BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13517
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
 pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
 pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
 pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
 pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
           Reductase B3 In Complex With Two Nadp Molecules
 pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
           Reductase B3 In Complex With Two Nadp Molecules
 pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
           Reductase B3 In Complex With Two Nadp Molecules
 pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
           Reductase B3 In Complex With Two Nadp Molecules
          Length = 323

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 7/37 (18%)

Query: 144 NKHASKQEIRDMLHFFMHHDDVAEKIATRGYEFVMKN 180
           NKH  K E+  +L       D+ EKI  RG EFV+K 
Sbjct: 77  NKHIEKYEVPVLL-------DIVEKIENRGDEFVVKT 106


>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
           Mutant C147a
 pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
           Mutant C147a
 pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
           Mutant C147a
 pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
           Mutant C147a
          Length = 323

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 7/37 (18%)

Query: 144 NKHASKQEIRDMLHFFMHHDDVAEKIATRGYEFVMKN 180
           NKH  K E+  +L       D+ EKI  RG EFV+K 
Sbjct: 77  NKHIEKYEVPVLL-------DIVEKIENRGDEFVVKT 106


>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
          Length = 921

 Score = 27.7 bits (60), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 20  TSSERDPL---IKLSRENSKLIDAAYTKNQAWKSDADTLHAPPAEEVSFEEHCK 70
           T +  DP    I ++     ++D   T    W+ D +   A P +EV +E H +
Sbjct: 388 TQTAVDPYARAISVNATRGMIVDLKATDPAGWQGDHEQTPANPVDEVIYEAHVR 441


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,260,968
Number of Sequences: 62578
Number of extensions: 249870
Number of successful extensions: 710
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)