RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13513
         (71 letters)



>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 89

 Score = 92.4 bits (230), Expect = 2e-27
 Identities = 46/55 (83%), Positives = 54/55 (98%)

Query: 16 FTEDQLDRYEMYRRAAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVE 70
          F+E+QL+RYEMYRR+AFPKAAIKRLIQ+I+G SVSQNVVIAMSGI+KVFVGE+VE
Sbjct: 1  FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVE 55


>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
          fervidus, histone A [TaxId: 2180]}
          Length = 68

 Score = 30.5 bits (69), Expect = 0.003
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
             P A I R+I+      VS +  IA++ + +    EI  +
Sbjct: 2  GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASE 43


>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 29.7 bits (67), Expect = 0.007
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 30 AAFPKAAIKRLIQT-ISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
          A FP A IK+++QT    G V+  V + +S   ++F+  ++++
Sbjct: 1  ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKK 43


>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 151

 Score = 30.5 bits (69), Expect = 0.008
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 32  FPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
           F +A ++R+++       S + V   + +      E+ E+
Sbjct: 80  FGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEK 119



 Score = 25.5 bits (56), Expect = 0.44
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 32 FPKAAIKRLIQTISGG-SVSQNVVIAMSGIAKVFVGEIVEQ 71
           PKAAI+R+ +   G   +SQ+    +          +   
Sbjct: 2  LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANA 42


>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
          horikoshii) [TaxId: 53953]}
          Length = 66

 Score = 29.0 bits (65), Expect = 0.012
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 30 AAFPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
             P A + RLI+      VS+     ++   + +  EI ++
Sbjct: 1  GELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKK 42


>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
          (Xenopus laevis) [TaxId: 8355]}
          Length = 82

 Score = 26.6 bits (59), Expect = 0.11
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 33 PKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
           K AI+RL +      +S  +     G+ KVF+  ++  
Sbjct: 11 TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD 49


>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025
           {Bacteroides fragilis [TaxId: 817]}
          Length = 459

 Score = 25.4 bits (54), Expect = 0.67
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 3   EEEREK--MQVLVSNFTEDQLDRYEMYRRAAFPK 34
           EE+ E+  MQ  +  F +   D +    R  +P 
Sbjct: 374 EEQIERIIMQKYLVTFYQGNWDSFYEQLRTGYPD 407


>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 172

 Score = 24.0 bits (52), Expect = 1.9
 Identities = 6/40 (15%), Positives = 17/40 (42%)

Query: 32  FPKAAIKRLIQTISGGSVSQNVVIAMSGIAKVFVGEIVEQ 71
            P   I  L++ + G  +   V + +  + +    +I++ 
Sbjct: 100 LPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKL 139


>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus
           thermophilus [TaxId: 274]}
          Length = 209

 Score = 23.9 bits (51), Expect = 1.9
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 23  RYEMYRRAAFPKAAIKR---LIQTISGGSVSQNVV 54
           R+E          A +R   L+Q ++G  V++ ++
Sbjct: 169 RFERGVDPLGQVPAQRRALSLLQALAGARVAEALL 203


>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
          {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 23.5 bits (49), Expect = 2.9
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 33 PKAAIKRLIQTISGGSVSQNVVIAMSG 59
          P   I   +  I        V++ +SG
Sbjct: 3  PAKIIDDAVARIREQVGDDKVILGLSG 29


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 23.4 bits (50), Expect = 3.0
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 1   MEEEEREKMQVLVSNFTEDQLDRYE 25
            E EE+  ++ + +  TE+ L    
Sbjct: 220 EEVEEKNILEKVKAAMTEEDLAELA 244


>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 255

 Score = 22.7 bits (47), Expect = 6.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 34  KAAIKRLIQTISGGSVSQNVVI 55
           + A  +LI  ++G S  Q ++I
Sbjct: 229 RQAACQLIAQVTGRSEPQQIII 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.337 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,585
Number of extensions: 9315
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 16
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)