Query psy13516
Match_columns 284
No_of_seqs 144 out of 384
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:21:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_A 40S ribosomal protein S 19.0 62 0.0021 28.8 2.7 83 133-224 116-208 (252)
2 2nvm_A FDXN element excision c 18.5 1.2E+02 0.004 24.2 3.9 38 99-142 74-111 (126)
3 1x3x_A Cytochrome B5; hemoprot 17.8 80 0.0027 22.6 2.7 27 86-112 6-32 (82)
4 1cxy_A Cytochrome B5; helix, b 16.6 99 0.0034 22.6 3.0 28 85-112 9-36 (90)
5 2ibj_A Cytochrome B5, CYTB5; F 15.3 1E+02 0.0034 22.3 2.7 27 86-112 9-35 (88)
6 3bch_A 40S ribosomal protein S 15.2 55 0.0019 29.2 1.4 81 133-221 150-238 (253)
7 2nwv_A XISI protein-like; YP_3 15.2 1E+02 0.0034 24.1 2.8 16 99-114 62-77 (114)
8 1cyo_A Cytochrome B5; electron 14.8 94 0.0032 22.9 2.5 28 86-113 7-34 (93)
9 2nlv_A XISI protein-like; XISI 14.8 1E+02 0.0036 24.0 2.8 16 99-114 60-75 (112)
10 3d7q_A XISI protein-like; stru 14.8 1E+02 0.0036 24.0 2.8 16 99-114 60-75 (112)
No 1
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=19.05 E-value=62 Score=28.78 Aligned_cols=83 Identities=19% Similarity=0.377 Sum_probs=51.2
Q ss_pred CCCCeEEEeecCCccc-ccCCCCCCCCeEEeccCC---CcCceeecCccccCCCCCccccCCCCCc-hHHHHHHHHhh--
Q psy13516 133 DVTDLEFVINTRDYPQ-VHRHQSKPLPMFSFSKTG---DYSDIMYPAWAFWEGGPAIKLYPTGIGR-WDKHRKALSQE-- 205 (284)
Q Consensus 133 ~LPDmEfv~N~~D~P~-~~~~~~~~~Pvfs~cks~---~~~DIl~Pd~~fw~~wpe~~~~p~~ig~-wd~~~~~i~~~-- 205 (284)
.+||+-|+++..-.-. +.....-..|+++.|-++ +..|+.+|...- |- ..++= |..+...+.+.
T Consensus 116 ~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Ndd--s~-------~SI~Li~~~La~aVl~~rg 186 (252)
T 3u5c_A 116 KEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNR--GK-------HSIGLIWYLLAREVLRLRG 186 (252)
T ss_dssp CCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECCTT--ST-------THHHHHHHHHHHHHHSSSS
T ss_pred cCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCCC--Cc-------chHHHHHHHHHHHHHHhcC
Confidence 6999999998753222 111112468999999875 578999998543 11 12221 34444444332
Q ss_pred ---hcCCCCCCcccceeeecCC
Q psy13516 206 ---AAKYPWSKKLNKGFFRGSR 224 (284)
Q Consensus 206 ---~~~~pW~~K~~kafWRG~~ 224 (284)
+.+.||+-....-|.|--.
T Consensus 187 ~i~s~~~~w~v~~dl~fyrdpe 208 (252)
T 3u5c_A 187 ALVDRTQPWSIMPDLYFYRDPE 208 (252)
T ss_dssp SCCSSSCCCSSCGGGSSCCCC-
T ss_pred CcCcCCCCCccCceeeeecCHH
Confidence 2567999888888888553
No 2
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=18.50 E-value=1.2e+02 Score=24.24 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=23.7
Q ss_pred cEEEEECCEEEEEecCCchhHHHHHHHHHHHhhcCCCCeEEEee
Q psy13516 99 TLYQIIDHTVHKIGSCMFPARCAGIEHFLHKVKNDVTDLEFVIN 142 (284)
Q Consensus 99 ~rv~I~nGkly~~~~~~~~~R~~gi~~~L~~~~~~LPDmEfv~N 142 (284)
+|+.|+|||++++.++. -.|+..-|.+. .+|--++|+-
T Consensus 74 iHldIkdgKIWIq~D~T----E~gIa~eLv~~--GIPk~DIVLg 111 (126)
T 2nvm_A 74 LYLQIQNGKIWIEEDST----NLAIVDEMLVA--GIPQTDIILG 111 (126)
T ss_dssp EEEEEETTEEEEEECSS----TTHHHHHHHHT--TCCGGGEEET
T ss_pred EEEEEeCCeEEEEeCCc----hhhHHHHHHHc--CCCHHHEEEc
Confidence 58999999999998751 23443333333 5665555543
No 3
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=17.81 E-value=80 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=19.3
Q ss_pred CCHHHHHhhhccccEEEEECCEEEEEe
Q psy13516 86 IYEKEMSLLKDKGTLYQIIDHTVHKIG 112 (284)
Q Consensus 86 It~~~l~~a~~~g~rv~I~nGkly~~~ 112 (284)
+|.+++.+-...+-.++|++|+||=..
T Consensus 6 ~t~~ev~~h~~~~~~wv~i~g~VYDvT 32 (82)
T 1x3x_A 6 YTKEEVAKHNTQNDLWIIYDGEVHDMT 32 (82)
T ss_dssp ECHHHHHTCEETTEEEEEETTEEEECG
T ss_pred cCHHHHHhhCCCCCEEEEECCEEEECC
Confidence 677888655444445888999999754
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=16.56 E-value=99 Score=22.55 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=19.7
Q ss_pred CCCHHHHHhhhccccEEEEECCEEEEEe
Q psy13516 85 GIYEKEMSLLKDKGTLYQIIDHTVHKIG 112 (284)
Q Consensus 85 gIt~~~l~~a~~~g~rv~I~nGkly~~~ 112 (284)
.+|.+++.+-...+--++|++|+||=..
T Consensus 9 ~~t~~Ev~~h~~~~~~wv~i~g~VYDvT 36 (90)
T 1cxy_A 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLT 36 (90)
T ss_dssp BCCHHHHTTCEETTEEEEEETTEEEECT
T ss_pred CcCHHHHHHhcCCCCEEEEECCEEEECc
Confidence 3778888655444546788899999654
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=15.32 E-value=1e+02 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=19.3
Q ss_pred CCHHHHHhhhccccEEEEECCEEEEEe
Q psy13516 86 IYEKEMSLLKDKGTLYQIIDHTVHKIG 112 (284)
Q Consensus 86 It~~~l~~a~~~g~rv~I~nGkly~~~ 112 (284)
+|.+++.+-...+--++|++|+||=..
T Consensus 9 ~t~~ev~~h~~~~~~wv~i~g~VYDvT 35 (88)
T 2ibj_A 9 FTRAEVAKNNTKDKNWFIIHNNVYDVT 35 (88)
T ss_dssp ECHHHHHTSEETTEEEEEETTEEEECG
T ss_pred cCHHHHHHhCCCCCEEEEECCEEEECC
Confidence 677888655444445788899999764
No 6
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=15.16 E-value=55 Score=29.16 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=47.0
Q ss_pred CCCCeEEEeecCCccc-ccCCCCCCCCeEEeccCC---CcCceeecCccccCCCCCccccCCCCCchHHHHHHHHhh---
Q psy13516 133 DVTDLEFVINTRDYPQ-VHRHQSKPLPMFSFSKTG---DYSDIMYPAWAFWEGGPAIKLYPTGIGRWDKHRKALSQE--- 205 (284)
Q Consensus 133 ~LPDmEfv~N~~D~P~-~~~~~~~~~Pvfs~cks~---~~~DIl~Pd~~fw~~wpe~~~~p~~ig~wd~~~~~i~~~--- 205 (284)
.+||+-|+++..-.-. +.....-..|+++.|-++ +..|+.+|..+-- -..+.+. |..+.+.+.++
T Consensus 150 ~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds--~~SI~Li------~~lla~aIl~grg~ 221 (253)
T 3bch_A 150 REPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKG--AHSVGLM------WWMLAREVLRMRGT 221 (253)
T ss_dssp CSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSS--HHHHHHH------HHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCcccCceEeecCCcc--hhhHHHH------HHHHHHHHHHhcCc
Confidence 5899999998744321 111111378999999875 5788999986431 1111111 34444444333
Q ss_pred -hcCCCCCCcccceeee
Q psy13516 206 -AAKYPWSKKLNKGFFR 221 (284)
Q Consensus 206 -~~~~pW~~K~~kafWR 221 (284)
..+.||+-..+.-|+|
T Consensus 222 i~~~~~w~v~~dlf~yr 238 (253)
T 3bch_A 222 ISREHPWEVMPDLYFYR 238 (253)
T ss_dssp SCSSSCCSSCGGGGCCC
T ss_pred cCCCCCCccCceeeeec
Confidence 2467887666655565
No 7
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=15.16 E-value=1e+02 Score=24.15 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=14.4
Q ss_pred cEEEEECCEEEEEecC
Q psy13516 99 TLYQIIDHTVHKIGSC 114 (284)
Q Consensus 99 ~rv~I~nGkly~~~~~ 114 (284)
+|+-|+|||++++.++
T Consensus 62 iHidIkd~KIWIq~d~ 77 (114)
T 2nwv_A 62 VHIRIKNEKIYIEEDY 77 (114)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCeEEEEeCC
Confidence 5899999999999875
No 8
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=14.84 E-value=94 Score=22.90 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=19.9
Q ss_pred CCHHHHHhhhccccEEEEECCEEEEEec
Q psy13516 86 IYEKEMSLLKDKGTLYQIIDHTVHKIGS 113 (284)
Q Consensus 86 It~~~l~~a~~~g~rv~I~nGkly~~~~ 113 (284)
+|.+++.+-...+-.++|++|+||=...
T Consensus 7 ~t~~Ev~~h~~~~~~wv~i~g~VYDvT~ 34 (93)
T 1cyo_A 7 YTLEEIQKHNNSKSTWLILHYKVYDLTK 34 (93)
T ss_dssp ECHHHHTTCEETTEEEEEETTEEEECTT
T ss_pred cCHHHHHhhCCCCCEEEEECCEEEECCC
Confidence 6778876554445568888999997653
No 9
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=14.82 E-value=1e+02 Score=23.97 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=14.4
Q ss_pred cEEEEECCEEEEEecC
Q psy13516 99 TLYQIIDHTVHKIGSC 114 (284)
Q Consensus 99 ~rv~I~nGkly~~~~~ 114 (284)
+|+-|+|||++++.++
T Consensus 60 iHidIkd~KIWIq~d~ 75 (112)
T 2nlv_A 60 IHFDIKDGKIWLQQNL 75 (112)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCeEEEEeCC
Confidence 5899999999999875
No 10
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=14.81 E-value=1e+02 Score=23.97 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=14.3
Q ss_pred cEEEEECCEEEEEecC
Q psy13516 99 TLYQIIDHTVHKIGSC 114 (284)
Q Consensus 99 ~rv~I~nGkly~~~~~ 114 (284)
+|+-|+|||++++.++
T Consensus 60 iHidIkd~KIWIq~d~ 75 (112)
T 3d7q_A 60 MHLDIKNNKIWIQQNT 75 (112)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCeEEEEeCC
Confidence 5899999999999875
Done!