RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13516
(284 letters)
>gnl|CDD|218692 pfam05686, Glyco_transf_90, Glycosyl transferase family 90. This
family of glycosyl transferases are specifically
(mannosyl) glucuronoxylomannan/galactoxylomannan -beta
1,2-xylosyltransferases, EC:2.4.2.-.
Length = 281
Score = 138 bits (350), Expect = 2e-39
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 70 CYLPVIERDLKPFAQ-GIYEKEMSLLKDK-GTLYQIIDHTVH-KIGSCMFPAR----CAG 122
Y I DL+P+ + GI + + K K Y II+ V+ + F R G
Sbjct: 8 DYFRWIHEDLEPWRETGITREMVERAKRKAHFRYVIINGRVYVETYGESFQTRDVFTIWG 67
Query: 123 IEHFLHKVKNDVTDLEFVINTRDYPQVHRH-----QSKPLPMFSFSKTGDYSDIMYPAWA 177
I L K + DLE + N D+P V + + P P+FS+ D DI++P W+
Sbjct: 68 ILQLLRKYPGRLPDLELMFNCGDWPVVKKRDYRGPNANPPPLFSYCGDDDTLDIVFPDWS 127
Query: 178 FWEGGPAIKLYPTGIGRWDKHRKALSQEAAKYPWSKKLNKGFFRGSRTSSE 228
FW G P IGRWD RK L + + W + ++RG+ + +E
Sbjct: 128 FW-GWP-----EVNIGRWDLLRKDLKEGNTRVKWEDREPYAYWRGNPSVAE 172
>gnl|CDD|214773 smart00672, CAP10, Putative lipopolysaccharide-modifying enzyme.
Length = 256
Score = 113 bits (285), Expect = 3e-30
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 134 VTDLEFVINTRDYPQVHRH------QSKPLPMFSFSKTGDYSDIMYPAWAFWEGGPAIKL 187
V DLE + N RD+P +++ Q P P+FS+ + +Y DI++P W+FW G
Sbjct: 2 VPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAG------ 55
Query: 188 YPTGIGR-WDKHRKALSQEAAKYPWSKKLNKGFFRGSRTS-SERDPLIKLSRENSKLIDA 245
+P GR WDK L + + WS K ++RG+ T SER LIK ++ + +L++A
Sbjct: 56 WPEVNGRPWDKDLMELEEGNKRTKWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNA 115
Query: 246 AYTKNQAWKSDADTSNSEIILSIKFS 271
T ++
Sbjct: 116 RITIQDWPGKCDGEEDAPGFKKSPLE 141
>gnl|CDD|165570 PHA03324, PHA03324, nuclear egress membrane protein UL34;
Provisional.
Length = 274
Score = 30.0 bits (67), Expect = 1.1
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 162 FSKTGDYSDIMYPAWAFWEGGPAIKLYPTGIGRWD-----KHRKALSQEAAKYPWSKKLN 216
F+K D ++ A A P I L W K K + Q+ P + +
Sbjct: 88 FTKNAHCGDQIWEAPA-----PTISL-AAAKSLWVSASAVKEMKRI-QKIKNAPLAAMMF 140
Query: 217 KGFFRGSRTS---------SERDP-LIKLSRENSKLIDAAYTKNQAWKSDADTSNSEIIL 266
F+RG + S+ +P LIK+S+ + IDAA +N D+ +
Sbjct: 141 ICFYRGGKNDITIRFAFYKSDSEPNLIKISKCVQEAIDAAAQENLPKPRGFDSPKCAALA 200
Query: 267 SIKFSPMYIFVAREGP 282
M + A EG
Sbjct: 201 ----KKMLMEGAAEGG 212
>gnl|CDD|224148 COG1227, PPX1, Inorganic pyrophosphatase/exopolyphosphatase [Energy
production and conversion].
Length = 311
Score = 28.8 bits (65), Expect = 3.0
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 49 NERLQLILKA--EESYKPCSGIDCYLPVIERDLKPFAQGIYEKEMSLLKDKGTLYQIIDH 106
N +L E+ K + VI D F Q + + + + IIDH
Sbjct: 44 NLETAFVLDYFGVEAPKLVESVKGEKKVILVDHNEFQQSVDDI------EDAEILGIIDH 97
Query: 107 TVHKIGSCMFPA 118
H++ A
Sbjct: 98 --HRLADFETAA 107
>gnl|CDD|226172 COG3646, COG3646, Uncharacterized phage-encoded protein [Function
unknown].
Length = 167
Score = 27.8 bits (62), Expect = 4.6
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 24/113 (21%)
Query: 118 ARCAGIEHFLHKVKNDVTD-------------LEFVINTRDYPQVHRHQSKPLPMFSFSK 164
A G H + + + LEF I + R Q K + MF +K
Sbjct: 21 AEMVGKRH--DNILRSIENLKRDFDQNEKLGSLEFFIESLYL----RGQGKKVKMFEMTK 74
Query: 165 TGDYSDIMYPAWAFWEGGPAIKLYPTGIGRWDKHRKALSQEAAKYPWSKKLNK 217
G I+ E K + R+D+ +AL++ A K N+
Sbjct: 75 AG--FMILVNKLT-GEKVRQFKA--ALVKRFDEMEEALAERAFARALEKPKNE 122
>gnl|CDD|221072 pfam11309, DUF3112, Protein of unknown function (DUF3112). This
eukaryotic family of proteins has no known function.
Length = 160
Score = 27.6 bits (62), Expect = 4.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 2 SKLCMY-FDFDIAIIIVLIYTV-RIGL 26
SK C Y F+F II+ ++Y V R+ L
Sbjct: 131 SKACFYIFNFVFEIIVNILYLVGRVDL 157
>gnl|CDD|220491 pfam09958, DUF2192, Uncharacterized protein conserved in archaea
(DUF2192). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 231
Score = 27.7 bits (62), Expect = 5.8
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 41 GQILSKSSNERLQLILKAEESYKPCSGIDCYLPVIERDLKPF----AQGIYEKEMSLL 94
++L R LI +E Y+ E+ +KPF +Y+KE++ L
Sbjct: 18 SRLLEGEILTREDLIELLQEVYE------------EKGIKPFRGLSPPDLYDKELASL 63
>gnl|CDD|223920 COG0851, MinE, Septum formation topological specificity factor
[Cell division and chromosome partitioning].
Length = 88
Score = 26.5 bits (59), Expect = 6.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 50 ERLQLILKAEESYKPCSGIDCYLPVIERDL 79
ERLQLIL E + YL + +++
Sbjct: 20 ERLQLILAHERAAGLQPD---YLEQLRKEI 46
>gnl|CDD|225923 COG3388, COG3388, Predicted transcriptional regulator
[Transcription].
Length = 101
Score = 26.2 bits (58), Expect = 7.9
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 189 PTGIGRWDKHRKALSQEAAKYPWSKKLNKGFFRGSRTSSERDPLIKLSRENSKLIDAAYT 248
P GI + LS E P K R S E++ +I SR+ + L D
Sbjct: 28 PIGIIK-------LSDETG-MPEHK------VRYSLRVLEQENIISPSRQGAILTDDFPE 73
Query: 249 KNQAWKSDADTSNSEI 264
+ D N E
Sbjct: 74 FIEEIIGDLSEINEEA 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.427
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,454,186
Number of extensions: 1336763
Number of successful extensions: 1014
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 14
Length of query: 284
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 188
Effective length of database: 6,679,618
Effective search space: 1255768184
Effective search space used: 1255768184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)