RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13516
         (284 letters)



>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III
           {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 29.9 bits (66), Expect = 0.29
 Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 16/142 (11%)

Query: 95  KDKGTLYQIIDHTVHKIGSCMF------P--------ARCAGIEHFLHKVKNDVTDLEFV 140
             + TL  ++D TV  +GS M       P         R   I             L  V
Sbjct: 17  GAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQV 76

Query: 141 INT-RDYPQVHRHQSKPLPMFSFSKTGDYSDIMYPAWAFWEGGPAIKLYPTGIGRWDKHR 199
            +  R   ++    ++P  +            +            ++     +G + + R
Sbjct: 77  GDLERILARLALRTARPRDLARMRHAFQQLPELRAQLE-TVDSAPVQALREKMGEFAELR 135

Query: 200 KALSQEAAKYPWSKKLNKGFFR 221
             L +     P     + G   
Sbjct: 136 DLLERAIIDTPPVLVRDGGVIA 157


>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
           {Thermus aquaticus [TaxId: 271]}
          Length = 275

 Score = 27.5 bits (60), Expect = 1.6
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 95  KDKGTLYQIIDHTVHKIGS 113
           + + TL+ ++D T    G 
Sbjct: 1   RGQDTLFSVLDETRTAPGR 19


>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
          Length = 447

 Score = 26.1 bits (57), Expect = 5.3
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 118 ARCAGIEHFLHKVKNDVTDLEFVINTRDYPQVHRHQSKPLPMFSFSKTGDYSDIMYP--A 175
           A   G     H + +      FV++T  Y       SK  P  + +K             
Sbjct: 181 AYDIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDL 240

Query: 176 WAFWEGGPAIKLYPTGIGRWDKHRKALSQEAAKYP 210
                    + +    +G   +    + +EA  +P
Sbjct: 241 ARMVMTYGYVYVATVSMGYSKQQFLKVLKEAESFP 275


>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
           dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
           griseus) [TaxId: 10029]}
          Length = 378

 Score = 25.8 bits (56), Expect = 6.2
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 77  RDLKPFAQGIYEKEMSLLKDKGTLYQIIDHTVHKIGSCMFPARCAGIEHFLHKVKNDVTD 136
            D    AQG+       ++DKG++++ + + +  I           +   +  +     +
Sbjct: 298 ADKIKVAQGV----SGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQ-VRAM-MYSGE 351

Query: 137 LEFVINT 143
           L+F   T
Sbjct: 352 LKFEKRT 358


>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 111

 Score = 24.7 bits (54), Expect = 6.6
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 75  IERDLKPFAQGIYEKEMSLLKDKGTLYQIIDHTVHK--IGSCMFPARCAGIEHFLHKVKN 132
           +  DL+ F   IYE E      KG +  ++  T+    I       R   I +F     N
Sbjct: 3   LNSDLRVFMHHIYEFE------KG-VRSMVLATLANDDIPYAEERLRSRQIPYFAQPTPN 55

Query: 133 D 133
            
Sbjct: 56  T 56


>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}
          Length = 315

 Score = 25.4 bits (55), Expect = 10.0
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 42  QILSKSSNERLQLILKAEESYKPCSGIDCYLPVIERDLKPFAQGIYEKEMSLLKDKGTLY 101
            IL+  SN + Q I      Y    G       +E +LK    G YE     L  K   +
Sbjct: 37  HILATRSNAQRQQIKTD---YTTLFGKH-----LEDELKSELSGNYEAAALALLRKPDEF 88

Query: 102 QIIDHTVHKIGSCMFPARCAGIE 124
                 +H     +   + A I+
Sbjct: 89  LA--EQLHAAMKGLGTDKNALID 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,099,573
Number of extensions: 50084
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 8
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)