Query psy13516
Match_columns 284
No_of_seqs 144 out of 384
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 21:21:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13516.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13516hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tf5a1 a.162.1.1 (A:227-348) 26.1 17 0.0012 26.8 2.4 33 97-129 76-113 (122)
2 d1nkta1 a.162.1.1 (A:226-349) 25.5 13 0.00093 27.6 1.6 33 97-129 78-115 (124)
3 d1kbia2 d.120.1.1 (A:1-97) Fla 14.1 38 0.0028 23.5 1.9 28 85-112 10-37 (97)
4 d1syra_ c.47.1.1 (A:) Thioredo 14.1 41 0.003 22.7 2.1 33 118-150 31-64 (103)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 13.6 38 0.0027 18.5 1.3 18 8-25 6-23 (30)
6 d2nlva1 d.326.1.1 (A:1-111) Hy 13.2 58 0.0042 23.5 2.8 16 99-114 59-74 (111)
7 d2nwva1 d.326.1.1 (A:2-113) Hy 12.3 64 0.0047 23.3 2.8 16 99-114 60-75 (112)
8 d1mxsa_ c.1.10.1 (A:) KDPG ald 12.1 1.3E+02 0.0092 23.8 4.9 45 85-141 117-162 (216)
9 d1cxya_ d.120.1.1 (A:) Cytochr 11.7 79 0.0058 20.8 3.0 27 86-112 5-31 (81)
10 d1soxa2 d.120.1.1 (A:3-93) Sul 11.6 66 0.0048 21.7 2.6 27 86-112 5-32 (91)
No 1
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=26.14 E-value=17 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=24.0
Q ss_pred cccEEEEECCEEEEEec---CCchhH--HHHHHHHHHH
Q psy13516 97 KGTLYQIIDHTVHKIGS---CMFPAR--CAGIEHFLHK 129 (284)
Q Consensus 97 ~g~rv~I~nGkly~~~~---~~~~~R--~~gi~~~L~~ 129 (284)
++.+|+|+||+|.+.+. +..++| -.|+.++|.+
T Consensus 76 ~d~~YiV~~~~v~ivDe~TGR~~~gr~~~~GlhQaiEa 113 (122)
T d1tf5a1 76 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEA 113 (122)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHH
T ss_pred cCcceeecCCeEEEEeccCCCCccCcccCcHHHHHHHH
Confidence 36889999999999874 244555 3577777754
No 2
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.52 E-value=13 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.2
Q ss_pred cccEEEEECCEEEEEec---CCchhH--HHHHHHHHHH
Q psy13516 97 KGTLYQIIDHTVHKIGS---CMFPAR--CAGIEHFLHK 129 (284)
Q Consensus 97 ~g~rv~I~nGkly~~~~---~~~~~R--~~gi~~~L~~ 129 (284)
++.+|+|+||+|-+.+. +..++| -.|+.++|.+
T Consensus 78 ~d~dYiV~d~~v~ivDe~TGR~~~grr~s~GLHQaiEa 115 (124)
T d1nkta1 78 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEA 115 (124)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHH
T ss_pred cCceEEEecCeEEEEeccCCCcccCCCcChHHHHHHHH
Confidence 36899999999999874 244555 3577777764
No 3
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.13 E-value=38 Score=23.53 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=20.5
Q ss_pred CCCHHHHHhhhccccEEEEECCEEEEEe
Q psy13516 85 GIYEKEMSLLKDKGTLYQIIDHTVHKIG 112 (284)
Q Consensus 85 gIt~~~l~~a~~~g~rv~I~nGkly~~~ 112 (284)
.||.+++.+-...+--.+|++|+||=..
T Consensus 10 ~it~~EV~~H~~~~d~Wvvi~g~VYDvT 37 (97)
T d1kbia2 10 KISPAEVAKHNKPDDCWVVINGYVYDLT 37 (97)
T ss_dssp CBCTTHHHHCEETTEEEEEETTEEEECT
T ss_pred ccCHHHHHHhCCCCCEEEEECCEEEecc
Confidence 4788888665444545889999999764
No 4
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=14.08 E-value=41 Score=22.66 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEE-eecCCccccc
Q psy13516 118 ARCAGIEHFLHKVKNDVTDLEFV-INTRDYPQVH 150 (284)
Q Consensus 118 ~R~~gi~~~L~~~~~~LPDmEfv-~N~~D~P~~~ 150 (284)
..|..+...+.++.+..|+..|+ +|+++.|.+.
T Consensus 31 ~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~ 64 (103)
T d1syra_ 31 GPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVT 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHH
T ss_pred cCcccccccchhhhhcccceEEEeeccccCccee
Confidence 56777778888888888998888 8888877543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.63 E-value=38 Score=18.47 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=12.8
Q ss_pred eehhHHHHHHhhhhhhcc
Q psy13516 8 FDFDIAIIIVLIYTVRIG 25 (284)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (284)
|-|-.+|+|-|+|.+-.+
T Consensus 6 yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 456778999888766444
No 6
>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825 {Anabaena variabilis [TaxId: 1172]}
Probab=13.23 E-value=58 Score=23.54 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=14.4
Q ss_pred cEEEEECCEEEEEecC
Q psy13516 99 TLYQIIDHTVHKIGSC 114 (284)
Q Consensus 99 ~rv~I~nGkly~~~~~ 114 (284)
+|+-|+|||++++.++
T Consensus 59 iHldI~d~KIWIq~D~ 74 (111)
T d2nlva1 59 IHFDIKDGKIWLQQNL 74 (111)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEeCCeEEEEeCC
Confidence 5899999999999875
No 7
>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320 {Anabaena variabilis [TaxId: 1172]}
Probab=12.32 E-value=64 Score=23.32 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=14.4
Q ss_pred cEEEEECCEEEEEecC
Q psy13516 99 TLYQIIDHTVHKIGSC 114 (284)
Q Consensus 99 ~rv~I~nGkly~~~~~ 114 (284)
+|+-|+|||++++.++
T Consensus 60 iHldI~d~KIWIq~D~ 75 (112)
T d2nwva1 60 VHIRIKNEKIYIEEDY 75 (112)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEeCCeEEEEeCC
Confidence 5899999999999875
No 8
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=12.05 E-value=1.3e+02 Score=23.85 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCCHHHHHhhhccccE-EEEECCEEEEEecCCchhHHHHHHHHHHHhhcCCCCeEEEe
Q psy13516 85 GIYEKEMSLLKDKGTL-YQIIDHTVHKIGSCMFPARCAGIEHFLHKVKNDVTDLEFVI 141 (284)
Q Consensus 85 gIt~~~l~~a~~~g~r-v~I~nGkly~~~~~~~~~R~~gi~~~L~~~~~~LPDmEfv~ 141 (284)
-.|+.++..+.+.|++ +++ ||.-..+=...+.++.+.+||+.|+=
T Consensus 117 v~TpsEi~~A~~~G~~~vKl------------FPA~~~~g~~~ikal~~p~p~~~fip 162 (216)
T d1mxsa_ 117 ISTPSEIMMGYALGYRRFKL------------FPAEISGGVAAIKAFGGPFGDIRFCP 162 (216)
T ss_dssp ECSHHHHHHHHTTTCCEEEE------------TTHHHHTHHHHHHHHHTTTTTCEEEE
T ss_pred cCCHHHHHHHHHCCCCEEEe------------ccccccccHHHHHHHhcccccCceec
Confidence 3578888888777876 333 67654433567888889999999974
No 9
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=11.66 E-value=79 Score=20.80 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=18.4
Q ss_pred CCHHHHHhhhccccEEEEECCEEEEEe
Q psy13516 86 IYEKEMSLLKDKGTLYQIIDHTVHKIG 112 (284)
Q Consensus 86 It~~~l~~a~~~g~rv~I~nGkly~~~ 112 (284)
+|.+++.+-...+--.+|++|+||=..
T Consensus 5 ~t~~ev~~H~~~~d~Wivi~g~VYDvT 31 (81)
T d1cxya_ 5 FTLEQVAEHHSPDDCWMAIHGKVYDLT 31 (81)
T ss_dssp CCHHHHTTCEETTEEEEEETTEEEECT
T ss_pred cCHHHHHhhCCCCCEEEEECCEEEecc
Confidence 677888654334434788899999654
No 10
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.61 E-value=66 Score=21.73 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=18.4
Q ss_pred CCHHHHHhhhcccc-EEEEECCEEEEEe
Q psy13516 86 IYEKEMSLLKDKGT-LYQIIDHTVHKIG 112 (284)
Q Consensus 86 It~~~l~~a~~~g~-rv~I~nGkly~~~ 112 (284)
+|.+++.+-...+- -.+|++|+||=..
T Consensus 5 ~T~~Ev~~H~~~~~~~Wiii~g~VYDvT 32 (91)
T d1soxa2 5 YTREEVGRHRSPEERVWVTHGTDVFDVT 32 (91)
T ss_dssp ECHHHHTTCEETTTEEEEEETTEEEECT
T ss_pred cCHHHHHHhCCCCCceEEEECCEEEecc
Confidence 57778865433333 3788899999764
Done!