.-.++.|++.|.+=+..+.-..++-..|-..
T Consensus 1 ~~~e~~~~l~~~l~~L~~~~r~il~l~~~~g~s~~eIA~~ 40 (70)
T 2o8x_A 1 MGFEDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAV 40 (70)
T ss_dssp CCHHHHHHHHTTTTSSCHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 5678888888899999999988877655556655444443
No 39
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=41.67 E-value=28 Score=20.32 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCHHHHHHH--HHHHhcCCChHHHHHHHHHHhCCCC
Q psy13513 7 EKMQVLVSNFTEDQLDRY--EMYRRAAFPKAAIKRLIQTISGGSV 49 (71)
Q Consensus 7 ~~~~~L~~~~~~eQ~~Ry--e~fRRs~f~K~~ikkli~~~~~~sv 49 (71)
+.++--+.+||.||...| +.||..=...+.+|.++.+-.|-..
T Consensus 16 ~~~~~qv~~ls~EQaqe~Lve~~rQmMikeN~~k~liK~~w~l~~ 60 (65)
T 1ojh_A 16 RSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWGLDS 60 (65)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 445667899999999998 8899999999999999988766533
No 40
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=39.40 E-value=23 Score=23.90 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=25.6
Q ss_pred HHHHHHHHH-HhcCCChHHHHHHHHHHhCCC-CChhHHH
Q psy13513 19 DQLDRYEMY-RRAAFPKAAIKRLIQTISGGS-VSQNVVI 55 (71)
Q Consensus 19 eQ~~Rye~f-RRs~f~K~~ikkli~~~~~~s-v~~nv~i 55 (71)
|=-.||+.| -+..+.-=-++|-+|...|.. ||++-+|
T Consensus 53 eFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii 91 (152)
T 2y69_E 53 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKII 91 (152)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHH
Confidence 334689986 345555556999999999984 6655444
No 41
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=39.21 E-value=20 Score=22.19 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHh---CCCCChhHHHHHHHhhHhHhhhhc
Q psy13513 32 FPKAAIKRLIQTIS---GGSVSQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 32 f~K~~ikkli~~~~---~~sv~~nv~i~v~g~aKvFVGEiV 69 (71)
+|+..|-||+.... +..++.....+++-+-++||-|-|
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv 42 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAV 42 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHH
Confidence 68888999988544 346888888899999999998865
No 42
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=38.54 E-value=30 Score=22.63 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHhcCCChHHHHHHHHHHh-CCCCC---h-hHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTIS-GGSVS---Q-NVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~-~~sv~---~-nv~i~v~g~aKvFVGEiV 69 (71)
.-||.|+ ++..|++|...+- |..++ + .=+-++||+-|.|.-|+=
T Consensus 37 GIfR~sG-~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLp 85 (201)
T 2ovj_A 37 GLYRISG-CDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLK 85 (201)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSS
T ss_pred ceeeeCC-cHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCC
Confidence 4588887 5778999888775 43333 1 135678999999998873
No 43
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=37.60 E-value=13 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.4
Q ss_pred HhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 44 ISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 44 ~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
+.|.++|.|+..+-.++.++=.|++++
T Consensus 31 ~rGl~CP~Pvl~tkkaL~~l~~Ge~L~ 57 (98)
T 1jdq_A 31 VRGEVCPVPDVETKRALQNMKPGEILE 57 (98)
T ss_dssp CSSCCSSHHHHHHHHHHHTCCTTCEEE
T ss_pred CCCCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 458899999999999999999998764
No 44
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=36.77 E-value=29 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHH-hCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTI-SGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~-~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||-+-|.|++..- ....|+....+.++++--.|.-||.|
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIle 65 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILE 65 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 48999999999975 56789999999999999999988876
No 45
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=36.18 E-value=18 Score=21.09 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHH
Q psy13513 3 EEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQ 42 (71)
Q Consensus 3 eee~~~~~~L~~~~~~eQ~~Rye~fRRs~f~K~~ikkli~ 42 (71)
+.+..++..++++||+++++--+. |+.+-.+||..
T Consensus 9 e~~lkr~~aII~SMT~~Er~nP~i-----i~~SR~~RIA~ 43 (69)
T 1dul_A 9 QKVLVRMEAIINSMTMKERAKPEI-----IKGSRKRRIAA 43 (69)
T ss_dssp CCHHHHHHHHHHTSCHHHHHCGGG-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHhCccc-----cCHHHHHHHHc
Confidence 445678889999999999985443 44455555554
No 46
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=35.82 E-value=49 Score=17.28 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHHHhCC
Q psy13513 15 NFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGG 47 (71)
Q Consensus 15 ~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~~~ 47 (71)
+=++||+.+|- +++++.||-++-|
T Consensus 11 dA~~Eela~Y~---------~~LrhYiNlvTRq 34 (36)
T 2bf9_A 11 DAPVEDLIRFY---------NDLQQYLNVVTRH 34 (36)
T ss_dssp TSCHHHHHHHH---------HHHHHHHHHHTTC
T ss_pred CCCHHHHHHHH---------HHHHHHHHHHhcc
Confidence 44789999995 5688888877755
No 47
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=34.27 E-value=14 Score=21.22 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.0
Q ss_pred hCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 45 SGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 45 ~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.|.++|.|+..+-.++.++=.|+.++
T Consensus 16 rGl~CP~Pvl~~kkal~~l~~G~~l~ 41 (82)
T 3lvj_C 16 LGLRCPEPVMMVRKTVRNMQPGETLL 41 (82)
T ss_dssp TTCCTTHHHHHHHHHHHTSCTTCEEE
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 47899999999999999988888654
No 48
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=34.15 E-value=61 Score=17.82 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=20.6
Q ss_pred hhCCCHHHHHHHHHHHh--cCCChHHHHHHHH
Q psy13513 13 VSNFTEDQLDRYEMYRR--AAFPKAAIKRLIQ 42 (71)
Q Consensus 13 ~~~~~~eQ~~Rye~fRR--s~f~K~~ikkli~ 42 (71)
++.++++....|..|-+ .++..+.|++.+.
T Consensus 49 l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~ 80 (112)
T 2key_A 49 FHELTEDFLRDYLIYMKKTLCNADSTAQRNLS 80 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHccCcchhhHHHHHH
Confidence 45678888888877765 3566677766554
No 49
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=34.11 E-value=66 Score=18.45 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=23.6
Q ss_pred hCCCHHHHHHHHHHHh-----cCCChHHHHHHHHHHhC
Q psy13513 14 SNFTEDQLDRYEMYRR-----AAFPKAAIKRLIQTISG 46 (71)
Q Consensus 14 ~~~~~eQ~~Rye~fRR-----s~f~K~~ikkli~~~~~ 46 (71)
..|+++|++.-|.|.. ...|....+.-+..-+|
T Consensus 22 t~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lg 59 (80)
T 1wh7_A 22 TKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETG 59 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhC
Confidence 3689999999999988 77776666655444443
No 50
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=32.63 E-value=58 Score=21.98 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=30.0
Q ss_pred HHHHhcCCChHHHHHHHHHHh-CCCCC--h--hHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTIS-GGSVS--Q--NVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~-~~sv~--~--nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++ ++..|++|...+- |..+. . .-+-++||+-|.|.-||=
T Consensus 88 GIFR~sG-~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLReLP 136 (246)
T 3fk2_A 88 GIYRVSG-NKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELP 136 (246)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHHSS
T ss_pred CeeEeCC-cHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhCC
Confidence 4688777 5778888887765 33322 1 125578999999998873
No 51
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=32.54 E-value=60 Score=21.13 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=29.5
Q ss_pred HHHHhcCCChHHHHHHHHHHh-CCCCCh----hHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTIS-GGSVSQ----NVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~-~~sv~~----nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++ ++..|++|...+- |..+.- .-+-++||+-|.|.-|+=
T Consensus 47 GIfR~~g-~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreLP 95 (209)
T 2ee4_A 47 GLYRVSG-NKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLP 95 (209)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHSS
T ss_pred CccccCC-CHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhCC
Confidence 4588887 4677888777654 333321 124578999999998874
No 52
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=32.45 E-value=91 Score=19.34 Aligned_cols=26 Identities=12% Similarity=0.381 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhCCCHHHHHH---HHHHH
Q psy13513 3 EEEREKMQVLVSNFTEDQLDR---YEMYR 28 (71)
Q Consensus 3 eee~~~~~~L~~~~~~eQ~~R---ye~fR 28 (71)
+.+..++..++++||+++++. -+.+.
T Consensus 44 ~~~lkr~~aII~SMT~~Er~~~~~P~ii~ 72 (109)
T 1qb2_A 44 MARLKKLMTIMDSMNDQELDSTDGAKVFS 72 (109)
T ss_dssp HHHHHHHHHHHTTSCHHHHHSTTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHhcCCCccccc
Confidence 456677789999999999997 77774
No 53
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=31.63 E-value=56 Score=21.77 Aligned_cols=44 Identities=9% Similarity=0.277 Sum_probs=28.3
Q ss_pred HHHHhcCCChHHHHHHHHHHhCC----CCC-----hhHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTISGG----SVS-----QNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~~~----sv~-----~nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++- ++.|++|.+...+. .+. +.=+-++||+-|.|.-||=
T Consensus 57 GIfR~sG~-~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLP 109 (231)
T 1f7c_A 57 GLYRIVGV-NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLP 109 (231)
T ss_dssp TTTTSCCC-HHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSS
T ss_pred CeeeeCCc-HHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCC
Confidence 45777764 66788888755432 121 1225678999999998873
No 54
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=30.25 E-value=31 Score=17.91 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.3
Q ss_pred HHhhCCCHHHHHHHH
Q psy13513 11 VLVSNFTEDQLDRYE 25 (71)
Q Consensus 11 ~L~~~~~~eQ~~Rye 25 (71)
+=+.++|+||.+-|-
T Consensus 13 Lh~~nLtEeQrn~yI 27 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKI 27 (34)
T ss_dssp HHCTTCCHHHHHHHH
T ss_pred HcCCCCCHHHHHhHH
Confidence 457899999998874
No 55
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=29.31 E-value=53 Score=21.85 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHHhcCCChHHHHHHHHHHh-C-CCCC--hhHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTIS-G-GSVS--QNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~-~-~sv~--~nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++ ++..|++|....- + ..+. +.-+-++||+-|.|.-||=
T Consensus 56 GIfR~sG-~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~fLReLP 103 (228)
T 3kuq_A 56 GLFRKSG-VKSRIQALRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLP 103 (228)
T ss_dssp TTTTSCC-CHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHHHHHHHHSS
T ss_pred CeeecCC-CHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHHHHHHHhCC
Confidence 4688776 5788999888763 2 2222 2234567999999998864
No 56
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=28.98 E-value=43 Score=17.50 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHHHhCC
Q psy13513 15 NFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGG 47 (71)
Q Consensus 15 ~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~~~ 47 (71)
+=++||+.+|- +++++.||-++-|
T Consensus 11 dA~pEela~Y~---------~~Lr~YiNlvTRq 34 (36)
T 1bba_A 11 NATPEQMAQYA---------AELRRYINMLTRP 34 (36)
T ss_dssp CSSTTHHHHHH---------HHHHHHHHHHCCC
T ss_pred CCCHHHHHHHH---------HHHHHHHHHhhcc
Confidence 34789999995 5678888877754
No 57
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=28.54 E-value=64 Score=20.54 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHh-C-CCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTIS-G-GSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~-~-~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||=+-|.|++..-. . +.|+....+.++++--.|..||+|
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIle 68 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLE 68 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHH
Confidence 489999999998765 3 479999999999999999999876
No 58
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=28.31 E-value=68 Score=21.23 Aligned_cols=44 Identities=16% Similarity=0.381 Sum_probs=29.6
Q ss_pred HHHHhcCCChHHHHHHHHHHhCCC---CCh----hHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTISGGS---VSQ----NVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~~~s---v~~----nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++ ++..|++|.+.+-... .+. .=+-++||+-|.|.-||=
T Consensus 56 GIfR~~G-~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLP 106 (229)
T 3iug_A 56 GIYRLSG-VASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELP 106 (229)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCS
T ss_pred CCeecCC-cHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCC
Confidence 4688777 4677888887765332 121 124567999999998863
No 59
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=27.24 E-value=1.2e+02 Score=18.94 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHhhCCCH-------HHHHHHHHHHhcCCChHHHHHHHHHHh---CCCCC-hhHHHHHHHhhHh
Q psy13513 2 EEEEREKMQVLVSNFTE-------DQLDRYEMYRRAAFPKAAIKRLIQTIS---GGSVS-QNVVIAMSGIAKV 63 (71)
Q Consensus 2 ~eee~~~~~~L~~~~~~-------eQ~~Rye~fRRs~f~K~~ikkli~~~~---~~sv~-~nv~i~v~g~aKv 63 (71)
.++|+.+..-+...||+ +|+. +.|++|+++...+.+|.+.+= +..+. +-.++||.=+.+.
T Consensus 28 t~ee~~~y~~iF~~lD~~dG~Isg~elr--~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~ 98 (121)
T 3fia_A 28 TVEERAKHDQQFHSLKPISGFITGDQAR--NFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLK 98 (121)
T ss_dssp CHHHHHHHHHHHHHTCCBTTBEEHHHHH--HHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCeECHHHHH--HHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHH
Confidence 46777777777777764 4443 568899999999999987543 12344 4666666555443
No 60
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=26.61 E-value=52 Score=21.19 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=29.6
Q ss_pred HHHHhcCCChHHHHHHHHHHh-CCCC--ChhHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTIS-GGSV--SQNVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~-~~sv--~~nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++= ...|++|....- |..+ ...-+-++||+-|.|.-|+=
T Consensus 46 GIfR~~g~-~~~i~~l~~~~~~~~~~~~~~~d~~~va~lLK~flreLp 92 (201)
T 3msx_B 46 GIFRQSAN-VKSCRELKEKLNSGVEVHLDCESIFVIASVLKDFLRNIP 92 (201)
T ss_dssp TTTTSCCC-HHHHHHHHHHHHHTCCCCTTSSCHHHHHHHHHHHHHTST
T ss_pred CeeeeCCC-HHHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHhCC
Confidence 46888874 667888877664 3322 22235678999999998863
No 61
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=26.36 E-value=67 Score=20.95 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=29.5
Q ss_pred HHHHhcCCChHHHHHHHHHHh-CCCCC--h---hHHHHHHHhhHhHhhhhc
Q psy13513 25 EMYRRAAFPKAAIKRLIQTIS-GGSVS--Q---NVVIAMSGIAKVFVGEIV 69 (71)
Q Consensus 25 e~fRRs~f~K~~ikkli~~~~-~~sv~--~---nv~i~v~g~aKvFVGEiV 69 (71)
.-||.++ +...|++|...+- |..+. . .=+-++||+-|.|.-|+=
T Consensus 55 GIfR~~G-~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLP 104 (214)
T 3byi_A 55 GIYRVSG-NLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELP 104 (214)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSS
T ss_pred CccccCC-CHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCC
Confidence 4688887 5677888877664 22221 1 124667999999998873
No 62
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=26.08 E-value=85 Score=16.98 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=13.6
Q ss_pred hhCCCHHHHHHHHHHHhcCCChHHHHHH
Q psy13513 13 VSNFTEDQLDRYEMYRRAAFPKAAIKRL 40 (71)
Q Consensus 13 ~~~~~~eQ~~Rye~fRRs~f~K~~ikkl 40 (71)
++.++......|-.+....+..+.+++.
T Consensus 44 l~~it~~~i~~~~~~l~~~~s~~t~~~~ 71 (110)
T 2khq_A 44 LKDIKRTEYQKFLNEYGLTHSYETIRKL 71 (110)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445555555555554433444444443
No 63
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1
Probab=26.00 E-value=71 Score=21.17 Aligned_cols=40 Identities=3% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHhhCCCHHHHHHHHHHHh------cCCChHHHHHHHHHHhCC
Q psy13513 8 KMQVLVSNFTEDQLDRYEMYRR------AAFPKAAIKRLIQTISGG 47 (71)
Q Consensus 8 ~~~~L~~~~~~eQ~~Rye~fRR------s~f~K~~ikkli~~~~~~ 47 (71)
....+..-||+++..|+..|++ .-..+-.+|.++...+|.
T Consensus 16 ~~~~~~~~Ls~~E~~~~~~~~~~~~r~~~la~R~~~r~al~~~lg~ 61 (228)
T 1qr0_A 16 ENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQL 61 (228)
T ss_dssp HHHHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4667889999999999998852 223355667777666664
No 64
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=25.97 E-value=30 Score=20.21 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.1
Q ss_pred HhCCCCChhHHHHHHHhhHhH-hhhhcc
Q psy13513 44 ISGGSVSQNVVIAMSGIAKVF-VGEIVE 70 (71)
Q Consensus 44 ~~~~sv~~nv~i~v~g~aKvF-VGEiVE 70 (71)
+.|.++|.|+..+-.++.++= .|+.++
T Consensus 6 ~rGl~CP~Pvl~~kkal~~l~~~G~~L~ 33 (87)
T 3hz7_A 6 ALGQVCPIPVIRAKKALAELGEAGGVVT 33 (87)
T ss_dssp CTTCCTTHHHHHHHHHHHTTGGGCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCCEEE
Confidence 357899999999999999886 887654
No 65
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=25.90 E-value=87 Score=17.03 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=15.2
Q ss_pred hhCCCHHHHHHHHHHHhcCCChHHHHHHH
Q psy13513 13 VSNFTEDQLDRYEMYRRAAFPKAAIKRLI 41 (71)
Q Consensus 13 ~~~~~~eQ~~Rye~fRRs~f~K~~ikkli 41 (71)
++.++++....|-.+-...+..+.+++.+
T Consensus 41 l~~It~~~i~~~~~~l~~~~s~~t~~~~~ 69 (111)
T 2kiw_A 41 IQTIKKHDYQRFVDDISAQYSKNYVDSIV 69 (111)
T ss_dssp GGGCCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 44556666666655544444455554443
No 66
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.57 E-value=50 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHhhCCCHHHHHH
Q psy13513 1 MEEEEREKMQVLVSNFTEDQLDR 23 (71)
Q Consensus 1 ~~eee~~~~~~L~~~~~~eQ~~R 23 (71)
|..+|+.++..-+..|+++++.|
T Consensus 18 mT~eEK~~Ls~~I~~Lp~e~L~~ 40 (90)
T 2jns_A 18 MSYEEKRQLSLDINKLPGEKLGR 40 (90)
T ss_dssp CCHHHHHHHHHHHTTSCHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCHHHHHH
Confidence 55688888888999999988765
No 67
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=24.87 E-value=43 Score=20.22 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q psy13513 4 EEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTIS 45 (71)
Q Consensus 4 ee~~~~~~L~~~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~ 45 (71)
+..+...-+++.+|+||+++ +..-.+-.|+.++.++.
T Consensus 33 ~~~~~l~~~l~~L~~e~l~~-----~~~~~~wSi~evv~HL~ 69 (178)
T 1rxq_A 33 EVPAKLKQAVEVMTDSQLDT-----PYRDGGWTVRQVVHHLA 69 (178)
T ss_dssp HHHHHHHHHHTTCCHHHHTS-----BSSTTSCBHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHhC-----CCCCCCCCHHHHHHHHH
Confidence 34566778899999999754 33334556666666655
No 68
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=24.26 E-value=29 Score=22.50 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhCCCHHHHHHH
Q psy13513 3 EEEREKMQVLVSNFTEDQLDRY 24 (71)
Q Consensus 3 eee~~~~~~L~~~~~~eQ~~Ry 24 (71)
++|-+....=+.+||+|++++|
T Consensus 4 ~ddf~~r~~hl~~l~d~el~~r 25 (121)
T 3kp1_E 4 ADDFQQRRAHLANLSDEELQTR 25 (121)
T ss_dssp --CHHHHTGGGTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHH
Confidence 3456667778999999999876
No 69
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=24.15 E-value=15 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.0
Q ss_pred HhCCCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 44 ISGGSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 44 ~~~~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
+.|.++|.|+..+-.++.++=.|++++
T Consensus 32 ~rGl~CP~PvlktkkaL~~l~~Ge~L~ 58 (97)
T 1je3_A 32 MVGEPCPYPAVATLEAMPQLKKGEILE 58 (97)
T ss_dssp SBCCSSSSSTHHHHHHTTTCCSSCEEE
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCEEE
Confidence 457899999999999999998888764
No 70
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=23.65 E-value=91 Score=20.78 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHHhC--CCCChhHHHHHHHhhHhHhhhhcc
Q psy13513 31 AFPKAAIKRLIQTISG--GSVSQNVVIAMSGIAKVFVGEIVE 70 (71)
Q Consensus 31 ~f~K~~ikkli~~~~~--~sv~~nv~i~v~g~aKvFVGEiVE 70 (71)
.||=+-|+|++....+ ..|+....+.++++--.++.||.|
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIle 146 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLE 146 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHH
Confidence 4899999999998643 489999999999999999999876
No 71
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=23.19 E-value=18 Score=17.07 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=5.0
Q ss_pred HHHHHHH
Q psy13513 20 QLDRYEM 26 (71)
Q Consensus 20 Q~~Rye~ 26 (71)
|++||..
T Consensus 2 qmnrydq 8 (23)
T 3syn_E 2 QMNRYDQ 8 (26)
T ss_pred ccchHHH
Confidence 6788864
No 72
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=23.17 E-value=62 Score=16.10 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHh
Q psy13513 34 KAAIKRLIQTIS 45 (71)
Q Consensus 34 K~~ikkli~~~~ 45 (71)
.+.|.+||++.+
T Consensus 6 ~~QV~~LI~~At 17 (33)
T 1w1n_A 6 PEQVDKLIQQAT 17 (33)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 356778887544
No 73
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=22.41 E-value=24 Score=18.73 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=11.9
Q ss_pred HHhhCCCHHHHHHHH
Q psy13513 11 VLVSNFTEDQLDRYE 25 (71)
Q Consensus 11 ~L~~~~~~eQ~~Rye 25 (71)
+=+.++||||.+-|-
T Consensus 18 Lh~~nLtEeQrn~yI 32 (38)
T 1zda_A 18 LHDPNLNEEQRNAKI 32 (38)
T ss_dssp HSCSSSCTTHHHHHH
T ss_pred HcCCCCCHHHHHhHH
Confidence 346899999998774
No 74
>2p1a_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.10A {Bacillus cereus} SCOP: a.213.1.2
Probab=21.00 E-value=99 Score=17.83 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHhC
Q psy13513 5 EREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISG 46 (71)
Q Consensus 5 e~~~~~~L~~~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~~ 46 (71)
.++...-+++.|++||++. +... ....|..+++++++
T Consensus 14 ~~~~~~~~l~~l~~e~l~~----~~~~-~~~Si~~~l~Hl~~ 50 (154)
T 2p1a_A 14 AVDTSIQMLDQYTEIDLKI----APIQ-SKRSLFEMYAHLSL 50 (154)
T ss_dssp HHHHHHHHGGGSCHHHHHH----CSSS-CSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHcC----CCCC-CcccHHHHHHHHHH
Confidence 4556677899999999743 3333 35668888888876
No 75
>2rd9_A BH0186 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.30A {Bacillus halodurans c-125}
Probab=20.89 E-value=52 Score=20.58 Aligned_cols=38 Identities=3% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHhC
Q psy13513 4 EEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISG 46 (71)
Q Consensus 4 ee~~~~~~L~~~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~~ 46 (71)
..+.....+++.||+||+++ +..-.+-.|+.++..+.+
T Consensus 33 ~~~~~l~~~l~~Lseeql~~-----~~~~~~wSi~elv~HL~~ 70 (193)
T 2rd9_A 33 RTPKTLEVFLEGLSDSWHQC-----NEGYETWTVYEVVVHLIE 70 (193)
T ss_dssp HHHHHHHHHHTTSCHHHHTC-----CSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHcC-----CCCCCCCCHHHHHHHHHH
Confidence 45667778999999999753 333344466666666554
No 76
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.80 E-value=41 Score=19.76 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=18.0
Q ss_pred hhCCCHHHHHHH-HHHHhc------CCChHHHHHHHHH
Q psy13513 13 VSNFTEDQLDRY-EMYRRA------AFPKAAIKRLIQT 43 (71)
Q Consensus 13 ~~~~~~eQ~~Ry-e~fRRs------~f~K~~ikkli~~ 43 (71)
++.||++|...+ ++|+.- .+++.-++.++..
T Consensus 1 Ms~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~ 38 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRT 38 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHh
Confidence 356888888775 345432 3455556665553
No 77
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=20.54 E-value=1.1e+02 Score=17.55 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHhcCC
Q psy13513 4 EEREKMQVLVSNFTEDQLDRYEMYRRAAF 32 (71)
Q Consensus 4 ee~~~~~~L~~~~~~eQ~~Rye~fRRs~f 32 (71)
+|++.+...+ +||+.|...+=.=||..+
T Consensus 32 ~er~eLA~~t-gLt~~qVkvWFqNRR~k~ 59 (66)
T 3nau_A 32 AEVYRLIEVT-GLARSEIKKWFSDHRYRC 59 (66)
T ss_dssp HHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCHHHhhHhcccchhhh
Confidence 3333333333 455555544444444433
No 78
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=20.42 E-value=39 Score=20.97 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHhCCCCC
Q psy13513 3 EEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVS 50 (71)
Q Consensus 3 eee~~~~~~L~~~~~~eQ~~Rye~fRRs~f~K~~ikkli~~~~~~sv~ 50 (71)
+.+..++..++++||+++.+--+. |+-+-.+||.. =.|.+|.
T Consensus 43 ~~~lkr~~aII~SMT~~Er~~P~i-----i~~SR~~RIA~-GSG~~v~ 84 (105)
T 1hq1_A 43 DKVLVRMEAIINSMTMKERAKPEI-----IKGSRKRRIAA-GSGMQVQ 84 (105)
T ss_dssp CSSHHHHHHHHHTSCHHHHHCGGG-----CCHHHHHHHHH-HHTCCHH
T ss_pred HHHHHHHHHHHHcCCHHHhhChhh-----cCHHHHHHHHc-cCCCCHH
Confidence 445677788999999999885433 45555566554 3344443
No 79
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=20.09 E-value=1.4e+02 Score=17.12 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q psy13513 17 TEDQLDRYEMYRRAAFPKAAIKRLIQTIS 45 (71)
Q Consensus 17 ~~eQ~~Rye~fRRs~f~K~~ikkli~~~~ 45 (71)
+..++-..=+-+.+.+++..++.+++.++
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~ 30 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEML 30 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44455444333337899999999998765
No 80
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=20.05 E-value=1.3e+02 Score=19.95 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCC----CChhHHHHHHHhhHhHh
Q psy13513 35 AAIKRLIQTISGGS----VSQNVVIAMSGIAKVFV 65 (71)
Q Consensus 35 ~~ikkli~~~~~~s----v~~nv~i~v~g~aKvFV 65 (71)
..|+||.|++.|.. -|+... -.+++||+
T Consensus 83 ~kirrla~svyg~p~q~papeef~---dava~v~~ 114 (139)
T 2r18_A 83 EQILRAATSIYGAPGQAEPPQAFI---DEVAKVYE 114 (139)
T ss_dssp HHHHHHHHHHHCCGGGCCCCHHHH---HHHHHHHH
T ss_pred HHHHHHHHHhhcCCccCCCCHHHH---HHHHHHHH
Confidence 67999999999853 333333 56677775
Done!