RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13515
(526 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 58.4 bits (142), Expect = 2e-10
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 15/149 (10%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVR---YTCDICSQDY-----STKYYLKLHKQVHE 79
C + F L H + H+ + C +Y L +H + H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 80 G-KQHEC--EKCPRLFPSSKMLYDHTMRSHKTRELFKCHQ--CSRKYMSKPSLRRHIYAT 134
G K H+C E C + + + L H +RSH + + C CS+ + + +H T
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 135 HIN-KGVRFSCHLCGKSFHREQSLRKHLR 162
H N K C K + SLRKH++
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 50.3 bits (121), Expect = 1e-07
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 28/167 (16%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEE---NQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDIC 198
C + F ++ L H+ E + + C C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------CSRE 45
Query: 199 SQDYSTKYYLKLHKQVHEG-KQHEC--EECSRLFPSSKMLYDHTMRSHKTRVLFKCHQ-- 253
+ + +Y L +H + H G K H+C E C + + + L H +RSH + C
Sbjct: 46 LRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEG 104
Query: 254 CSRKYMSKPSLRRHIYANHIN-KGVRFSCHLCGKSFHREQSLRKHLR 299
CS+ + + +H H N K C K + SLRKH++
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 42.2 bits (100), Expect = 7e-05
Identities = 39/120 (32%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 407 QCEVYQCYHCLKIFKRKKDLPRHIMSVHMRI-----KYPCTI--CPREFQNKANLNHHLA 459
C C L+ FK + L VHMR + CT C + + NL HL
Sbjct: 36 VCHWGGCSRELRPFKAQYML-----VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Query: 460 SHAG-KTYECE--NCSKIFNSKRKLYSHKRKDHMGLT-YSCFM--CNKTITSKNSLRDHI 513
SH G K Y CE CSK F++ H+ + H Y C + C K T +SLR H+
Sbjct: 91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 39.1 bits (92), Expect = 0.001
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK---YPCTIC-----PREFQNKANLNHHLASHA 462
+ C + F ++ L HI S H+ + + C R F+ + L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 463 G-KTYEC--ENCSKIFNSKRKLYSHKRKDHMGLT-YSC--FMCNKTITSKNSLRDHIHLF 516
G K ++C E C K ++ L +H R H G Y C C+K ++ + H +
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 517 H 517
H
Sbjct: 123 H 123
Score = 38.3 bits (90), Expect = 0.001
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 218 KQHECEECSRLFPSSKMLYDH--TMRSHKTRVLFKCHQCSRKYMSKP-----SLRRHIYA 270
+ CS+ F S + L H + H R F CH +P L H+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-- 59
Query: 271 NHINKGVR-FSCHL--CGKSFHREQSLRKHLR 299
+ G + C C KS+ R ++L+ HLR
Sbjct: 60 -RRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Score = 31.0 bits (71), Expect = 0.46
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDHMGL---TYSCFMCNKTITSK 506
+ CS+ F+S+ +L H +H+ + C + +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR 47
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 55.9 bits (136), Expect = 3e-09
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAH--VH- 190
++C CGKSF R L +H R H C +C K+F K +L H H
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-------THTGEKPYKCPECG-KSFSDKKDLTRHQRTHT 73
Query: 191 GKR--FCDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRV 247
G++ C C + +S + L+ H++ H G K + C EC + F L H R+H
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEK 132
Query: 248 LFKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
+KC +C + + + +L H + G + + C CGKSF R +L H R
Sbjct: 133 PYKCPECGKSFSREDNLHTH---QRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 53.6 bits (130), Expect = 2e-08
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
C CGK F L H +TH + Y C C + +S + L+ H++ H G K + C +C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 89 PRLFPSSKMLYDHTMRSHKTRE-LFKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHL 146
+ F L H R+H T E +KC +C + + + +L H TH G + + C
Sbjct: 112 GKSFSQLAHLRAH-QRTH-TGEKPYKCPECGKSFSREDNLHTH-QRTHT--GEKPYKCPE 166
Query: 147 CGKSFHREQSLRKHLR 162
CGKSF R +L H R
Sbjct: 167 CGKSFSRRDALNVHQR 182
Score = 52.1 bits (126), Expect = 5e-08
Identities = 56/170 (32%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
C CGK F R L EH +TH + Y C C + +S K L H++ H G K ++C +C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 89 PRLFPSSKMLYDHTMRSHKTRE-LFKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHL 146
+ F L H R+H T E + C +C + + LR H TH G + + C
Sbjct: 84 GKSFSQRANLRAH-QRTH-TGEKPYACPECGKSFSQLAHLRAH-QRTHT--GEKPYKCPE 138
Query: 147 CGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAH 188
CGKSF RE +L H R H C +C K+F + L H
Sbjct: 139 CGKSFSREDNLHTHQR-------THTGEKPYKCPECG-KSFSRRDALNVH 180
Score = 49.4 bits (119), Expect = 4e-07
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-YPCTICPREFQNKANLNHHLASHAG-KTYEC 468
Y+C C K F ++ +L H H K Y C C + F A+L H +H G K Y+C
Sbjct: 78 YKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 469 ENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
C K F+ + L++H+R H G Y C C K+ + +++L H H
Sbjct: 137 PECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 49.0 bits (118), Expect = 6e-07
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRI----K-YPCTICPREFQNKANLNHHLASHAG-K 464
Y+C C K F KKDL + H R K Y C C + F +ANL H +H G K
Sbjct: 50 YKCPECGKSFSDKKDL-----TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 465 TYECENCSKIFNSKRKLYSHKRKDHMG-LTYSCFMCNKTITSKNSLRDH--IH 514
Y C C K F+ L +H+R H G Y C C K+ + +++L H H
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 48.2 bits (116), Expect = 1e-06
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 37 FPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSS 95
+ Y C C + +S +L H++ H G K ++C +C + F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 96 KMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHRE 154
K L H R+H + +KC +C + + + +LR H TH G + ++C CGKSF +
Sbjct: 63 KDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHT--GEKPYACPECGKSFSQL 118
Query: 155 QSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAH--VH-GKR--FCDICSQD 201
LR H R H C +C K+F + NL H H G++ C C +
Sbjct: 119 AHLRAHQR-------THTGEKPYKCPECG-KSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 202 YSTKYYLKLHKQVHEG 217
+S + L +H++ H G
Sbjct: 171 FSRRDALNVHQRTHTG 186
Score = 47.4 bits (114), Expect = 2e-06
Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRI----K-YPCTICPREFQNKANLNHHLASHAG-K 464
Y C C K F R L + H R K Y C C + F +K +L H +H G K
Sbjct: 22 YACPECGKSFSRSDHL-----AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 465 TYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
Y+C C K F+ + L +H+R H G Y+C C K+ + LR H H
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 44.4 bits (106), Expect = 2e-05
Identities = 51/202 (25%), Positives = 74/202 (36%), Gaps = 49/202 (24%)
Query: 150 SFHREQSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAHVHGKRF------- 194
S S L C +C K+F +L H +R
Sbjct: 2 SEFGSSSSVAQAA-------LEPGEKPYACPECG-KSFSRSDHLAEH---QRTHTGEKPY 50
Query: 195 -CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCH 252
C C + +S K L H++ H G K ++C EC + F L H R+H + C
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACP 109
Query: 253 QCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLREEENQDQLH--- 308
+C + + LR H + G + + C CGKSF RE +L H R H
Sbjct: 110 ECGKSFSQLAHLRAH---QRTHTGEKPYKCPECGKSFSREDNLHTHQR-------THTGE 159
Query: 309 ----CDKCRYKTF-LKSNLIAH 325
C +C K+F + L H
Sbjct: 160 KPYKCPECG-KSFSRRDALNVH 180
Score = 41.7 bits (99), Expect = 2e-04
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 433 VHMRI----K-YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+ K Y C C + F +L H +H G K Y+C C K F+ K+ L H+R
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 487 KDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
H G Y C C K+ + + +LR H H
Sbjct: 71 T-HTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 29.3 bits (67), Expect = 2.3
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
C CGK F R L H +TH + Y C C + +S + L +H++ H G
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 50.2 bits (121), Expect = 8e-08
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRI-----KYPCTICPREFQNKANLNHH---LASHA 462
+C C K F K L VH R + C C + + K NL H +
Sbjct: 8 VECPTCHKKFLSKYYL-----KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 463 G-KTYECENCSKIFNSKRKLYSHKRKDHMG-LTYSCFMCNKTITSKNSLRDH---IH 514
+ + C C + F + +L H H G + Y C C++ K L+ H +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 49.0 bits (118), Expect = 2e-07
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 411 YQCYHCLKIFKRKKDLPRH--IMSVHMRIK-YPCTICPREFQNKANLNHHLASHAG-KTY 466
++C C K + RK++L H ++ + + C++C F+ + L H+ SH G Y
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 467 ECENCSKIFNSKRKLYSHKRKDHMG 491
+C +CS+ F K+ L SH K H G
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 45.2 bits (108), Expect = 4e-06
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLH---KQVHEG-KQH 83
C C K F LK H + H + + C C + Y K L H ++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 84 ECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATH 135
C C F L H M SH +KC CS+++M K L+ H+ H
Sbjct: 68 TCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 44.8 bits (107), Expect = 6e-06
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHK--TRE-L 111
C C + + +KYYLK+H + H G K EC KC + + + L +H + E +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQV 66
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKH 160
F C C + + LR H + G + C C + F +++ L+ H
Sbjct: 67 FTCSVCQETFRRRMELRLH---MVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 44.4 bits (106), Expect = 6e-06
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINKGV 277
EC C + F S L H R H F+C +C + Y K +L H N +N+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 278 R-FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAH 325
+ F+C +C ++F R LR H+ H C C + F K +L +H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMV-------SHTGEMPYKCSSCS-QQFMQKKDLQSH 113
Score = 41.0 bits (97), Expect = 1e-04
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLREEENQDQL 170
+C C +K++SK L+ H + G + F C CGK + R+++L +H +
Sbjct: 8 VECPTCHKKFLSKYYLKVH---NRKHTGEKPFECPKCGKCYFRKENLLEHEARN----CM 60
Query: 171 HCDKCRYKTFLKSNLIAHVHGKRFCDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLF 229
+ + + C +C + + + L+LH H G ++C CS+ F
Sbjct: 61 NRSEQVFT----------------CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Query: 230 PSSKMLYDHTMRSH 243
K L H ++ H
Sbjct: 105 MQKKDLQSHMIKLH 118
Score = 32.5 bits (75), Expect = 0.11
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 461 HAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH 512
+G EC C K F SK L H RK H G + C C K K +L +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEH 54
Score = 27.5 bits (62), Expect = 5.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQ-VHEG 80
F C C + F R L+ H +H ++ Y C CSQ + K L+ H +H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 49.0 bits (118), Expect = 8e-08
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQHECEK 87
F C C + F R L H +TH + + CDIC + ++ K H+ + +K
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 88 CPRLFPSSKMLYDH--TMRSH 106
L + L + ++
Sbjct: 64 VEELLSKNYHLENEVARLKKL 84
Score = 46.7 bits (112), Expect = 5e-07
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLTYSCF 497
+ C IC R F +L H+ +H G K + C+ C + F + H+ L
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHILPILED 62
Query: 498 MCNKTITSKNSLRDHI 513
+ ++ L + +
Sbjct: 63 KVEELLSKNYHLENEV 78
Score = 46.7 bits (112), Expect = 6e-07
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRI-----KYPCTICPREFQNKANLNHHLASHAGKT 465
+QC C++ F R L H +R + C IC R+F H
Sbjct: 4 FQCRICMRNFSRSDHLTTH-----IRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP 58
Query: 466 YECENCSKIFNSKRKLYSHKR 486
+ ++ + L +
Sbjct: 59 ILEDKVEELLSKNYHLENEVA 79
Score = 43.3 bits (103), Expect = 8e-06
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKC 114
+ C IC +++S +L H + H G K C+ C R F S H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQ-HILPILE 61
Query: 115 HQCSRKYMSKPSLRRHI 131
+ L +
Sbjct: 62 DKVEELLSKNYHLENEV 78
Score = 39.8 bits (94), Expect = 1e-04
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQD 201
F C +C ++F R L H+R H + + CDIC +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-------THTGEKPFA----------------CDICGRK 40
Query: 202 YSTKYYLKLHKQVHEGKQHECEECSRLFPSSKMLYDH--TMRSH 243
++ K H+ + ++ L + L + ++
Sbjct: 41 FARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 38.6 bits (91), Expect = 4e-04
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINKGV 277
K +C C R F S L H +R+H F C C RK+ +RH I +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHR---DIQHIL 57
Query: 278 RFSCHLCGKSFHREQSLRKH 297
+ + L
Sbjct: 58 PILEDKVEELLSKNYHLENE 77
Score = 38.2 bits (90), Expect = 5e-04
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 81 KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINKGV 140
K +C C R F S L H +R+H + F C C RK+ +RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHR-DIQHIL-- 57
Query: 141 RFSCHLCGKSFHREQSLRKH 160
+ + L
Sbjct: 58 PILEDKVEELLSKNYHLENE 77
Score = 29.8 bits (68), Expect = 0.52
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
F+C C R + L HI + G + F+C +CG+ F R ++H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI---RTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 27.8 bits (63), Expect = 2.0
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
K ++C C + F+ L +H R H G ++C +C + + + H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQ 54
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 47.0 bits (113), Expect = 4e-07
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG-K 464
++C C K F RK L HMR Y C C + ++LN HL H+ +
Sbjct: 9 HKCEVCGKCFSRKDKL-----KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 465 TYECENCSKIFNSKRKLYSHKR 486
++C+ C + +L H R
Sbjct: 64 PFKCQICPYASRNSSQLTVHLR 85
Score = 41.3 bits (98), Expect = 5e-05
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSC 496
+ C +C + F K L H+ H G K Y+C+ C L H R H + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKC 67
Query: 497 FMCNKTITSKNSLRDH--IH 514
+C + + L H H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 40.5 bits (96), Expect = 1e-04
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
C CGK F R LK H + H Y C C + L H ++H + +C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 89 PRLFPSSKMLYDHTMRSH 106
P +S L H +RSH
Sbjct: 71 PYASRNSSQLTVH-LRSH 87
Score = 37.8 bits (89), Expect = 7e-04
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINKGV 277
H+CE C + F L H MR H +KC C SL +H+ I+
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHL---RIHSDE 62
Query: 278 R-FSCHLCGKSFHREQSLRKHLR 299
R F C +C + L HLR
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR 85
Score = 37.4 bits (88), Expect = 0.001
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQ 253
C++C + +S K LK H + H G K ++C+ C S L H +R H FKC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQI 69
Query: 254 CSRKYMSKPSLRRH 267
C + L H
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 35.1 bits (82), Expect = 0.006
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 32/108 (29%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKC 114
+ C++C + +S K LK H + H G K ++C+ C S L H +R H + E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIH-SDE---- 62
Query: 115 HQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLR 162
+P F C +C + L HLR
Sbjct: 63 ---------RP----------------FKCQICPYASRNSSQLTVHLR 85
Score = 33.9 bits (79), Expect = 0.019
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG-K 464
Y+C C L + H+RI + C ICP +N + L HL SH G
Sbjct: 37 YKCKTCDYAAADSSSL-----NKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Query: 465 TYEC 468
Sbjct: 92 GPSS 95
Score = 33.6 bits (78), Expect = 0.027
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 460 SHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
S ++CE C K F+ K KL +H R H G+ Y C C+ +SL H IH
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 30.9 bits (71), Expect = 0.22
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 144 CHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAH--VH-GK 192
C +CGK F R+ L+ H+R H C C S+L H +H +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-------CHTGVKPYKCKTCD-YAAADSSSLNKHLRIHSDE 62
Query: 193 RF--CDICSQDYSTKYYLKLHKQVHEG-KQHEC 222
R C IC L +H + H G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 29.3 bits (67), Expect = 0.90
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLREEENQDQL 170
KC C + + K L+ H+ + GV+ + C C + SL KHLR +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM---RCHTGVKPYKCKTCDYAAADSSSLNKHLR-------I 58
Query: 171 H-------CDKCRYKTFLKSNLIAH 188
H C C Y + S L H
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVH 83
Score = 29.3 bits (67), Expect = 0.90
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLREEENQDQL 307
KC C + + K L+ H+ + GV+ + C C + SL KHLR +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM---RCHTGVKPYKCKTCDYAAADSSSLNKHLR-------I 58
Query: 308 H-------CDKCRYKTFLKSNLIAH 325
H C C Y + S L H
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVH 83
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 47.1 bits (113), Expect = 5e-07
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG-- 463
C C KIF+ L RH Y C +C F+ K +++H+ SH G
Sbjct: 8 VACEICGKIFRDVYHLNRH-----KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 464 -KTYECENCSKIFNSKRKLYSHKRKDHMG 491
K Y C++C K F+ L H ++ H G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 46.7 bits (112), Expect = 6e-07
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT---Y 494
C IC + F++ +LN H SH+G K Y C C F K ++ H R H G Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPY 66
Query: 495 SCFMCNKTITSKNSLRDHIHLFH 517
C C K + + L HI H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 42.5 bits (101), Expect = 2e-05
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTREL--- 111
C+IC + + Y+L HK H G K + C C F + H +RSH +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH-DGSVGKP 65
Query: 112 FKCHQCSRKYMSKPSLRRHIYATH 135
+ C C + + L HI H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 42.1 bits (100), Expect = 3e-05
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG---KQHE 84
C CGKIF + L H +H + Y+C +C + K + H + H+G K +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 85 CEKCPRLFPSSKMLYDHTMRSH 106
C+ C + F L H + H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
Score = 37.5 bits (88), Expect = 0.001
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRH--IYANHINK 275
CE C ++F L H SH + C C ++ K + H + + K
Sbjct: 6 SGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 276 GVRFSCHLCGKSFHREQSLRKHLR 299
+ C CGK F R L H++
Sbjct: 65 --PYICQSCGKGFSRPDHLNGHIK 86
Score = 34.8 bits (81), Expect = 0.010
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 40/112 (35%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTFLKSNLIAHVHGKRF 194
+C +CGK F L +H H C C G RF
Sbjct: 8 VACEICGKIFRDVYHLNRHKL-------SHSGEKPYSCPVC---------------GLRF 45
Query: 195 CDICSQDYSTKYYLKLHKQVHEG---KQHECEECSRLFPSSKMLYDHTMRSH 243
K + H + H+G K + C+ C + F L H + H
Sbjct: 46 --------KRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 31.3 bits (72), Expect = 0.15
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
CE C KIF L HK H G YSC +C K+ + H H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 29.4 bits (67), Expect = 0.63
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR--EEENQD 305
C C + + L RH + G + +SC +CG F R+ + H+R +
Sbjct: 8 VACEICGKIFRDVYHLNRHK---LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 306 QLHCDKCRYKTF-LKSNLIAHVHGYH 330
C C K F +L H+ H
Sbjct: 65 PYICQSCG-KGFSRPDHLNGHIKQVH 89
Score = 29.0 bits (66), Expect = 1.1
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
C C + + L RH + G + +SC +CG F R+ + H+R
Sbjct: 8 VACEICGKIFRDVYHLNRHK---LSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 46.7 bits (112), Expect = 5e-07
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRL 91
C + F + G L H + H + + C IC +++S +L H + H G K C+ C R
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 92 FPSSKMLYDHTMRSH 106
F S H + H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 39.4 bits (93), Expect = 2e-04
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 218 KQHEC--EECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINK 275
+ + C E C R F S L H +R H + F+C C R + L HI +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI---RTHT 58
Query: 276 GVR-FSCHLCGKSFHREQSLRKHLR 299
G + F+C +CG+ F R ++H +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTK 83
Score = 39.0 bits (92), Expect = 3e-04
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 439 YPCTI--CPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-Y 494
Y C + C R F +L H+ H G K ++C C + F+ L +H R H G +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 495 SCFMCNKTITSKNSLRDH--IH 514
+C +C + + + H IH
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 37.8 bits (89), Expect = 6e-04
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 25/98 (25%)
Query: 147 CGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQDYSTKY 206
C + F + SL +H+R +H + ++ C IC +++S
Sbjct: 12 CDRRFSQSGSLTRHIR-------IHTGQKPFQ----------------CRICMRNFSRSD 48
Query: 207 YLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
+L H + H G K C+ C R F S H + H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIH 85
Score = 37.4 bits (88), Expect = 0.001
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
F C C + F R L H +TH + + CDIC + ++ K H ++H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 37.4 bits (88), Expect = 0.001
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 34/110 (30%)
Query: 56 YTCDI--CSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRELF 112
Y C + C + +S L H ++H G K +C C R F S L H +R+H T E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTH-TGE-- 60
Query: 113 KCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLR 162
KP F+C +CG+ F R ++H +
Sbjct: 61 -----------KP----------------FACDICGRKFARSDERKRHTK 83
Score = 29.7 bits (68), Expect = 0.48
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG 463
+QC C++ F R L + H+R + C IC R+F H H
Sbjct: 35 FQCRICMRNFSRSDHL-----TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 48.1 bits (115), Expect = 6e-07
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYT---------CDICSQDYSTKYYLKLHKQVH 78
P C + F + L H H+ C + + KY L H +VH
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 79 EG-KQHEC--EKCPRLFPSSKMLYDHTMRSHKTRELFKCH--QCSRKYMSKPSLRRH 130
G K C C ++F S+ L H R+H + FKC C R++ + ++H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 45.4 bits (108), Expect = 5e-06
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQD 201
C ++F L H+ E HV C +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTME--------------HVGGPEQNNHVCYWEECPREGKS 71
Query: 202 YSTKYYLKLHKQVHEG-KQHEC--EECSRLFPSSKMLYDHTMRSHKTRVLFKCH--QCSR 256
+ KY L H +VH G K C C ++F S+ L H R+H FKC C R
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDR 130
Query: 257 KYMSKPSLRRH 267
++ + ++H
Sbjct: 131 RFANSSDRKKH 141
Score = 45.0 bits (107), Expect = 9e-06
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 19/145 (13%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG----------KQ 82
G + ++ C + +ST + L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 83 HECEKCPRLFPSSKMLYDHTMRSHKTRELFKCH--QCSRKYMSKPSLRRHIYATHINKGV 140
EC + + F + L +H +R H + F C C + + +L+ H TH G
Sbjct: 63 EECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHK-RTHT--GE 118
Query: 141 R-FSCHL--CGKSFHREQSLRKHLR 162
+ F C C + F +KH+
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 40.7 bits (96), Expect = 3e-04
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 411 YQCYHCLKIFKRKKDLPRHIM---------SVHMRIKYPCTICPREFQNKANLNHHLASH 461
C + F +L H+ + H+ C + F+ K L +H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 462 AG-KTYEC--ENCSKIFNSKRKLYSHKRKDHMGLT-YSCFM--CNKTITSKNSLRDHIH 514
G K + C C KIF L HKR H G + C C++ + + + H+H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 40.0 bits (94), Expect = 4e-04
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH---------KTRV 247
K + E + C R F + L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCY 61
Query: 248 LFKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHL--CGKSFHREQSLRKHLR 299
+C + + + +K L HI ++ G + F C CGK F R ++L+ H R
Sbjct: 62 WEECPREGKSFKAKYKLVNHI---RVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Score = 40.0 bits (94), Expect = 5e-04
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 403 TGTQQCEVYQCYHCLKIFKRKKDLPRHIMSVHMRI-----KYPCTI--CPREFQNKANLN 455
C +C K FK K L H+R+ +PC C + F NL
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKL-----VNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 456 HHLASHAG-KTYEC--ENCSKIFNSKRKLYSHKR 486
H +H G K ++C E C + F + H
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 36.5 bits (85), Expect = 0.006
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 17/84 (20%)
Query: 418 KIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG--------- 463
+ + + + I P C R F L H+
Sbjct: 2 SSGSSGQPIKQEL--SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 464 -KTYECENCSKIFNSKRKLYSHKR 486
EC K F +K KL +H R
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIR 83
Score = 36.1 bits (84), Expect = 0.010
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 224 ECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINK-------G 276
K + ++ C R + + L H+ H+
Sbjct: 2 SSGSSGQPIKQELSC-KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 277 VRFSCHLCGKSFHREQSLRKHLR 299
C GKSF + L H+R
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIR 83
Score = 33.4 bits (77), Expect = 0.077
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 444 CPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDH---------MGLT 493
Q + ++C + F++ +L +H +H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 494 YSCFMCNKTITSKNSLRDHI 513
C K+ +K L +HI
Sbjct: 63 EECPREGKSFKAKYKLVNHI 82
Score = 33.4 bits (77), Expect = 0.077
Identities = 29/160 (18%), Positives = 45/160 (28%), Gaps = 32/160 (20%)
Query: 87 KCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINK-------G 139
K + + C R + + L H+ H+
Sbjct: 2 SSGSSGQPIKQELSC-KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 140 VRFSCHLCGKSFHREQSLRKHLR----EEENQDQLHCDKCRY----KTF-LKSNLIAH-- 188
C GKSF + L H+R E+ C + K F NL H
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPF-------PCPFPGCGKIFARSENLKIHKR 113
Query: 189 VH-GKR----FCDICSQDYSTKYYLKLHKQVHEG-KQHEC 222
H G++ + C + ++ K H VH K
Sbjct: 114 THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 31.1 bits (71), Expect = 0.48
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 28 FPCVY--CGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQVHEG-KQ 82
FPC + CGKIF R LK H +TH + + C+ C + ++ K H VH K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 83 HEC 85
Sbjct: 151 GPS 153
Score = 28.8 bits (65), Expect = 2.7
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 470 NCSKIFNSKRKLYSHKRKDHMGLTYSCFMCNKTITSKNSLRDHIHLFHGRK 520
+ ++ S K D L+ C++T ++ + L H+ + H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG 52
Score = 27.6 bits (62), Expect = 5.5
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 11/57 (19%)
Query: 279 FSCHLCGKSFHREQSLRKHLR---------EEENQDQLHCDKCRYKTF-LKSNLIAH 325
C ++F L H+ C + K+F K L+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG-KSFKAKYKLVNH 81
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.8 bits (110), Expect = 8e-07
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 44 KEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQHECEKCPRLFPSSKMLYDHTM 103
K Y C +C+ S+ H+++ C C F S ++ +H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEH-- 61
Query: 104 RSHKTRELFKCHQCSRKYMSKPSLRRHIYATH 135
S + C +C R + S S+ RH H
Sbjct: 62 ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 45.7 bits (107), Expect = 2e-06
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 409 EVYQCYHCLKIFKRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASHAGKTYEC 468
EVYQC C + H R C C F + H + K C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTC 72
Query: 469 ENCSKIFNSKRKLYSHKRKDH 489
C + F S ++ H+ + H
Sbjct: 73 LECMRTFKSSFSIWRHQVEVH 93
Score = 44.1 bits (103), Expect = 8e-06
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQHECEK 87
+ C C L H + C CS + + + H+ E K+ C +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74
Query: 88 CPRLFPSSKMLYDHTMRSHKTRELFKCHQCS 118
C R F SS ++ H + H + S
Sbjct: 75 CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPS 105
Score = 40.3 bits (93), Expect = 2e-04
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 433 VHMRIKYPCTICPREFQNKANLNHHLASHAGKTYECENCSKIFNSKRKLYSHKRKDHMGL 492
V + Y C +C + + H C CS F S H+ K
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEHESK-CEYK 68
Query: 493 TYSCFMCNKTITSKNSLRDHIHLFHGRKKL 522
+C C +T S S+ H H + +
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 39.1 bits (90), Expect = 4e-04
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 211 HKQVHEGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYA 270
V + ++C C+ S H R C CS ++ S + H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSH---ERLCRNAAVCPYCSLRFFSPELKQEHESK 64
Query: 271 NHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQL 307
K +C C ++F S+ +H E NQ+ +
Sbjct: 65 CEYKK---LTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 39.1 bits (90), Expect = 4e-04
Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 25/123 (20%)
Query: 133 ATHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGK 192
A+ + + C LC H R N
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-------------------------A 42
Query: 193 RFCDICSQDYSTKYYLKLHKQVHEGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCH 252
C CS + + + H+ E K+ C EC R F SS ++ H + H +
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Query: 253 QCS 255
S
Sbjct: 103 GPS 105
Score = 31.4 bits (70), Expect = 0.19
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 25 QVEFPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHK 75
+ C YC F L +EH ++ + TC C + + + + + H+
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 27.9 bits (61), Expect = 3.0
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 453 NLNHHLASHAGKTYECENCSKIFNSKRKLYSHKRKDHMGLTYSCFMCNKTITSKNSLRDH 512
+ + Y+C C+ +S + SH+R C C+ S ++H
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEH 61
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 46.7 bits (112), Expect = 9e-07
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQVHEG-KQHECEKCP 89
C K + +L L+ H++ H + Y CD C + +S LK H++ H G K +C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 90 RLFPSSKMLYDHTMRSHKTRELFKCH--QCSRKYMSKPSLRRH 130
R F S L H R+H + F C C +K+ L RH
Sbjct: 74 RKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 43.7 bits (104), Expect = 1e-05
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHECE--ECSRLFPSSKMLYDHTMRSHKTRVLFKCHQC 254
C++ Y +L++H + H G K ++C+ +C R F S L H R H F+C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTC 72
Query: 255 SRKYMSKPSLRRHIYANHINKGVR-FSCHL--CGKSFHREQSLRKHLR 299
RK+ L+ H + G + FSC C K F R L +H
Sbjct: 73 QRKFSRSDHLKTHT---RTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 42.5 bits (101), Expect = 3e-05
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEK--CP 89
C + F R LK H + H + C C + +S +LK H + H G K C C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 90 RLFPSSKMLYDHTMRSH 106
+ F S L H H
Sbjct: 104 KKFARSDELVRH-HNMH 119
Score = 39.0 bits (92), Expect = 5e-04
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 411 YQC--YHCLKIFKRKKDLPRHIMSVHMRI-----KYPCTI--CPREFQNKANLNHHLASH 461
+ C C K + + L +H R Y C C R F L H H
Sbjct: 7 FMCAYPGCNKRYFKLSHL-----QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 462 AG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFM--CNKTITSKNSLRDH--IH 514
G K ++C+ C + F+ L +H R H G +SC C K + L H +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 33.3 bits (77), Expect = 0.043
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 147 CGKSFHREQSLRKHLREEENQ-----DQLHCDKCRYKTF-LKSNLIAH--VHG--KRF-C 195
C K + + L+ H R+ + D C++ F L H H K F C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCER----RFSRSDQLKRHQRRHTGVKPFQC 69
Query: 196 DICSQDYSTKYYLKLHKQVHEG-KQHECE--ECSRLFPSSKMLYDHTMRSH 243
C + +S +LK H + H G K C C + F S L H H
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119
Score = 33.3 bits (77), Expect = 0.057
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 218 KQHECEE--CSRLFPSSKMLYDHTMRSHKTRVLFKCH--QCSRKYMSKPSLRRHIYANHI 273
+ C C++ + L H R H ++C C R++ L+RH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ---RR 60
Query: 274 NKGVR-FSCHLCGKSFHREQSLRKHLR 299
+ GV+ F C C + F R L+ H R
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 32.5 bits (75), Expect = 0.083
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQVH 78
F C C + F R LK HT+TH + ++C C + ++ L H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.1 bits (74), Expect = 0.12
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 36/112 (32%)
Query: 56 YTCD--ICSQDYSTKYYLKLHKQVHEG-KQHECEK--CPRLFPSSKMLYDHTMRSHKTRE 110
+ C C++ Y +L++H + H G K ++C+ C R F S L H R H T
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRH-TGV 64
Query: 111 LFKCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLR 162
KP F C C + F R L+ H R
Sbjct: 65 -------------KP----------------FQCKTCQRKFSRSDHLKTHTR 87
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 45.9 bits (110), Expect = 9e-07
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG-K 464
+ C C K FKR L S H+ I YPC C + F K+++ H H G K
Sbjct: 2 FDCKICGKSFKRSSTL-----STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 465 TYECENCSKIFNSKRKLYSHKR 486
++C+ C K F+ L +H R
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSR 78
Score = 39.3 bits (93), Expect = 2e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMG-LTYSC 496
+ C IC + F+ + L+ HL H+ + Y C+ C K F+ K + H H G + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKC 60
Query: 497 FMCNKTITSKNSLRDH--IH 514
+C K + ++L H H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 34.3 bits (80), Expect = 0.010
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
C CGK F R L H H Y C C + + K +K H +H G K H+C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 89 PRLFPSSKMLYDHTMRSH 106
+ F S L H R H
Sbjct: 64 GKAFSQSSNLITH-SRKH 80
Score = 32.8 bits (76), Expect = 0.038
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQD 201
F C +CGKSF R +L HL +H D Y C C +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-------IHSDTRPYP----------------CQYCGKR 38
Query: 202 YSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
+ K +K H +H G K H+C+ C + F S L H R H
Sbjct: 39 FHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 31.6 bits (73), Expect = 0.10
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 221 ECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINKGVR-F 279
+C+ C + F S L H + H + C C +++ K +++H + I+ G +
Sbjct: 3 DCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTF---IHTGEKPH 58
Query: 280 SCHLCGKSFHREQSLRKHLR 299
C +CGK+F + +L H R
Sbjct: 59 KCQVCGKAFSQSSNLITHSR 78
Score = 31.2 bits (72), Expect = 0.14
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKC 114
+ C IC + + L H +H + + C+ C + F + H H + KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 115 HQCSRKYMSKPSLRRH 130
C + + +L H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 29.7 bits (68), Expect = 0.47
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 465 TYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDH--IH 514
+++C+ C K F L +H H Y C C K K+ ++ H IH
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 29.3 bits (67), Expect = 0.63
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
+PC YCGK F + +K+HT H + + C +C + +S L H + H G
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 27.4 bits (62), Expect = 2.8
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLREEENQDQL 307
F C C + + +L H I+ R + C CGK FH++ ++KH +
Sbjct: 2 FDCKICGKSFKRSSTLSTH---LLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-------I 51
Query: 308 H-------CDKCRYKTF-LKSNLIAH 325
H C C K F SNLI H
Sbjct: 52 HTGEKPHKCQVCG-KAFSQSSNLITH 76
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 45.6 bits (109), Expect = 9e-07
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 434 HMRIK-----YPCTICPREFQNKANLNHHLASHAG---KTYECENCSKIFNSKRKLYSHK 485
R Y C IC F + H+ + C +C + K L H
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 486 RKDHMG 491
RK H
Sbjct: 66 RKQHSY 71
Score = 40.2 bits (95), Expect = 8e-05
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 103 MRSHKTREL-FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKH 160
R+H + E ++C+ C ++ +++ HI + V F C C R+ L H
Sbjct: 7 GRTH-SGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Query: 161 LR 162
LR
Sbjct: 65 LR 66
Score = 39.4 bits (93), Expect = 1e-04
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 453 NLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT--YSCFMCNKTITSKNSL 509
+ +H+G K YEC C F + H + H + C C+ I K+ L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 510 RDHIHLFH 517
H+ H
Sbjct: 62 GVHLRKQH 69
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVRFSCHLCGKSFHREQSLRKHLR 299
++C+ C ++ +++ HI H +F C C R+ L HLR
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVR--YTCDICSQDYSTKYYLKLH-KQVHEG 80
+ C C F + G +K H H + + C C + K L +H ++ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 36.0 bits (84), Expect = 0.002
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 208 LKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVL--FKCHQCSRKYMSKPSL 264
+ H G K +EC C F S + H + T + F C C K L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 265 RRHIYANH 272
H+ H
Sbjct: 62 GVHLRKQH 69
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG---KQHECEECSRLFPSSKMLYDHTMRSH 243
C IC ++ +K+H + C C + L H + H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 35.2 bits (82), Expect = 0.004
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 71 LKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTREL---FKCHQCSRKYMSKPS 126
+ H G K +EC C F S + H + E F C C K
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMH-ILQK-HTENVAKFHCPHCDTVIARKSD 60
Query: 127 LRRHIYATH 135
L H+ H
Sbjct: 61 LGVHLRKQH 69
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVH 434
+ C HC + RK DL H+ H
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQH 69
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 46.7 bits (110), Expect = 1e-06
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 43 LKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQHECEKCPRLFPSSKMLYDH- 101
K + ++ C CS Y T L +H + + + P
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 102 ----TMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATH 135
+++ KC C + S L H+ T
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 45.1 bits (106), Expect = 3e-06
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 203 STKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRS-HKTRVLFKCHQCSRKYMS 260
S+ KL+ + G + C++CS + + L H + H + + K S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 261 KPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLREE 301
KP R + + C CG SF Q L H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 44.0 bits (103), Expect = 1e-05
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 66 STKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRS-HKTRELFKCHQCSRKYMS 123
S+ KL+ + G + C+ C + + L H + H + + + K S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 124 KPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLREE 164
KP R + + C CG SF Q L H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 39.4 bits (91), Expect = 4e-04
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 5/83 (6%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEGKQHECEECSRLFPSSKMLYDH-----TMRSHKTRVLF 249
C CS Y T L +H + + E P + +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 250 KCHQCSRKYMSKPSLRRHIYANH 272
KC C + S L H+
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTK 104
Score = 37.4 bits (86), Expect = 0.002
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 6/85 (7%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVH-----MRIKYPCTICPREFQNKANLNHHLASHAG-K 464
++C C + +L H+ K +L K
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 465 TYECENCSKIFNSKRKLYSHKRKDH 489
+C C F S + L H K
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.1 bits (80), Expect = 0.012
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 11/91 (12%)
Query: 433 VHMRI-----KYPCTICPREFQNKANLNHHLASHAGKTYECENCSKI------FNSKRKL 481
++ I K+ C C + L H+ + KR L
Sbjct: 9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 482 YSHKRKDHMGLTYSCFMCNKTITSKNSLRDH 512
+ K+ C C + S L H
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 34.7 bits (79), Expect = 0.014
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 103 MRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFH---REQSLRK 159
F+C CS Y + L H+ T + R++SL +
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Query: 160 HLREEENQDQLHCDKCRYKTFLKSNLIAH 188
+E+ Q L C C + +L H
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 31.3 bits (70), Expect = 0.27
Identities = 10/57 (17%), Positives = 14/57 (24%)
Query: 18 QHYDKPKQVEFPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLH 74
HY PR L E + C C + + L +H
Sbjct: 43 GHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 45.1 bits (107), Expect = 1e-06
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG----KTYECENCSKIFNSKRKLYSHKRKDHMGLTY 494
C IC + KA+LN H HA + CE C K F + +H+ K H L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 495 SC 496
+
Sbjct: 68 AP 69
Score = 43.2 bits (102), Expect = 6e-06
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKV---RYTCDICSQDYSTKYYLKLHKQV-HEGKQH 83
C CG + L H + H V R+ C+ C + + + H+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 84 ECEKCP 89
++
Sbjct: 68 APQESS 73
Score = 43.2 bits (102), Expect = 8e-06
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
+C C K SL H + F C CGK F + S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYA-THINKGVRFSCHLCGKSFHREQSLRKHLR 162
+C C K SL H +RF C CGK F + S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 40.5 bits (95), Expect = 6e-05
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK----YPCTICPREFQNKANLNHHLASHAGKTY 466
QC C ++K L H H +PC C + F+ ++ H +
Sbjct: 8 LQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 467 ECENCS 472
S
Sbjct: 67 LAPQES 72
Score = 40.1 bits (94), Expect = 9e-05
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG----KQHECEKCPRLFPSSKMLYDHTMRSHKTREL 111
C+IC K L H++ H + CE C + F + H L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH-RSKSHPALL 66
Query: 112 FKCHQCSRK 120
+ S
Sbjct: 67 LAPQESSGP 75
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG----KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFK 250
C+IC K L H++ H + CE C + F + H +L
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH-RSKSHPALLLA 68
Query: 251 CHQCSRK 257
+ S
Sbjct: 69 PQESSGP 75
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDHMGLT----YSCFMCNKTITSKNSLRDHIHLFHGR 519
+CE C K L H+RK H + C C K +S+ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 520 KK 521
Sbjct: 65 LL 66
Score = 35.1 bits (81), Expect = 0.005
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVL---FKCHQCSRKYMSKPSLRRHIYANH 272
+CE C L H R H V F C C +++ S+ H +H
Sbjct: 6 SGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 34.7 bits (80), Expect = 0.007
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 2 KQSLAMHIKKMNREPEQHYDKPKQVEFPCVYCGKIFPRLGLLKEHTKTHHLKVRYTC 58
K SL H +K H + + FPC +CGK F + + H H +
Sbjct: 20 KASLNWHQRK-------HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 33.1 bits (76), Expect = 0.025
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 81 KQHECEKCPRLFPSSKMLYDHTMRSHKTREL---FKCHQCSRKYMSKPSLRRHIYATHIN 137
+CE C L H R H F C C +++ S+ H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHR-SKSHP 63
Query: 138 KGVRFSCHLCGKSF 151
+ G S
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 29.3 bits (66), Expect = 0.52
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 172 CDKCRYKTFLKSNLIAH--VHGKRF------CDICSQDYSTKYYLKLHKQV-HEGKQHEC 222
C+ C + K++L H H + C+ C + + + H+ H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 223 EECS 226
+E S
Sbjct: 70 QESS 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 81/558 (14%), Positives = 158/558 (28%), Gaps = 201/558 (36%)
Query: 46 HTKTHHL-----KVRYTC-DICS-------QDYSTKYYLKLHKQVHEGKQHECE---KCP 89
H HH+ + +Y DI S ++ K + K + + E +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSK 58
Query: 90 RLFPSSKMLYDHTMRSHKTR--ELFKCHQCSRKY---MSK-------PSLRRHIYATHIN 137
+ L+ T+ S + + F Y MS PS+ +Y +
Sbjct: 59 DAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 138 K----GVRFSCHLCGKSFHREQ---SLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVH 190
+ F+ + + R Q LR+ L E L+ +
Sbjct: 118 RLYNDNQVFAKY----NVSRLQPYLKLRQALLE-----------------LRPAKNVLID 156
Query: 191 GKRFC-------DICSQDYSTK-------YYLKLHKQVHEGKQHECEE--------CSRL 228
G D+C Y + ++L L + E ++
Sbjct: 157 GVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNL------KNCNSPETVLEMLQKLLYQI 209
Query: 229 FPSSKMLYDHT----MRSHKTRVLFKCHQCSRKYMSKPSLR--RHIYANHINKGVRFSCH 282
P+ DH+ +R H + + S+ Y + L ++ SC
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 283 LCGKSFHREQSL--------RKHLREEENQDQLHCDKCRYKTFLK------SNLIAHVHG 328
+ + R + + H+ + + L D+ + LK +L V
Sbjct: 268 ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLT 324
Query: 329 YHRLAITLTDITMNHSGIKLECSPDL---KYVKNEIREDLQTIIKIDETKFHQESLNVST 385
+ +++ I L K+ + L TII+ SLNV
Sbjct: 325 TNPRRLSI---------IAESIRDGLATWDNWKHVNCDKLTTIIES--------SLNV-- 365
Query: 386 KQSCQFLLEHLSLKNNITGTQQCEVYQCYHCLKIF------------------------- 420
L+ E + + L +F
Sbjct: 366 ------------LEPA-------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 421 ------------KRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASH--AGKTY 466
K+ K+ I S+++ +K +N+ L+ + H KT+
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKL-------ENEYALHRSIVDHYNIPKTF 459
Query: 467 ECENCSKIFNSKRKLYSH 484
+ ++ + + YSH
Sbjct: 460 DSDDLIPPYLDQY-FYSH 476
Score = 36.0 bits (82), Expect = 0.040
Identities = 56/485 (11%), Positives = 131/485 (27%), Gaps = 159/485 (32%)
Query: 2 KQSLAMHIKKMNREPEQHYDKPKQVEFPCVYCGKIF---------PRLGLLKEHTKTHHL 52
K +A+ + Q + KIF P L L
Sbjct: 163 KTWVALDVCL---------SYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQK----L 205
Query: 53 KVRYTCDICSQ-DYSTKYYLKLHKQVHEGKQHECEKCPRLFPSSKMLYDHTMRSHKTREL 111
+ + S+ D+S+ L++H E ++ K + + ++ + +++ K
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLN-VQNAKAWNA 261
Query: 112 FKCHQC-----SRKYMS-----KPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLR--- 158
F C +R + + HI H + ++
Sbjct: 262 FN-LSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMT-----------LTPDEVKSLLL 308
Query: 159 -------KHLREEENQ----------DQLHCDKCRYKTFLKSNLIAHVHG-KRFCDICSQ 200
+ L E + + + + N + ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 201 DYSTKYYLKLH---KQVH-----------EGKQHECE----ECSRL-------FPSSKML 235
K + +L H + + + + + S+ +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 236 YDHTMRSHKT--------RVLFKCHQCSRKY----MSKPSLRRHIYANHINKGVRFSCHL 283
+ R + + + + + P L ++ Y +HI
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-SHIG--------- 478
Query: 284 CGKSFHREQSLRKHLREEENQDQLHCDKCRYK--TFLKSNLIAHVHGYHRLAITLTDITM 341
H HL+ E+ +++ + + FL+ +
Sbjct: 479 -----H-------HLKNIEHPERMTLFRMVFLDFRFLEQKIRH------------DSTAW 514
Query: 342 NHSGIKLECSPDLKYVKNEIRED---LQTIIKIDETKF---HQESLNVSTKQSCQFLLEH 395
N SG L LK+ K I ++ + ++ F +E+L + +K + L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVN-AILDFLPKIEENL-ICSKYTD---LLR 569
Query: 396 LSLKN 400
++L
Sbjct: 570 IALMA 574
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 45.9 bits (110), Expect = 2e-06
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRI-----KYPCTICPREFQNKANLNHHLASHAG-K 464
+ C C + F + +L +H R Y C IC + F+ + +L H H+ K
Sbjct: 18 FICKFCGRHFTKSYNL-----LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 465 TYECENCSKIFNSKRKLYSHKR 486
++C+ C K F R L HK
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKT 94
Score = 40.5 bits (96), Expect = 1e-04
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 432 SVHMRI-----KYPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHK 485
S ++ C C R F NL H +H + Y C+ C K F + L H+
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Query: 486 RKDHMG-LTYSCFMCNKTITSKNSLRDH--IH 514
H + C C K +L H +H
Sbjct: 66 YI-HSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 38.2 bits (90), Expect = 6e-04
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 207 YLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLR 265
+ + K+ C+ C R F S L H R+H + C C + + + LR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 266 RHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
H +I+ + F C CGK F + ++L H
Sbjct: 63 DH---RYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 36.6 bits (86), Expect = 0.003
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECE 86
F C +CG+ F + L H +TH + YTCDIC + + + +L+ H+ +H K +C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 87 KCPRLFPSSKMLYDHTMRSHKTRELFKCHQCS 118
+C + F S+ L H H + +
Sbjct: 78 ECGKGFCQSRTLAVH-KTLH-MQT--SSPTAA 105
Score = 35.9 bits (84), Expect = 0.004
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 70 YLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLR 128
+ + K+ C+ C R F S L H R+H + C C + + + LR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 129 RHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
H Y I+ + F C CGK F + ++L H
Sbjct: 63 DHRY---IHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 32.8 bits (76), Expect = 0.059
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 25/103 (24%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQD 201
F C CG+ F + +L H R H D+ Y CDIC +
Sbjct: 18 FICKFCGRHFTKSYNLLIHER-------THTDERPYT----------------CDICHKA 54
Query: 202 YSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
+ + +L+ H+ +H K +C+EC + F S+ L H H
Sbjct: 55 FRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLH 96
Score = 27.8 bits (63), Expect = 3.4
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLREEENQDQL 307
F C C R + +L H + R ++C +C K+F R+ LR H +
Sbjct: 18 FICKFCGRHFTKSYNLLIH---ERTHTDERPYTCDICHKAFRRQDHLRDHRY-------I 67
Query: 308 H-------CDKCRYKTF-LKSNLIAH 325
H C +C K F L H
Sbjct: 68 HSKEKPFKCQECG-KGFCQSRTLAVH 92
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 43.7 bits (104), Expect = 1e-05
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHEC--EKCP 89
C K+F +++H TH +V + C C + + LK H+ VH G K +C E C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 90 RLFPSSKMLYDHTMRSHKTRELFKCH--QCSRKYMSKPSLRRHI 131
+ F L H +R H + C C++K+ +L+ HI
Sbjct: 72 KRFSLDFNLRTH-VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 42.9 bits (102), Expect = 2e-05
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 198 CSQDYSTKYYLKLHKQVHEGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCH--QCS 255
C++ + ++ H H + H C EC + F S L H H F+C C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCG 71
Query: 256 RKYMSKPSLRRHIYANHINKGVR-FSCHL--CGKSFHREQSLRKHLR 299
+++ +LR H+ I+ G R + C C K F + +L+ H+
Sbjct: 72 KRFSLDFNLRTHV---RIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 38.3 bits (90), Expect = 0.001
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-YPCTI--CPREFQNKANLNHHLASHAG-KTY 466
+ C C K F L RH VH K + CT C + F NL H+ H G + Y
Sbjct: 35 HVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 467 EC--ENCSKIFNSKRKLYSHKR 486
C + C+K F L SH
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHIL 115
Score = 36.3 bits (85), Expect = 0.004
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 439 YPCTI--CPREFQNKANLNHHLASHAGKTYECENCSKIFNSKRKLYSHKRKDHMGLT-YS 495
C C + F++ + + HL +H + + C C K F KL H+ H G +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLV-HTGEKPFQ 64
Query: 496 CFM--CNKTITSKNSLRDH--IH 514
C C K + +LR H IH
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIH 87
Score = 36.0 bits (84), Expect = 0.007
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 19 HYDKPKQVEFPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQ 76
H + C CGK F LK H H + + C C + +S + L+ H +
Sbjct: 30 HGPRV----HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Query: 77 VHEG-KQHEC--EKCPRLFPSSKMLYDHTMRSH 106
+H G + + C + C + F S L H + +H
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTH 117
Score = 30.9 bits (71), Expect = 0.38
Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 38/141 (26%)
Query: 112 FKC--HQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQ 169
C C++ + ++R+H++ TH + C CGK+F L++H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLH-THGPRV--HVCAECGKAFVESSKLKRHQL------- 55
Query: 170 LHCD----KCRYKTFLKSNLIAHVHGKRFCDICSQDYSTKYYLKLHKQVHEG-KQHEC-- 222
+H +C ++ C + +S + L+ H ++H G + + C
Sbjct: 56 VHTGEKPFQCTFEG------------------CGKRFSLDFNLRTHVRIHTGDRPYVCPF 97
Query: 223 EECSRLFPSSKMLYDHTMRSH 243
+ C++ F S L H + +H
Sbjct: 98 DGCNKKFAQSTNLKSH-ILTH 117
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 44.5 bits (106), Expect = 2e-05
Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 42/214 (19%)
Query: 46 HTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQVHEG-KQHECE--KCPRLFPSSKMLYD 100
+ RY C C Y+ + L+ H H G K C+ C + F S L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 101 HTMRSHKTRELFKCHQ--CSRKYMSKPSLRRHIYATHINKGVRFSCHL--CGKSFHREQS 156
H +H + F C C ++ +K ++++H H K + CH CGK+F +
Sbjct: 63 H-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 157 LRKHLREEENQ-----DQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQDYSTKYYLKLH 211
L+ H Q CDK +S LK H
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKR--------------------------FSLPSRLKRH 155
Query: 212 KQVHEGKQHE-CEECSRLFPSSKMLYDHTMRSHK 244
++VH G + + CS + + + H H+
Sbjct: 156 EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 39.9 bits (94), Expect = 8e-04
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 33 CGKIFPRLGLLKEHTKTHHL--KVRYTCDI--CSQDYSTKYYLKLHKQVHEG-KQHEC-- 85
C F +K+H H Y C C + + LK+H+ H +EC
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 86 EKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATH 135
E C + F L H + H K CS + +H+ H
Sbjct: 140 EGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 38.7 bits (91), Expect = 0.002
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHECEE--CSRLFPSSKMLYDHTMRSHKTRVLFKCHQ- 253
C Y+ + L+ H H G K C+E C + F S L H +H F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSD 78
Query: 254 -CSRKYMSKPSLRRHIYANHINKGVRFSCHL--CGKSFHREQSLRKHLR 299
C ++ +K ++++H H K + CH CGK+F + L+ H
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Score = 35.6 bits (83), Expect = 0.017
Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 25/123 (20%)
Query: 411 YQC--YHCLKIFKRKKDLPRHIMSVHMRI-----KYPCT--ICPREFQNKANLNHHLASH 461
Y C C + + L H+ +PC C + F + +L H +H
Sbjct: 13 YICSFADCGAAYNKNWKL-----QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Query: 462 AG-KTYECE--NCSKIFNSKRKLYSHKRKDHMG---LTYSCFM--CNKTITSKNSLRDH- 512
G K + C+ C F +K + H + Y C C K N L+ H
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 513 -IH 514
H
Sbjct: 127 FSH 129
Score = 35.6 bits (83), Expect = 0.019
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCD--ICSQDYSTKYYLKLHKQVHEG---KQHEC-- 85
C K F L L H+ TH + +TCD C ++TK +K H + C
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 86 EKCPRLFPSSKMLYDHTMRSHKTRELFKCHQ--CSRKYMSKPSLRRHIYATHINKGVR-- 141
E C + F L H SH + ++C C +++ L+RH H +
Sbjct: 110 ENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKD 167
Query: 142 FSCHLCGKSFHREQSLRKHLRE 163
SC GK++ KH+ E
Sbjct: 168 DSCSFVGKTW---TLYLKHVAE 186
Score = 32.2 bits (74), Expect = 0.24
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 411 YQCY--HCLKIFKRKKDLPRHIMSVHMRI-----KYPCT--ICPREFQNKANLNHHLASH 461
Y C+ +C K FK+ L VH Y C C + F + L H H
Sbjct: 105 YVCHFENCGKAFKKHNQL-----KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 462 AG-KTYECENCSKIFNSKRKLYSHKRKDH 489
AG + ++CS + + H + H
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 27.6 bits (62), Expect = 7.1
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 457 HLASHAG-KTYECEN--CSKIFNSKRKLYSHKRKDHMGLT-YSC--FMCNKTITSKNSLR 510
A K Y C C +N KL +H K H G + C C K TS + L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 511 DH--IH 514
H H
Sbjct: 62 RHSLTH 67
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 41.7 bits (99), Expect = 2e-05
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRI---------KYPCTICPREFQNKANLNHHLASH 461
Y C HC K F++K+ L +H + + C+ C + F + + H +
Sbjct: 16 YACSHCDKTFRQKQLL-----DMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 462 AG-KTYECENCSKIF 475
AG E EN
Sbjct: 71 AGPDGVEGENSGPSS 85
Score = 37.1 bits (87), Expect = 0.001
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVR----YTCDICSQDYSTKYYLKLHKQVHEG-KQ 82
+ C +C K F + LL H K +H + C C + ++ + + H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 83 HECEKC 88
E E
Sbjct: 76 VEGENS 81
Score = 37.1 bits (87), Expect = 0.001
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 12/81 (14%)
Query: 433 VHMRIK-----YPCTICPREFQNKANLNHHLASHAG-----KTYECENCSKIFNSKRKLY 482
R Y C+ C + F+ K L+ H + + C C K F + +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 483 SHKRKDHMGLT-YSCFMCNKT 502
H G +
Sbjct: 65 RHADN-CAGPDGVEGENSGPS 84
Score = 36.0 bits (84), Expect = 0.003
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 453 NLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-----YSCFMCNKTITSK 506
+ +H G K Y C +C K F K+ L H ++ + + C C KT T +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVPAAFVCSKCGKTFTRR 60
Query: 507 NSLRDH--IH 514
N++ H
Sbjct: 61 NTMARHADNC 70
Score = 32.9 bits (76), Expect = 0.037
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 28/93 (30%)
Query: 142 FSCHLCGKSFHREQSLRKHLR----EEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDI 197
++C C K+F ++Q L H + C KC GK F
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC---------------GKTF--- 57
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHECEECSRLF 229
+ + + H G E E
Sbjct: 58 -----TRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 32.5 bits (75), Expect = 0.045
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 208 LKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVL----FKCHQCSRKYMSKP 262
+ H G K + C C + F ++L H + + F C +C + + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 263 SLRRHIYANHINKGVR-FSCHLCGKSF 288
++ RH G G S
Sbjct: 62 TMARH---ADNCAGPDGVEGENSGPSS 85
Score = 31.7 bits (73), Expect = 0.089
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 71 LKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTREL-----FKCHQCSRKYMSK 124
+ H G K + C C + F ++L H + + F C +C + + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRY-HDPNFVPAAFVCSKCGKTFTRR 60
Query: 125 PSLRRHIYATHI-NKGVRFSCHLCGKSF 151
++ RH G G S
Sbjct: 61 NTMARH-ADNCAGPDG--VEGENSGPSS 85
Score = 31.0 bits (71), Expect = 0.16
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 279 FSCHLCGKSFHREQSLRKHLR----EEENQDQLHCDKCRYKTF-LKSNLIAH 325
++C C K+F ++Q L H + C KC KTF ++ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG-KTFTRRNTMARH 66
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 40.6 bits (96), Expect = 5e-05
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
++C CSR Y + RH Y T + V+ + C C K F R+ ++ H++
Sbjct: 11 YRCKVCSRVYTHISNFCRH-YVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 39.1 bits (92), Expect = 2e-04
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
++C CSR Y + RH Y + V+ + C C K F R+ ++ H++
Sbjct: 11 YRCKVCSRVYTHISNFCRH-YVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 37.1 bits (87), Expect = 7e-04
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK--YPCTICPREFQNKANLNHHLASHAG 463
Y+C C +++ + RH ++ H R YPC C +EF K N+ H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKT-HHLKVR-YTCDICSQDYSTKYYLKLHKQVHEG 80
+ C C +++ + H T H V+ Y C C ++++ K + H ++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 32.9 bits (76), Expect = 0.021
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 464 KTYECENCSKIFNSKRKLYSHKR-KDHMGL-TYSCFMCNKTITSKNSLRDHIHLFHG 518
TY C+ CS+++ H + Y C C K T K+++ H+ + H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 29.8 bits (68), Expect = 0.29
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 78 HEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRE-LFKCHQCSRKYMSKPSLRRHIYATH 135
EG + C+ C R++ H + SHK ++ C C +++ K ++ H+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 195 CDICSQDYSTKYYLKLHKQV--HEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
C +CS+ Y+ H K + C C + F + H ++
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH-VKII 63
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 23/77 (29%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRF-CDICSQ 200
+ C +C + + + +H + K + C C +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYV----------------------TSHKRNVKVYPCPFCFK 48
Query: 201 DYSTKYYLKLHKQVHEG 217
+++ K + H ++
Sbjct: 49 EFTRKDNMTAHVKIIHK 65
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 41.1 bits (95), Expect = 7e-05
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 74 HKQVHEGKQHECEKCPRLFPSS-KMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIY 132
+ +HE + C C + + L H K ++ KC C +++ SK L H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 133 ATHINK 138
A H K
Sbjct: 76 AEHSAK 81
Score = 38.8 bits (89), Expect = 4e-04
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 211 HKQVHEGKQHECEECSRLFPSS-KMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIY 269
+ +HE + C C+ + + L H K + KC C +++ SK L H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 270 ANHINK 275
A H K
Sbjct: 76 AEHSAK 81
Score = 30.7 bits (68), Expect = 0.29
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 113 KCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQ 169
C+ +RK + L++H+ + C C K F + L H E +
Sbjct: 29 TCNVVTRKTLV--GLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 30.3 bits (67), Expect = 0.38
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 250 KCHQCSRKYMSKPSLRRHIYANHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQ 306
C+ +RK + L++H+ + C C K F + L H E +
Sbjct: 29 TCNVVTRKTLV--GLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 28.0 bits (61), Expect = 3.1
Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 457 HLASHAGKTYECENCSKIF-NSKRKLYSHKRKDHMGL-TYSCFMCNKTITSKNSLRDHIH 514
A H C C+ + + L H C C K SK L H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 515 LFHGRKKLIVE 525
H K E
Sbjct: 76 AEHSAKPSDAE 86
Score = 26.4 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 409 EVYQCYHCLKIFKRKKDLPRHIMSVH 434
+ +C HC K FK K L H M+ H
Sbjct: 53 DALKCQHCRKQFKSKAGLNYHTMAEH 78
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 40.1 bits (95), Expect = 2e-04
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-YPCTICPREFQNKANLNHHLASHAG-KTYEC 468
Y C C K FK K L H M +H IK Y C IC + F + + + H+ + K+YE
Sbjct: 38 YGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEA 94
Query: 469 ENCSKIFNSKRKLYS 483
+ S
Sbjct: 95 AKAEQNTTEASGPSS 109
Score = 40.1 bits (95), Expect = 2e-04
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSC 496
YPC C + F +K+ + H++ H G + Y C C K F K L H + H G+ Y C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYEC 68
Query: 497 FMCNKTITSKNSLRDHIH 514
+C K ++S H+
Sbjct: 69 NICAKRFMWRDSFHRHVT 86
Score = 37.4 bits (88), Expect = 0.002
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSR 256
C + ++ K H +H G + + C C + F L H M+ H ++C+ C++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNICAK 73
Query: 257 KYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLR 295
++M + S RH+ + + + ++
Sbjct: 74 RFMWRDSFHRHVTS-----CTKSYEAAKAEQNTTEASGPS 108
Score = 34.0 bits (79), Expect = 0.024
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRL 91
CGK F H H Y C +C + + K++L H ++H G K +EC C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 92 FPSSKMLYDHTMRSHKTRELFKCHQC 117
F + ++ +
Sbjct: 75 FMWRDSF---HRHVTSCTKSYEAAKA 97
Score = 30.1 bits (69), Expect = 0.58
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
C CGK F L H K H Y C+IC++ + + H+ V K +E K
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDS--FHRHVTSCTKSYEAAKA 97
Query: 89 PRLF 92
+
Sbjct: 98 EQNT 101
Score = 27.0 bits (61), Expect = 6.9
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 40/96 (41%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTFLKSNLIAHVHGKRF 194
+ C +CGK F + L H++ +H C+ C KRF
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMK-------IHTGIKPYECNIC---------------AKRF 75
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLF 229
S H+ V K +E + +
Sbjct: 76 MWRDS----------FHRHVTSCTKSYEAAKAEQNT 101
Score = 26.6 bits (60), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 16/57 (28%)
Query: 279 FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTF-LKSNLIAHVH 327
+ C +CGK F + L H++ +H C+ C K F + + HV
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMK-------IHTGIKPYECNICA-KRFMWRDSFHRHVT 86
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 37.5 bits (88), Expect = 7e-04
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRK 487
C+ C +KA L H H + ++C CS L H +K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-----YPCTICPREFQNKANLNHHLASHAG-K 464
+C C K L +H RI + C C + + +NL+ H+ G
Sbjct: 10 EKCSECSYSCSSKAAL-----RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Query: 465 TYEC 468
+
Sbjct: 65 SGPS 68
Score = 33.2 bits (77), Expect = 0.018
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 459 ASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMG-LTYSCFMCNKTITSKNSLRDHIHLF 516
+S + +C CS +SK L H+R H + C C+ ++L H+ F
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Query: 517 HGRK 520
HG
Sbjct: 61 HGDM 64
Score = 32.5 bits (75), Expect = 0.034
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
KC +CS SK +LR H H R F C+ C + +L KH++
Sbjct: 10 EKCSECSYSCSSKAALRIH-ERIHC--TDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 31.7 bits (73), Expect = 0.067
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
KC +CS SK +LR H I+ R F C+ C + +L KH++
Sbjct: 10 EKCSECSYSCSSKAALRIHE---RIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 30.2 bits (69), Expect = 0.21
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 142 FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTFLKSNLIAH 188
C C S + +LR H R +H C+ C + T SNL H
Sbjct: 10 EKCSECSYSCSSKAALRIHER-------IHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 30.2 bits (69), Expect = 0.21
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 279 FSCHLCGKSFHREQSLRKHLREEENQDQLH-------CDKCRYKTFLKSNLIAH 325
C C S + +LR H R +H C+ C + T SNL H
Sbjct: 10 EKCSECSYSCSSKAALRIHER-------IHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 29.8 bits (68), Expect = 0.32
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
C C L+ H + H + C+ CS D L H + G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 29.8 bits (68), Expect = 0.34
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 214 VHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRH 267
+C ECS S L H R H T FKC+ CS +L +H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 28.6 bits (65), Expect = 0.72
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
C CS S+K L++H+++H + +C CS L H M+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 27.8 bits (63), Expect = 1.3
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSH 106
C CS S+K L++H+++H + +C C L H M+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 37.5 bits (88), Expect = 7e-04
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 411 YQCYH--CLKIFKRKKDLPRHIMSVHMRIK-YPCT--ICPREFQNKANLNHHLASHAG-K 464
C C +IF ++ L H H+ K + C C + F K +L H+ H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 465 TYECENCSKIF 475
Y CE
Sbjct: 68 DYICEFSGPSS 78
Score = 34.4 bits (80), Expect = 0.010
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 28 FPCVY--CGKIFPRLGLLKEHTKTHHLKVR-YTCD--ICSQDYSTKYYLKLHKQVHEG-K 81
PC + CG+IF L H K H+ + ++C C + ++ K +LK H ++H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 82 QHECEKC 88
+ CE
Sbjct: 68 DYICEFS 74
Score = 31.0 bits (71), Expect = 0.13
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 29/94 (30%)
Query: 142 FSCHL--CGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRF-CD-- 196
C CG+ F Q L H + H+H K F C
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKK-----------------------YQHIHQKSFSCPEP 44
Query: 197 ICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLF 229
C + ++ K +LK H ++H + + CE
Sbjct: 45 ACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 30.2 bits (69), Expect = 0.27
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 112 FKC--HQCSRKYMSKPSLRRHIYATHINKGVR-FSC--HLCGKSFHREQSLRKHLR 162
C C R + ++ L H HI + FSC CGKSF+ ++ L++H++
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHI--HQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 30.2 bits (69), Expect = 0.29
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 464 KTYEC--ENCSKIFNSKRKLYSHKRKDHMG-LTYSC--FMCNKTITSKNSLRDHIH 514
C C +IF++++ L HK+ H+ ++SC C K+ K L++H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 28.3 bits (64), Expect = 1.4
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 221 ECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQ--CSRKYMSKPSLRRHIYANHINKGVR 278
+ C R+F + + L H H + F C + C + + K L+ H+ ++ R
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM---KLHSDTR 67
Query: 279 -FSCHLCGKSF 288
+ C G S
Sbjct: 68 DYICEFSGPSS 78
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMG 491
+ C +C R F + +L H SH K Y C C++ F + L H +K H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.9 bits (71), Expect = 0.091
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
C++C++ ++ + +LK H + H K + C C+R F +L H + H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 27.8 bits (63), Expect = 1.3
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
F C C+R + + L+RH + + + C LC ++F R L +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHY---RSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 27.5 bits (62), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQ-VHEG 80
F C C + F R LK H ++H + Y C +C++ ++ + L H Q +H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 27.5 bits (62), Expect = 1.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRH 267
+ CE C+R F + L H RSH + C C+R + + L RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 27.1 bits (61), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRDHIHLFH 517
+++ CE C++ F + L H R H Y C +CN+ T ++ L H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 27.1 bits (61), Expect = 2.5
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 81 KQHECEKCPRLFPSSKMLYDHTMRSHKTREL-FKCHQCSRKYMSKPSLRRHIYATH 135
+ CE C R F + L H RSH T E + C C+R + + L RH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 25.1 bits (56), Expect = 9.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 279 FSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTF-LKSNLIAHVHGYH 330
F C +C ++F R++ L++H R N+ C C + F + LI H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN-RAFTRRDLLIRHAQKIH 54
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 37.2 bits (87), Expect = 0.002
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 32 YCGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
C K++ + LK H +TH + Y C C ++ L H + H G K +C C
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 89 PRLFPSSKMLYDHTMRSH 106
R F S L H M+ H
Sbjct: 82 NRSFSRSDHLALH-MKRH 98
Score = 35.7 bits (83), Expect = 0.005
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 81 KQHECEK--CPRLFPSSKMLYDHTMRSHKTRELFKCH--QCSRKYMSKPSLRRHIYATHI 136
+ H C+ C +++ S L H +R+H + +KC C ++ L RH Y H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKH- 70
Query: 137 NKGVR-FSCHLCGKSFHREQSLRKHLR 162
G + F C +C +SF R L H++
Sbjct: 71 -TGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 35.7 bits (83), Expect = 0.006
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 28 FPCVY--CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHE 79
+ C + C F R L H + H + C +C++ +S +L LH + H+
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 35.3 bits (82), Expect = 0.007
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHEC--EECSRLFPSSKMLYDHTMRSHKTRVLFKCHQC 254
C++ Y+ +LK H + H G K ++C E C F S L H R H F+C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGVC 81
Query: 255 SRKYMSKPSLRRHI 268
+R + L H+
Sbjct: 82 NRSFSRSDHLALHM 95
Score = 34.9 bits (81), Expect = 0.011
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 218 KQHECE--ECSRLFPSSKMLYDHTMRSHKTRVLFKCH--QCSRKYMSKPSLRRHIYANHI 273
+ H C+ C++++ S L H +R+H +KC C ++ L RH
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHY---RK 69
Query: 274 NKGVR-FSCHLCGKSFHREQSLRKHLR 299
+ G + F C +C +SF R L H++
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 32.2 bits (74), Expect = 0.078
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 434 HMRIKYPCTI--CPREFQNKANLNHHLASHAG-KTYEC--ENCSKIFNSKRKLYSHKRKD 488
RI + C C + + ++L HL +H G K Y+C E C F +L H RK
Sbjct: 12 KRRI-HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK- 69
Query: 489 HMGLT-YSCFMCNKTITSKNSLRDHI 513
H G + C +CN++ + + L H+
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 28.7 bits (65), Expect = 1.2
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 415 HCLKIFKRKKDLPRHIMSVHMRIK-YPCTI--CPREFQNKANLNHHLASHAG-KTYECEN 470
C K++ + L H + H K Y CT C F L H H G K ++C
Sbjct: 22 GCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 471 CSKIFNSKRKLYSHKR 486
C++ F+ L H +
Sbjct: 81 CNRSFSRSDHLALHMK 96
Score = 27.6 bits (62), Expect = 3.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 411 YQCYH--CLKIFKRKKDLPRHIMSVHMRIK-YPCTICPREFQNKANLNHHLASH 461
Y+C C F R +L RH H K + C +C R F +L H+ H
Sbjct: 46 YKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 37.6 bits (86), Expect = 0.002
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 61 CSQDYSTKYYLKLHKQVHEGKQH------ECEKCPRLFPSSKMLYDHTMRSHKTRELFKC 114
+ + + H+ E K+ P+L S LY + K F C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRL--LASKAISQFVC 77
Query: 115 HQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLREEEN 166
C + S SL++HI T K C +C K F S H+ ++ N
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTEHTK----VCPVCKKEFTSTDSALDHVCKKHN 125
Score = 36.5 bits (83), Expect = 0.005
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 2/107 (1%)
Query: 413 CYHCLKIFKRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASHAGKTYECENCS 472
+ L+ KR L + I P+ + L LAS A + C C
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCL 81
Query: 473 KIFNSKRKLYSHKRKDHMGLTYSCFMCNKTITSKNSLRDHIHLFHGR 519
F+S L H R T C +C K TS +S DH+ H
Sbjct: 82 MPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 34.9 bits (79), Expect = 0.019
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 142 FSCHLCGKSFHREQSL---RKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRF-CDI 197
H+ + R L +K L + +H + ++ L+A +F C +
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 198 CSQDYSTKYYLKLHKQVHEGKQHECEECSRLFPSSKMLYDHTMRSH 243
C +S+ LK H + E C C + F S+ DH + H
Sbjct: 80 CLMPFSSSVSLKQHIRYTE-HTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 33.4 bits (75), Expect = 0.050
Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 3/113 (2%)
Query: 23 PKQVEFPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQ 82
+ R L K + T Q YL Q
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ 74
Query: 83 HECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATH 135
C C F SS L H + T+ C C +++ S S H+ H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCKKEFTSTDSALDHVCKKH 124
Score = 33.0 bits (74), Expect = 0.076
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 2/118 (1%)
Query: 344 SGIKLECSPDLKYVKNEIREDLQTIIKIDETKFHQESLNVSTKQSCQFLLEHLSLKNNIT 403
SG K S + E+L+ ++ + V T LL+ S +
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 404 GTQQCEVYQCYHCLKIFKRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASH 461
++ + C CL F L +HI C +C +EF + + H+
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKK 123
Score = 30.3 bits (67), Expect = 0.58
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 276 GVRFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGYHRLAIT 335
+F C LC F SL++H+R E+ C C+ + + + HV H + ++
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHNICVS 129
Score = 29.5 bits (65), Expect = 1.1
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 104 RSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLRE 163
+ R + K + + + + S + A+ +F C LC F SL++H+R
Sbjct: 39 QKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA--ISQFVCPLCLMPFSSSVSLKQHIRY 96
Query: 164 EENQDQLHCDKCRYKTFLKSNLIAHV 189
E+ C C+ + + + HV
Sbjct: 97 TEHTKV--CPVCKKEFTSTDSALDHV 120
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 35.9 bits (84), Expect = 0.002
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
Y C C + F + L H H G K Y+C C K F+ L +H+R
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 31.7 bits (73), Expect = 0.071
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 454 LNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLRD 511
+ H+G K Y C C K F+ L H+R H G Y C C K + + L +
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLIN 60
Query: 512 H--IH 514
H IH
Sbjct: 61 HQRIH 65
Score = 28.6 bits (65), Expect = 0.76
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
CV CGK F R +L +H + H + Y C C + +S L H+++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 27.8 bits (63), Expect = 1.8
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 208 LKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRR 266
+H G K + C EC + F S +L H R H +KC +C + + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 267 H 267
H
Sbjct: 61 H 61
Score = 25.9 bits (58), Expect = 7.9
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
+ C +C + + L +H ++ G + + C CGK+F + L H R
Sbjct: 15 YGCVECGKAFSRSSILVQH---QRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 36.1 bits (84), Expect = 0.002
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 56 YTCDI--CSQDYSTKYYLKLHKQVHEG-KQHEC--EKCPRLFPSSKMLYDHTMRSHKTRE 110
Y C C + + LK+H+ H +EC E C + F L H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYP 60
Query: 111 LFKCHQCSRKYMSKPSLRRHIYATH 135
K CS + +H+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.7 bits (83), Expect = 0.004
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCD--ICSQDYSTKYYLKLHKQVHEG-KQHECEKCP 89
CGK F + LK H +H ++ Y C C + +S LK H++VH G + + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 90 RLFPSSKMLYDHTMRSH 106
+ + + H H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 34.9 bits (81), Expect = 0.008
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 198 CSQDYSTKYYLKLHKQVHEG-KQHEC--EECSRLFPSSKMLYDHTMRSHKTRVLFKCHQC 254
C + + LK+H+ H +EC E C + F L H + H K C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSC 67
Query: 255 SRKYMSKPSLRRHIYANH 272
S + +H+ H
Sbjct: 68 SFVGKTWTLYLKHVAECH 85
Score = 31.1 bits (71), Expect = 0.14
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 410 VYQCYH--CLKIFKRKKDLPRHIMSVHMRIK-YPCT--ICPREFQNKANLNHHLASHAG- 463
+Y C+ C K FK+ L H H + Y C C + F + L H HAG
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDH 489
+ ++CS + + H + H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 29.9 bits (68), Expect = 0.45
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 26/100 (26%)
Query: 147 CGKSFHREQSLRKHLREEENQDQLHCD--KCRYKTFLKSNLIAHVHGKRFCDICSQDYST 204
CGK+F + L+ H Q C C KRF S
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGC---------------DKRF--------SL 45
Query: 205 KYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
LK H++VH G + + CS + + + H H
Sbjct: 46 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 35.5 bits (83), Expect = 0.003
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
Y C C + F + ++L+ H +H G K Y+C+ C K F + L H R
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 27.8 bits (63), Expect = 1.7
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 208 LKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRR 266
+ ++++C+EC + F S L H R+H +KC +C + ++ + L
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 267 H 267
H
Sbjct: 65 H 65
Score = 27.0 bits (61), Expect = 3.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
C CGK F L +H +TH + Y CD C + + + +L H +VH G
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 26.3 bits (59), Expect = 5.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDH 238
CD C + +S L H++ H G K ++C+EC + F L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 25.9 bits (58), Expect = 9.0
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 71 LKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRR 129
+ ++++C++C + F S L H R+H + +KC +C + ++ + L
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 130 H 130
H
Sbjct: 65 H 65
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 36.0 bits (82), Expect = 0.004
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 72 KLHKQVHEGKQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHI 131
+ + ++ + C C + + M + K +E+F CH C ++ S ++ H+
Sbjct: 24 QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHV 82
Query: 132 YATHINK 138
A H +
Sbjct: 83 MANHNSL 89
Score = 35.6 bits (81), Expect = 0.005
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 209 KLHKQVHEGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHI 268
+ + ++ + C C + + M + K + F CH C ++ S ++ H+
Sbjct: 24 QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHV 82
Query: 269 YANHINK 275
ANH +
Sbjct: 83 MANHNSL 89
Score = 29.1 bits (64), Expect = 1.0
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 53 KVRYTCDICSQ-DYSTKYYLKLHKQVHEGKQHECEKCPRLFPSSKMLYDHTMRSHKTREL 111
K +C C T LK H + + + C C + S + H M +H +
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 112 FK 113
Sbjct: 92 GP 93
Score = 27.9 bits (61), Expect = 2.7
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 185 LIAHVHGKRFCDICSQ-DYSTKYYLKLHKQVHEGKQHECEECSRLFPSSKMLYDHTMRSH 243
L G C C T LK H + + + C C + S + H M +H
Sbjct: 27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Query: 244 KTRVLFK 250
+
Sbjct: 87 NSLPSGP 93
Score = 27.5 bits (60), Expect = 3.6
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 113 KCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLREEEN 166
C RK + L++H+ F+CH CGK ++ H+ N
Sbjct: 39 TCQAVGRKTIE--GLKKHMENCKQEM---FTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 27.5 bits (60), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 18 QHYDKPKQVEFPCVYCGKIFPRLGLLKEHTKTHH 51
+H + KQ F C +CGK L +K H +H
Sbjct: 53 KHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 26.4 bits (57), Expect = 8.0
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 250 KCHQCSRKYMSKPSLRRHIYANHINKGVRFSCHLCGKSFHREQSLRKHLREEEN 303
C RK + L++H+ K F+CH CGK ++ H+ N
Sbjct: 39 TCQAVGRKTIE--GLKKHM---ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 26.4 bits (57), Expect = 9.7
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 433 VHMRIKYPCTICPR-EFQNKANLNHHLASHAGKTYECENCSKIFNSKRKLYSHKRKDH 489
+ + C C + L H+ + + + C +C K S + H +H
Sbjct: 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 34.7 bits (81), Expect = 0.005
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 453 NLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMGLT-YSCFMCNKTITSKNSLR 510
+ +HH K Y+C+ C F K L SHK H G Y C +C +L+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLK 62
Query: 511 DH--IH 514
H IH
Sbjct: 63 THTRIH 68
Score = 32.0 bits (74), Expect = 0.059
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 207 YLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLR 265
+ H + K ++C+ C F L H H ++C+ C ++ +L+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 266 RH 267
H
Sbjct: 63 TH 64
Score = 31.7 bits (73), Expect = 0.073
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
C C F G L H H + Y C+IC ++ LK H ++H G
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 30.1 bits (69), Expect = 0.26
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 29/77 (37%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASHAG-KTYECE 469
Y+C C F+ K +L + H + H G K Y C
Sbjct: 18 YKCDRCQASFRYKGNL-----ASHKTV-----------------------HTGEKPYRCN 49
Query: 470 NCSKIFNSKRKLYSHKR 486
C FN L +H R
Sbjct: 50 ICGAQFNRPANLKTHTR 66
Score = 27.4 bits (62), Expect = 2.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
+KC +C + K +L H ++ G + + C++CG F+R +L+ H R
Sbjct: 18 YKCDRCQASFRYKGNLASH---KTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 34.6 bits (80), Expect = 0.006
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 33 CGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVH 78
C + F R L H + H + + C IC +++S +L H + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.8 bits (65), Expect = 0.68
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 411 YQCYH--CLKIFKRKKDLPRHIMSVHMRIK-YPCTICPREFQNKANLNHHLASH 461
Y C C + F R +L RH + +H K + C IC R F +L H+ +H
Sbjct: 20 YACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.8 bits (65), Expect = 0.77
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTH 50
F C C + F R L H +TH
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.0 bits (63), Expect = 1.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 112 FKCH--QCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSFHREQSLRKHLR 162
+ C C R++ L RH H G + F C +C ++F R L H+R
Sbjct: 20 YACPVESCDRRFSRSDELTRH-IRIH--TGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 27.3 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 208 LKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
L H ++H G K +C C R F S L H +R+H
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTH 72
Score = 27.3 bits (61), Expect = 2.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 249 FKCH--QCSRKYMSKPSLRRHIYANHINKGVR-FSCHLCGKSFHREQSLRKHLR 299
+ C C R++ L RHI I+ G + F C +C ++F R L H+R
Sbjct: 20 YACPVESCDRRFSRSDELTRHI---RIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 27.3 bits (61), Expect = 2.7
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 39 RLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKM 97
+ L + + C + +S L H ++H G K +C C R F S
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 98 LYDHTMRSH 106
L H +R+H
Sbjct: 65 LTTH-IRTH 72
Score = 26.9 bits (60), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 439 YPCTI--CPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
Y C + C R F L H+ H G K ++C C + F+ L +H R
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 35.3 bits (81), Expect = 0.006
Identities = 16/85 (18%), Positives = 21/85 (24%), Gaps = 22/85 (25%)
Query: 215 HEGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHIN 274
+ C R F + L H H H C +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE----------------- 63
Query: 275 KGVRFSCHLCGKSFHREQSLRKHLR 299
C GKSF + L H+R
Sbjct: 64 -----ECPREGKSFKAKYKLVNHIR 83
Score = 34.6 bits (79), Expect = 0.012
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 464 KTYECENCSKIFNSKRKLYSHKRKDHMGLT---------YSCFMCNKTITSKNSLRDHIH 514
+ ++C + F++ +L +H +H+G C K+ +K L +HI
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Score = 33.8 bits (77), Expect = 0.021
Identities = 16/85 (18%), Positives = 21/85 (24%), Gaps = 22/85 (25%)
Query: 78 HEGKQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHIN 137
+ C R F + L H H H C +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE----------------- 63
Query: 138 KGVRFSCHLCGKSFHREQSLRKHLR 162
C GKSF + L H+R
Sbjct: 64 -----ECPREGKSFKAKYKLVNHIR 83
Score = 32.2 bits (73), Expect = 0.079
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 23 PKQVEFPCVYCGKIFPRLGLLKEHTKTHHLKVR---------YTCDICSQDYSTKYYLKL 73
Q+ P C + F + L H H+ C + + KY L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 74 HKQVHEG-KQHEC 85
H +VH G K
Sbjct: 81 HIRVHTGEKSGPS 93
Score = 31.1 bits (70), Expect = 0.20
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIKYP---------CTICPREFQNKANLNHHLASH 461
C + F +L H+ H+ C + F+ K L +H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 462 AG-KTYEC 468
G K+
Sbjct: 86 TGEKSGPS 93
Score = 26.1 bits (57), Expect = 9.6
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 17/83 (20%)
Query: 142 FSCHLCGKSFHREQSLRKHLREE-ENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQ 200
C ++F L H+ E + + C ++ C +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE---------------CPREGK 70
Query: 201 DYSTKYYLKLHKQVHEG-KQHEC 222
+ KY L H +VH G K
Sbjct: 71 SFKAKYKLVNHIRVHTGEKSGPS 93
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 35.2 bits (82), Expect = 0.006
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQVHEG-KQHE 84
CGK + + LK H +TH + Y CD C ++ L H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 85 CEKCPRLFPSSKMLYDHTMRSH 106
C+KC R F S L H M+ H
Sbjct: 68 CQKCDRAFSRSDHLALH-MKRH 88
Score = 34.8 bits (81), Expect = 0.009
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 434 HMRIK-YPCTICPREFQNKANLNHHLASHAG-KTYEC--ENCSKIFNSKRKLYSHKRKDH 489
C + + ++L HL +H G K Y C + C F +L H RK H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-H 60
Query: 490 MGLT-YSCFMCNKTITSKNSLRDH--IHL 515
G + C C++ + + L H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 32.9 bits (76), Expect = 0.034
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 81 KQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCH--QCSRKYMSKPSLRRHIYATHINK 138
+ C + + S L H +R+H + + C C K+ L RH Y H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKH--T 61
Query: 139 GVR-FSCHLCGKSFHREQSLRKHLR 162
G R F C C ++F R L H++
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 32.9 bits (76), Expect = 0.034
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 218 KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCH--QCSRKYMSKPSLRRHIYANHINK 275
+ C + + S L H +R+H + C C K+ L RH +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHY---RKHT 61
Query: 276 GVR-FSCHLCGKSFHREQSLRKHLR 299
G R F C C ++F R L H++
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 30.2 bits (69), Expect = 0.30
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 410 VYQCYHCLKIFKRKKDLPRHIMSVHMRIK-YPCTI--CPREFQNKANLNHHLASHAG-KT 465
C K + + L H + H K Y C C +F L H H G +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 466 YECENCSKIFNSKRKLYSHKRKDHM 490
++C+ C + F+ L H ++ H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKR-HF 89
Score = 26.3 bits (59), Expect = 6.8
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 27/106 (25%)
Query: 141 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDK--CRYKTFLKSNLIAHVHGKRFCDIC 198
CGK++ + L+ HLR + HCD C G +F
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGC---------------GWKF---- 47
Query: 199 SQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
+ L H + H G + +C++C R F S L H M+ H
Sbjct: 48 ----ARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH-MKRH 88
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.3 bits (88), Expect = 0.007
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 23 PKQVEFPCVYCGKIFPRLGLLKEHTKTHHLK 53
+ C C + L H +H L
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 34.8 bits (79), Expect = 0.079
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 212 KQVHEGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHI 268
G ++C CS + S L H + SH ++ ++RHI
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAH-VASH--------GLHGNMTLTSSEIQRHI 220
Score = 33.7 bits (76), Expect = 0.20
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 75 KQVHEGKQHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHI 131
G ++C C + S L H + SH ++ ++RHI
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAH-VASH--------GLHGNMTLTSSEIQRHI 220
Score = 33.3 bits (75), Expect = 0.27
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 438 KYPCTICPREFQNKANLNHHLASH 461
Y C +C + +L+ H+ASH
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.28
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 46 HTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVH 78
T Y C +CS + L H H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.30
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 440 PCTICPREFQNKANLNHHLASHA-GKTYECENCSKIFNSKRKLYSHKRKDHMG 491
+ + G Y+C CS + S L +H +
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 31.4 bits (70), Expect = 0.96
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 104 RSHKTRELFKCHQCSRKYMSKPSLRRHIYATH 135
+ + ++CH CS S L H+ A+H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHV-ASH 203
Score = 31.4 bits (70), Expect = 1.0
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 138 KGVRFSCHLCGKSFHREQSLRKHLR 162
G + CH+C L H+
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVA 201
Score = 31.4 bits (70), Expect = 1.0
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 275 KGVRFSCHLCGKSFHREQSLRKHLR 299
G + CH+C L H+
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVA 201
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 33.9 bits (77), Expect = 0.009
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 30 CVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
C CG + +LK+H +TH Y C C+ + TK L H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 32.8 bits (74), Expect = 0.023
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 141 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHV 189
++ C CG + L+KH+R + HC C + K NL H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.8 bits (74), Expect = 0.023
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 278 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHV 326
++ C CG + L+KH+R + HC C + K NL H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.4 bits (73), Expect = 0.027
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 466 YECENCSKIFNSKRKLYSHKRKDHMGLTYSCFMCNKTITSKNSLRDHIHLFHGRKK 521
Y CE C L H R Y C CN + +K +L H+ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 31.2 bits (70), Expect = 0.081
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 438 KYPCTICPREFQNKANLNHHLASHAG-KTYECENCSKIFNSKRKLYSHKRK 487
KY C C + + L H+ +H + Y C C+ F +K L H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 31.2 bits (70), Expect = 0.082
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASHAG 463
Y C C K+ L +HI + Y CT C F+ K NL H+ S A
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 30.5 bits (68), Expect = 0.14
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 219 QHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHI 268
++ CEEC ML H +R+H + C C+ + +K +L +H+
Sbjct: 1 KYICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 28.9 bits (64), Expect = 0.57
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 55 RYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKCPRLFPSSKMLYDHTMRSH 106
+Y C+ C LK H + H + + C C F + L H M+S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSK 52
Score = 27.8 bits (61), Expect = 1.3
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVRFSCHLCGKSFHREQSLRKHLR 299
+ C +C + L++HI + + + C C SF + +L KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVR--PYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.4 bits (60), Expect = 1.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 82 QHECEKCPRLFPSSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHI 131
++ CE+C ML H +R+H + C C+ + +K +L +H+
Sbjct: 1 KYICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.0 bits (59), Expect = 2.3
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLR 162
+ C +C + L++HI + + C C SF + +L KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVR--PYHCTYCNFSFKTKGNLTKHMK 50
Score = 25.4 bits (55), Expect = 9.2
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
C+ C LK H + H + + C C+ F + L H M+S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSK 52
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 31.4 bits (72), Expect = 0.053
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMG-LTYSCFMCNKTITS 505
+S + K Y C++C K F+ L H ++ H + C + +S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 29.1 bits (66), Expect = 0.38
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 432 SVHMRIK-YPCTICPREFQNKANLNHHLAS-HAG-KTYECENCSKIFNS 477
S K Y C C + F +LN H+ H + ++C+ +S
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 28.7 bits (65), Expect = 0.59
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIK-YPCTICPREF 448
Y C C K F R L HI VH + + C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 27.5 bits (62), Expect = 1.2
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTHHLKVR-YTCDICSQDYST 67
+ C CGK F R L H K H R + C + S+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 56 YTCDICSQDYSTKYYLKLHKQ-VHEG-KQHECEKCPRLFPS 94
Y C C + +S +L H + VH + H+C+ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 211 HKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKCHQCSR 256
K + C+ C + F L H + H + KC
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 26.4 bits (59), Expect = 3.1
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 195 CDICSQDYSTKYYLKLHKQ-VHEG-KQHECEECSRLFPS 231
C C + +S +L H + VH + H+C+ S
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.0 bits (58), Expect = 5.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
+ C CGK F R L H++
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK 33
Score = 26.0 bits (58), Expect = 5.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
+ C CGK F R L H++
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK 33
Score = 25.2 bits (56), Expect = 8.0
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATHINKGVR-FSCHLCGKSF 151
+ C C + + L HI H R C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH--TSERPHKCQVWVSGP 51
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.1 bits (72), Expect = 0.11
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 238 HTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHIN--KGVRFSCHLCGKSFHREQSLR 295
H ++ K ++C C+ + H+ + H N + C C R +L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 296 KHLREEE 302
+H +
Sbjct: 68 EHNLKYH 74
Score = 31.7 bits (71), Expect = 0.14
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 101 HTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHIN--KGVRFSCHLCGKSFHREQSLR 158
H ++ K ++C C+ + H+ + H N + C C R +L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 159 KHLREEE 165
+H +
Sbjct: 68 EHNLKYH 74
Score = 31.7 bits (71), Expect = 0.15
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 156 SLRKHLREEENQDQLHCDKCRYKTFLKSNLIAHVHGKRFCDICSQDYSTKYYLKLHKQVH 215
+ + ++ + C C ++T + HV + H V
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSE------------------HPNVV 46
Query: 216 EGKQHECEECSRLFPSSKMLYDHTMRSHKTRVLFKC 251
+ C EC+ L L +H ++ H FK
Sbjct: 47 LNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKL 82
Score = 31.3 bits (70), Expect = 0.18
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 426 LPRHIMSVHMRIKYPCTICPREFQNKANLNHHLAS-----HAGKTYECENCSKIFNSKRK 480
+ + + Y C C + + H+ S +Y C C+ +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 481 LYSHKRKDHMG 491
L H K H G
Sbjct: 66 LSEHNLKYHPG 76
Score = 28.2 bits (62), Expect = 2.1
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 74 HKQVHEGKQHECEKCPRLFPSSKMLYDHTMRSH---KTRELFKCHQCSRKYMSKPSLRRH 130
+ +EC+ C P M H H + C +C+ +L H
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 131 IYATH 135
H
Sbjct: 70 NLKYH 74
Score = 28.2 bits (62), Expect = 2.5
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 211 HKQVHEGKQHECEECSRLFPSSKMLYDHTMRSH---KTRVLFKCHQCSRKYMSKPSLRRH 267
+ +EC+ C+ P M H H + C +C+ +L H
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 268 IYANH 272
H
Sbjct: 70 NLKYH 74
Score = 28.2 bits (62), Expect = 2.6
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 456 HHLASHAGKTYECENCSKIFNSKRKLYSHKRKDHMGL----TYSCFMCNKTITSKNSLRD 511
+ YEC+ C+ H +H + +Y C CN ++L +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 512 HIHLFH 517
H +H
Sbjct: 69 HNLKYH 74
Score = 27.4 bits (60), Expect = 4.6
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 46 HTKTHHLKVRYTCDICSQDYSTKYYLKLHKQ-----VHEGKQHECEKCPRLFPSSKMLYD 100
+ + ++ Y C C+ H V + C +C L L +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 101 HTMRSHKTRELFKC 114
H ++ H E FK
Sbjct: 69 HNLKYHPGEENFKL 82
Score = 26.7 bits (58), Expect = 7.4
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 18 QHYDKPKQVEFPCVYCGKIFPRLGLLKEHTKTHH 51
+H + + CV C + R L EH +H
Sbjct: 41 EHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 30.2 bits (69), Expect = 0.11
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMG 491
+S G K YEC C K F L H R H G
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 33.6 bits (76), Expect = 0.19
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 214 VHEGKQHECEECSRLFPSSKMLYDHTMRSHKT 245
+ + C C+ F + L +H H+
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 32.9 bits (74), Expect = 0.29
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 77 VHEGKQHECEKCPRLFPSSKMLYDHTMRSHKT 108
+ + C C F + L +H H+
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 30.9 bits (69), Expect = 1.4
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 112 FKCHQCSRKYMSKPSLRRHIYATH 135
+ C+ C+ ++ + +L H+ + H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.20
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+CE C K +NSK L H++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.0 bits (66), Expect = 0.30
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
S G K Y+CE C F L +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.32
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
F C CG +F SL KHLR
Sbjct: 13 FQCKECGMNFSWSCSLFKHLR 33
Score = 29.1 bits (66), Expect = 0.32
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
F C CG +F SL KHLR
Sbjct: 13 FQCKECGMNFSWSCSLFKHLR 33
Score = 28.7 bits (65), Expect = 0.40
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K ++C+ C F+ L+ H R
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 26.4 bits (59), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 211 HKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
G K +C+EC F S L+ H +RSH
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSH 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.32
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 32/114 (28%)
Query: 285 GKSFHREQSLRKHLREEENQDQLHCDKCRYKTF-------LKSN---LIAHVHGYHRLAI 334
G ++ + + D T+ + +N L H G I
Sbjct: 1632 GMDLYKTSKAAQDVWNR-------ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 335 TLTDITMNHSGIKLECSPD----LKYVKNEIREDLQTII------KIDETKFHQ 378
N+S + E D + + EI E + + T+F Q
Sbjct: 1685 R-----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 29.0 bits (66), Expect = 0.32
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
S G K Y CE C F + L SH R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
Score = 28.6 bits (65), Expect = 0.40
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTH 50
+PC CG F L LK H + H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 28.2 bits (64), Expect = 0.63
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
+ C +CG F Q+L+ HLR
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
Score = 28.2 bits (64), Expect = 0.63
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
+ C +CG F Q+L+ HLR
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
Score = 26.3 bits (59), Expect = 2.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 46 HTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG 80
+ + + Y C+IC + LK H ++H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.0 bits (66), Expect = 0.34
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G YEC C K+F+ K +L SH++
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.1 bits (66), Expect = 0.34
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKRKDHMG 491
+S +G K++ C+ C K F L H+R HMG
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMG 37
Score = 25.6 bits (57), Expect = 4.8
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 211 HKQVHEG-KQHECEECSRLFPSSKMLYDHTMRSH 243
G K H C+EC + F L H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.0 bits (66), Expect = 0.34
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC C K FN+K L H+R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 25.1 bits (56), Expect = 7.1
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 433 VHMRIK-----YPCTICPREFQNKANLNHHLASHAG-KTYEC 468
Y C C + F K+NL H +H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 29.8 bits (66), Expect = 0.34
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTH 50
PC CGK+F L++H H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.35
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K F+ +L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.40
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S AG Y+C C K F+ K +L H+R
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 24.8 bits (55), Expect = 9.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 46 HTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEK 87
+ Y C C + +S K L +H+++H K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.42
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G KT++C C F+ L H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.42
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 153 REQSLRKHLREEENQD-QLHCDKCRYKTFLKSNLIA-HVHGKRFCDIC 198
RE ++ R N + L C +C+ ++ G C +C
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYP---PKIVERFSEGDVVCALC 48
Score = 31.2 bits (70), Expect = 0.60
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 122 MSKPSLRRHIYATHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKC 175
M++ S+ + N + +C C + E ++ + C C
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECK-------VYPPKIVERFSEGDVVCALC 48
Score = 30.8 bits (69), Expect = 0.76
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 259 MSKPSLRRHIYANHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKC 312
M++ S+ + N + +C C + E ++ + C C
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECK-------VYPPKIVERFSEGDVVCALC 48
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.44
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC+ C K F+ L H+R
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.46
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S + K Y+CE+C K +N + L H+R
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.48
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S AG K Y C C K F+SK L H R
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.51
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K Y C C K F+ K L +H+R
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.54
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+CE C K F +R LY+H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.57
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F+ L +H+
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.58
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K F+ KL H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.60
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + YEC C K F K L H+R
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.60
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K F+ KL H+R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 28.0 bits (63), Expect = 0.66
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
S G Y C C K F + L H+R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 25.3 bits (56), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
+ C CGKSF + SL H R
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQR 32
Score = 25.3 bits (56), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
+ C CGKSF + SL H R
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQR 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.67
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K Y+C C K+F L +H R
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.68
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + YEC C K F +K L H+R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.68
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C+ C K F+ L H+R
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 25.2 bits (56), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
++C CGKSF R L KH R
Sbjct: 13 YNCKECGKSFSRAPCLLKHER 33
Score = 25.2 bits (56), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
++C CGKSF R L KH R
Sbjct: 13 YNCKECGKSFSRAPCLLKHER 33
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.70
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S + K+++C C + F K L H+R
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.74
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K ++C +C K F+ L H+R
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 28.4 bits (63), Expect = 0.75
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 438 KYPCTICPREFQNKANLNHHLASHAG-KTYECENCS 472
+ C IC + F++ +LN H SH+G K Y S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 1.00
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 22 KPKQVEFPCVYCGKIFPRLGLLKEHTKTHHLKVRYTCDICS 62
+ + C CGKIF + L H +H + Y+ S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 1.0
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 47 TKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEG-KQHECEKC 88
+ + + C+IC + + Y+L HK H G K +
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 CDICSQDYSTKYYLKLHKQVHEG-KQHECEECS 226
C+IC + + Y+L HK H G K + S
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 27.9 bits (63), Expect = 0.75
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
S G K Y C+ C K F+ K L H R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.78
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y CE C K F +L H+R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.79
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.81
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.81
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K +C C K F K +L H+R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.84
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K F + L +H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.86
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C +C K F K L+ H++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.87
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K ++C+ C K F + +L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.91
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C+ C K F+ L +H+R
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 27.9 bits (63), Expect = 0.91
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K YEC C K F K L H+R
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 27.5 bits (62), Expect = 0.93
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 464 KTYECENCSKIFNSKRKLYSHKR 486
+ YEC+ C K F K L H+R
Sbjct: 9 RVYECQECGKSFRQKGSLTLHER 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.94
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K YEC+ C K F L HKR
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.95
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C+ C K F L H+R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.97
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K ++CE C K F + + YSH+R
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 27.5 bits (62), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K +EC +C K F +K L +H+R
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.4 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F SK L H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.5 bits (62), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 460 SHAG-KTYECENCSKIFNSKRKLYSHKR 486
+G YEC C K FN K +L SH+R
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQR 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K F H+R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC +C K F K +L+ H+R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.5 bits (61), Expect = 1.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S AG ++C C ++F + L H+R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 26.4 bits (58), Expect = 2.7
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 46 HTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQ 82
+ + + C C + ++ + YL H++ H K
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K Y+C C K F+ L H+R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.4 bits (62), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K +EC C K FN+K L H+R
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 459 ASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+ +G K + C C K F+SK L H++
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECEN 470
+ C+ C + F +K+ L H +HA K +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 25.6 bits (57), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 56 YTCDICSQDYSTKYYLKLHKQVHEG-KQHEC 85
+ C C + +S+K YL +H+Q H K
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F+ +L H++
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G + ++C C K F + L H R
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 25.2 bits (56), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
F C+ CGK F R L HLR
Sbjct: 13 FKCNECGKGFGRRSHLAGHLR 33
Score = 25.2 bits (56), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
F C+ CGK F R L HLR
Sbjct: 13 FKCNECGKGFGRRSHLAGHLR 33
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C +C K F K +L H++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F + L++H++
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC C K F+ ++ L H+R
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + YEC C K F K L H+R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR 33
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K +EC C K F K L H++
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F K L H+R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K ++CE C K F +L+SH+R
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K +EC C K F+ +L +H+R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR 33
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + C C K+F K L H++
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 1.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + + C +C K F H+R
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.1 bits (61), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C+K F+ K +L H+R
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S AG K ++C C K F L H+R
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Length = 135
Score = 29.3 bits (65), Expect = 1.5
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 2/96 (2%)
Query: 259 MSKPSLRRH--IYANHINKGVRFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKCRYKT 316
M P+ H I A +++ F G R R L +Q H +
Sbjct: 4 MRNPNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYPDRITLDFFGDQLVCHLSDRWDRE 63
Query: 317 FLKSNLIAHVHGYHRLAITLTDITMNHSGIKLECSP 352
+ + GI
Sbjct: 64 VSMYPRHFGITFRDKKHFDNLYKLAKQRGIPFYHDL 99
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.1 bits (60), Expect = 1.5
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 14 REPEQHYDKPKQ-VEFPCVY--CGKIFPRLGLLKEHTKTH 50
R Y K F C++ C K F R ++ H +TH
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC C K F K +L+ H++
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F K L H+R
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC C K F+ + L +H+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.7
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K F ++ L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K Y C+ C K F +L H+R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K ++CE C K F L+SH+R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L +H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 2.0
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 468 CENCSKIFNSKRKLYSHKRKDHMGLTYSCFMCNKTITSKNSLRDHIHLFHGRK 520
E+ K +S + H+ + + + LR IHL R+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 28.6 bits (63), Expect = 3.9
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 27 EFPCVYCGKIFPRLGLLKE---HTKTHHLKVRYTCDICSQDYSTKYYLKLHKQVHEGKQ 82
Y RL + + H + R + Q L+ + +Q
Sbjct: 177 WLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.9 bits (61), Expect = 7.2
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 9/48 (18%)
Query: 102 TMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGK 149
+ + + + + + LR I S GK
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPI---------HLSVLRQGK 237
Score = 27.9 bits (61), Expect = 8.1
Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 20/158 (12%)
Query: 136 INKGVRFSCHLCGKSFHREQSLRKHLREEENQDQL-HCDKCRYKTFLKSNLIAHVHGKRF 194
I KG F G+ +++S +++ +T K+N + +V R
Sbjct: 93 IPKGHIF-GPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDET--KANWMRYVVISRE 149
Query: 195 CD---ICSQDYSTKYYLKLHKQVHEGKQ---HECEECSRLFPSSKMLYDHTMRSHKTRVL 248
+ + +S + Y + + + G+ E+ + S H +
Sbjct: 150 EREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIH-RNLARGEKR 208
Query: 249 FKCHQCSRKYMSKPSLRRHIYANHINKGVRFSCHLCGK 286
+ + + + LR I S GK
Sbjct: 209 LQREKSEQVLDNPEDLRGPI---------HLSVLRQGK 237
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 27.7 bits (61), Expect = 2.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 439 YPCTICPREFQNKANLNHHLASHAGKTYECENCSKIFNSKRKLYSHKR 486
C+ C F ++ L+ KT CE C K + L +
Sbjct: 19 QKCSKCGIIFIRRSTLSRR------KTPMCEKCRKDSCQEAALNKDEG 60
Score = 27.3 bits (60), Expect = 2.9
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 94 SSKMLYDHTMRSHKTRELFKCHQCSRKYMSKPSLRRHIYATHINKGVRFSCHLCGKSFHR 153
SS + H KC +C ++ + +L R C C K +
Sbjct: 2 SSGSSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSRR---------KTPMCEKCRKDSCQ 51
Query: 154 EQSLRKHLREE 164
E +L K E
Sbjct: 52 EAALNKDEGNE 62
Score = 26.2 bits (57), Expect = 6.2
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 231 SSKMLYDHTMRSHKTRVLFKCHQCSRKYMSKPSLRRHIYANHINKGVRFSCHLCGKSFHR 290
SS + H KC +C ++ + +L R C C K +
Sbjct: 2 SSGSSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSRR---------KTPMCEKCRKDSCQ 51
Query: 291 EQSLRKHLREE 301
E +L K E
Sbjct: 52 EAALNKDEGNE 62
Score = 26.2 bits (57), Expect = 6.9
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 411 YQCYHCLKIFKRKKDLPRHIMSVHMRIKYPCTICPREFQNKANLNHHLASHAGKT 465
+C C IF R+ L R C C ++ +A LN + +GK
Sbjct: 19 QKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEGNESGKK 66
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K Y+C C K + + L H+R
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 86 EKCPRLFPSSKMLYDHTMRSHKTREL------FKCH--QCSRKYMSKPSLRRHIYATH 135
++CP S L H ++ H +++ C+ C S+ HI A H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 26.2 bits (57), Expect = 5.5
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 469 ENCSKIFNSKRKLYSHKRKDHMGLTYSCFM---------CNKTITSKNSLRDHIHLFH 517
+ C + +S L H KDH+ + M C+ S+ +HI+ H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 25.8 bits (56), Expect = 8.6
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 223 EECSRLFPSSKMLYDHTMRSHKTRVL------FKCH--QCSRKYMSKPSLRRHIYANH 272
+EC S L H ++ H ++ C+ C S+ HI A H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC+ CSK F K L H++
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.8 bits (58), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 462 AGKTYECENCSKIFNSKRKLYSHKRKDH 489
+G++Y C C K F+ R + SH + +H
Sbjct: 6 SGRSYSCPVCEKSFSEDRLIKSHIKTNH 33
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 456 HHLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G YEC C K F+ K +L SH+R
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR 33
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 26.5 bits (59), Expect = 2.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 141 RFSCHLCGKSFHREQSLRKHLR 162
F C C +SF R L H +
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRK 32
Score = 26.5 bits (59), Expect = 2.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 278 RFSCHLCGKSFHREQSLRKHLR 299
F C C +SF R L H +
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRK 32
Score = 25.0 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 28 FPCVYCGKIFPRLGLLKEHTKTH 50
F C C + F R L H K H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 26.7 bits (60), Expect = 2.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K ++C C K F+ + L H +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 26.8 bits (60), Expect = 2.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C+ C K F L H+R
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C C K+F L H+
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G + Y C C K F L H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 25.2 bits (56), Expect = 6.9
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 439 YPCTICPREFQNKANLNHHLASHAG-KTYECEN 470
Y C C + F ++L HL H K+ +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 25.2 bits (56), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
+ C+ CGK+F R L +HL+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLK 33
Score = 25.2 bits (56), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
+ C+ CGK+F R L +HL+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLK 33
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K +EC C K F+ +L H+R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 29.6 bits (66), Expect = 3.1
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 154 EQSLRKHLREE--ENQDQLHCDKCRYKTFLKSNLIA------HVHGKRFCDICSQDYSTK 205
+S ++ E + ++ + + K H+ RF D T
Sbjct: 323 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRF----MYDPQTD 378
Query: 206 YYLKLHKQVH 215
+K++ +
Sbjct: 379 QNIKINDRFE 388
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S +G K ++C+ C K F L SH R
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K ++C C K +N + L H+R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.3
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + Y C C K F + L H++
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F + L H++
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.3
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y C C K F L H R
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K Y+C+ C K F L H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 26.3 bits (59), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G K YEC+ C K F+ L H+R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 4.5
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 457 HLASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+S G + ++C C K F L H+R
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.4 bits (56), Expect = 4.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 142 FSCHLCGKSFHREQSLRKHLR 162
F C +C ++F R++ L++H R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
Score = 25.4 bits (56), Expect = 4.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 279 FSCHLCGKSFHREQSLRKHLR 299
F C +C ++F R++ L++H R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 29.0 bits (65), Expect = 4.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 85 CEKC-PRLFPSSKMLYDHTMRSHKTRELFK-CHQCSRKYMSKPSLRRHIYATHINKGVRF 142
C C PR + YD R+ + ++F C +CSR+Y P RR +A +
Sbjct: 136 CTNCGPRFSIIEDIPYD---RAKTSMKVFPMCEKCSREYHD-PHDRRF-HAQPV------ 184
Query: 143 SCHLCG 148
+C CG
Sbjct: 185 ACFDCG 190
Score = 28.6 bits (64), Expect = 7.3
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 222 CEECSRLFPSSKML-YDHTMRSHKTRVLFK-CHQCSRKYMSKPSLRRHIYANHINKGVRF 279
C C F + + YD R+ + +F C +CSR+Y R H
Sbjct: 136 CTNCGPRFSIIEDIPYD---RAKTSMKVFPMCEKCSREYHDPHDRRFHAQPV-------- 184
Query: 280 SCHLCG 285
+C CG
Sbjct: 185 ACFDCG 190
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.7 bits (57), Expect = 4.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 459 ASHAG-KTYECENCSKIFNSKRKLYSHKR 486
+ +G K Y C C + F+ +L H++
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK 31
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 28.7 bits (64), Expect = 5.3
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 154 EQSLRKHLREE--ENQDQLHCDKCRYKTFLKSNLIA------HVHGKRFCDICSQDYSTK 205
+S ++ E + ++ + + K H+ RF D T
Sbjct: 154 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRF----MYDPQTD 209
Query: 206 YYLKLHKQVH 215
+K++ +
Sbjct: 210 QNIKINDRFE 219
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 27.2 bits (60), Expect = 5.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 25 QVEFPCVYCGKIFPRLGLLKEHTKTHH 51
+ PC++C ++F H K H
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEH 39
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.2 bits (59), Expect = 6.1
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 2/80 (2%)
Query: 222 CEECSRLFPSSKMLYDHTM-RSHKTRV-LFKCHQCSRKYMSKPSLRRHIYANHINKGVRF 279
C+ CS + S H R H +V + + + +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 280 SCHLCGKSFHREQSLRKHLR 299
C +C +F H
Sbjct: 95 CCPVCNMTFSSPVVAESHYI 114
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 28.6 bits (64), Expect = 7.0
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 13/66 (19%)
Query: 85 CEKC-PRLFPSSKMLYDHTMRSHKTRELFK-CHQCSRKYMSKPSLRRHIYATHINKGVRF 142
C C PR M YD R F C C ++Y P RR
Sbjct: 42 CTHCGPRFTIIRAMPYD---RPFTVMAAFPLCPACDKEYRD-PLDRRFHAQP-------V 90
Query: 143 SCHLCG 148
+C CG
Sbjct: 91 ACPECG 96
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 25.3 bits (54), Expect = 7.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 439 YPCTICPREFQNKANLNHHLASHAGKTYE 467
Y C +C F+ K +++H+ SH G +
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone,
chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB:
1xjh_A
Length = 292
Score = 28.0 bits (63), Expect = 7.6
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 90 RLFPSSKMLYDHTMRSHKTREL-FKCHQCSRKYMSK--PSL----RRHIYATHINKGVRF 142
RL+ + + + +++ FKC CSR+ + +L I A + +
Sbjct: 211 RLYH------EEEVTVYDPQDVEFKCT-CSRERSADALKTLPDEEVDSILAE--DGEIDM 261
Query: 143 SCHLCGKSFH-REQSLRKHLRE-EENQDQLH 171
C CG + + + Q+H
Sbjct: 262 HCDYCGNHYLFNAMDIAEIRNNASPADPQVH 292
Score = 27.6 bits (62), Expect = 8.8
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 247 VLFKCHQCSRKYMSK--PSL----RRHIYANHINKGVRFSCHLCGKSFH-REQSLRKHLR 299
V FKC CSR+ + +L I A + + C CG + + +
Sbjct: 226 VEFKCT-CSRERSADALKTLPDEEVDSILAE--DGEIDMHCDYCGNHYLFNAMDIAEIRN 282
Query: 300 E-EENQDQLH 308
Q+H
Sbjct: 283 NASPADPQVH 292
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 28.0 bits (62), Expect = 7.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 141 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKC 175
C CGK + + + L E +D + CD C
Sbjct: 144 HCHCIGCGKVYPPQV-FKSKLAEHPIKDFVKCDVC 177
Score = 28.0 bits (62), Expect = 7.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 278 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKC 312
C CGK + + + L E +D + CD C
Sbjct: 144 HCHCIGCGKVYPPQV-FKSKLAEHPIKDFVKCDVC 177
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.9 bits (54), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 141 RFSCHLCGKSFHREQSLRKHLREEENQ 167
+F+C C K F R L H+ EN+
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
Score = 24.9 bits (54), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 278 RFSCHLCGKSFHREQSLRKHLREEENQ 304
+F+C C K F R L H+ EN+
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 141 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKC 175
C CGK + + + L E +D + CD C
Sbjct: 136 HCHCIGCGKVYPPQV-FKSKLAEHPIKDFVKCDVC 169
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 278 RFSCHLCGKSFHREQSLRKHLREEENQDQLHCDKC 312
C CGK + + + L E +D + CD C
Sbjct: 136 HCHCIGCGKVYPPQV-FKSKLAEHPIKDFVKCDVC 169
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 25.8 bits (57), Expect = 9.6
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 21 DKPKQVEFPCVY--CGKIFPRLGLLKEHTKTHHLKVRYTCDI--CSQDYSTKYYLKLHKQ 76
D + C + CGK + + LK HT+TH + ++C C + ++ L H++
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 77 VH 78
H
Sbjct: 71 TH 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.433
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,826,397
Number of extensions: 455911
Number of successful extensions: 4319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3537
Number of HSP's successfully gapped: 1166
Length of query: 526
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 428
Effective length of database: 3,965,535
Effective search space: 1697248980
Effective search space used: 1697248980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.6 bits)