RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13513
(71 letters)
>1bh9_B TAFII28; histone fold, tata binding protein, transcription
regulation complex; HET: PMB; 2.60A {Homo sapiens}
SCOP: a.22.1.3 PDB: 1bh8_B*
Length = 89
Score = 91.7 bits (228), Expect = 1e-26
Identities = 46/56 (82%), Positives = 55/56 (98%)
Query: 16 FTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
F+E+QL+RYEMYRR+AFPKAAIKRLIQ+I+G SVSQNVVIAMSGI+KVFVGE+VE+
Sbjct: 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEE 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 1e-05
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 3 EEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVI-AMSGIA 61
E+R+++ F + + R + Y + + A+ L ++NV+I + G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLEL-------RPAKNVLIDGVLGSG 162
Query: 62 K-VFVGEIV 69
K ++
Sbjct: 163 KTWVALDVC 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.010
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 5 EREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQ 42
E++ ++ L + L ++Y + P AIK ++
Sbjct: 18 EKQALKKL-----QASL---KLYADDSAPALAIKATME 47
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 97
Score = 27.6 bits (61), Expect = 0.19
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 27 YRRAAFPKAAIKRLIQTISG-GSVSQNVVIAMSGIAKVFVGEIVEQ 71
+R P A IK++++ +S + + A++F+ E+ +
Sbjct: 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLR 60
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_T* 3vh5_T 3vh6_T
Length = 111
Score = 27.6 bits (61), Expect = 0.22
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 28 RRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70
R + IK++ V+++ + ++ + +I
Sbjct: 4 REPEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISS 46
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_A
Length = 140
Score = 25.8 bits (56), Expect = 1.0
Identities = 6/45 (13%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 28 RRAAFPKAAIKRLIQTISG-GSVSQNVVIAMSGIAKVFVGEIVEQ 71
P + ++ ++++ G ++ V+ M+ ++FV +
Sbjct: 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGA 60
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 93
Score = 25.2 bits (55), Expect = 1.4
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 32 FPKAAIKRLIQTI--SGGSVSQNVVIAMSGIAKVFVGEI 68
P A + R+++ G ++++ + F+ I
Sbjct: 9 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFI 47
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 25.2 bits (56), Expect = 2.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 15 NFTEDQLDRY----EMYRRAAFPKAAI 37
N TED +DRY + YR A K I
Sbjct: 178 NVTEDHMDRYPFGLQQYRAA---KLRI 201
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 25.1 bits (54), Expect = 2.2
Identities = 5/53 (9%), Positives = 19/53 (35%)
Query: 3 EEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVI 55
E ++ + F E+ + A + + ++ ++G +++
Sbjct: 62 ENLLSQLPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILF 114
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 24.8 bits (55), Expect = 2.2
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 6/26 (23%)
Query: 15 NFTEDQLDRY---EMYRRAAFPKAAI 37
N LD + E Y A K I
Sbjct: 188 NLMPTHLDYHGSFEDYVAA---KWNI 210
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.7 bits (53), Expect = 2.5
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 1 MEEEEREKMQVLVSNFTEDQLDRYEMYR 28
++ + Q +D + +
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQS 128
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 24.8 bits (55), Expect = 2.8
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 1 MEEEEREKMQVLVSN 15
M++ K+++L+SN
Sbjct: 4 MKKTATPKLRLLLSN 18
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_B
Length = 128
Score = 24.6 bits (53), Expect = 3.1
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 32 FPKAAIKRLIQTI--SGGSVSQNVVIAMSGIAKVFVGEI 68
P A I RLI+ SVS+ A++ A VF +
Sbjct: 10 LPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFV 48
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 24.4 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 EEEREKMQVLVSNFTEDQLDRY--EMYRRAAFPKAAIKRL 40
EE+E +Q F E + + + + FP I R
Sbjct: 13 PEEKE-VQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRF 51
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 24.1 bits (53), Expect = 4.5
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 13 VSNFTEDQLDR 23
V NF L R
Sbjct: 158 VCNFQIHHLQR 168
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP:
c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 24.0 bits (53), Expect = 4.8
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 13 VSNFTEDQLDR 23
VSN L+R
Sbjct: 138 VSNHLVPHLER 148
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 24.0 bits (53), Expect = 4.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 16 FTEDQLDRYEMY 27
FTED L RY Y
Sbjct: 201 FTEDVLARYRAY 212
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium
smegmatis} PDB: 2wzt_A
Length = 283
Score = 24.0 bits (53), Expect = 4.8
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 13 VSNFTEDQLDR 23
V NF + L+
Sbjct: 146 VCNFGAEDLET 156
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia
pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A*
3gnc_A* 3d6b_A
Length = 396
Score = 24.1 bits (53), Expect = 4.8
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 EEEREKMQVLVSNFTEDQL--DRYEMYRRAAFPKAAIKRL 40
++ER ++ + + +L E +R A + +
Sbjct: 21 DDERM-VRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREM 59
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 24.1 bits (53), Expect = 5.1
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 3 EEEREKMQVLVSNFTEDQL--DRYEMYRRAAFPKAAIKRL 40
EE+ ++ V E ++ E + +A FP +L
Sbjct: 57 PEEQA-IRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKL 95
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 24.0 bits (53), Expect = 5.1
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 16 FTEDQLDRYEMY 27
FTED R+E
Sbjct: 210 FTEDVSTRFEAL 221
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 24.1 bits (53), Expect = 5.3
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 3 EEEREKMQVLVSNFTEDQLDRY--EMYRRAAFPKAAIKRL 40
+E ++ + +++L R F + I +
Sbjct: 16 TDEIL-IRDTFRTYCQERLMPRILLANRNEVFHREIISEM 54
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 24.0 bits (53), Expect = 5.3
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 16 FTEDQLDRYEMY 27
FTE +Y
Sbjct: 199 FTEQCHQKYVAM 210
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: MSE 2PE SO4; 1.60A
{Ruminococcus gnavus}
Length = 252
Score = 23.8 bits (51), Expect = 5.5
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 57 MSGIAKVFVGEIVEQ 71
+ A++ G+ V+
Sbjct: 178 LDSYAELEKGDPVKA 192
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 23.7 bits (52), Expect = 5.7
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 3 EEEREKMQVLVSNFTEDQLDRY--EMYRRAAFPKAAIKRL 40
++ER+ + V F + +L + A P K
Sbjct: 28 QDERD-IAATVRQFVDTRLKPNVEGWFESATLPSELAKEF 66
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 24.0 bits (53), Expect = 5.8
Identities = 5/12 (41%), Positives = 5/12 (41%)
Query: 16 FTEDQLDRYEMY 27
ED RY Y
Sbjct: 219 LCEDTAARYRAY 230
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 23.1 bits (50), Expect = 6.0
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 26 MYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
M+ P A + RLI+ VS+ ++ + + EI ++
Sbjct: 1 MWMMGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKK 46
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 23.7 bits (52), Expect = 6.2
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 13 VSNFTEDQLDR 23
VSNF L+R
Sbjct: 161 VSNFRTADLER 171
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 23.6 bits (52), Expect = 6.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 16 FTEDQLDRYEMY 27
F +D R+E Y
Sbjct: 238 FHDDTPKRFEAY 249
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961;
structural genomics, PSI, protein structure initiative;
1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Length = 317
Score = 23.7 bits (52), Expect = 6.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 13 VSNFTEDQLDR 23
VSN+ DQ+ R
Sbjct: 152 VSNWNNDQISR 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants,
DNA-repair, ATP-binding, DNA DA recombination, DNA
repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium
smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A*
1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A
2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A*
2zrp_A* 2zre_A* ...
Length = 349
Score = 23.4 bits (51), Expect = 6.9
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 1 MEEEEREKMQVLVSNFTEDQLDRYEMYRRAAFPKAAIKRL-------IQTISGGSVSQNV 53
M ++ ++ + L Q+D+ F K ++ RL I I GS+S +V
Sbjct: 1 MAQQAPDREKAL--ELAMAQIDK-------NFGKGSVMRLGEEVRQPISVIPTGSISLDV 51
Query: 54 VIAMSGIAKVFVGEIVE 70
+ + G+ + G ++E
Sbjct: 52 ALGIGGLPR---GRVIE 65
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc,
PSI-biology, structural genomics; 1.96A {Sinorhizobium
meliloti}
Length = 298
Score = 23.7 bits (52), Expect = 6.9
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 13 VSNFTEDQLDR 23
+SNF Q++
Sbjct: 157 ISNFNTTQMEE 167
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 23.6 bits (52), Expect = 7.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 16 FTEDQLDRYEMY 27
FT+D R+E Y
Sbjct: 197 FTDDTAMRFEAY 208
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT;
2.10A {Trypanosoma brucei}
Length = 281
Score = 23.6 bits (52), Expect = 7.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 13 VSNFTEDQLDR 23
VSNF E ++
Sbjct: 143 VSNFHEHHIEE 153
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase;
HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB:
1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A*
3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A*
1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Length = 331
Score = 23.7 bits (52), Expect = 7.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 13 VSNFTEDQLDR 23
VSNF QL+
Sbjct: 165 VSNFNRRQLEM 175
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid,
biosynthesis, plant protein; HET: NAP; 1.70A {Medicago
sativa}
Length = 312
Score = 23.7 bits (52), Expect = 7.4
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 13 VSNFTEDQLDR 23
VSNF+ +L+
Sbjct: 165 VSNFSVKKLEN 175
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: CIT; 1.60A {Leishmania major}
Length = 288
Score = 23.3 bits (51), Expect = 7.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 13 VSNFTEDQLDR 23
VSNF L+
Sbjct: 152 VSNFHIHHLED 162
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 23.6 bits (52), Expect = 7.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 16 FTEDQLDRYEMY 27
F+E DRY+ Y
Sbjct: 223 FSESVEDRYKAY 234
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 23.6 bits (52), Expect = 7.9
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 16 FTEDQLDRYEMY 27
F E+ R+E
Sbjct: 194 FNENVKMRFEAQ 205
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 23.6 bits (52), Expect = 8.1
Identities = 3/12 (25%), Positives = 8/12 (66%)
Query: 16 FTEDQLDRYEMY 27
F+++ +R+ Y
Sbjct: 199 FSDNTPERFRAY 210
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 23.3 bits (51), Expect = 8.1
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 13 VSNFTEDQLDR 23
VSNF L+
Sbjct: 174 VSNFQVHHLEE 184
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK
SGX research center for structural genomics, NYSGXRC,
function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Length = 145
Score = 23.4 bits (50), Expect = 8.2
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 44 ISGGSVSQNVVIAMSGIAKV 63
+SGG+V Q+ ++A +
Sbjct: 122 VSGGTVEQDQLLAQCALDCF 141
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase,
NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1lwi_A*
Length = 323
Score = 23.3 bits (51), Expect = 8.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 13 VSNFTEDQLDR 23
VSNF QL+R
Sbjct: 165 VSNFNCRQLER 175
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 23.3 bits (51), Expect = 8.5
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 13 VSNFTEDQLDR 23
VSNF L
Sbjct: 147 VSNFEPHHLTE 157
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A
{Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A
1a7w_A 1b6w_A 1bfm_A
Length = 68
Score = 22.7 bits (49), Expect = 8.7
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
P A I R+I+ VS + IA++ + + EI +
Sbjct: 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASE 42
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 23.2 bits (51), Expect = 9.4
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 31 AFPKAAIKR---LIQTISGGSVSQNVVI 55
A A++R L+ I GG + I
Sbjct: 367 ALQHKAMERATRLLIDICGGEAGPVIDI 394
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.337
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,085,713
Number of extensions: 55053
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 65
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)