Query psy13517
Match_columns 209
No_of_seqs 122 out of 783
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 21:23:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13517.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13517hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 78.7 1.4 9.9E-05 34.1 5.2 32 149-180 323-354 (370)
2 d2bfwa1 c.87.1.8 (A:218-413) G 70.9 13 0.00091 26.7 8.9 92 61-180 98-195 (196)
3 d2bisa1 c.87.1.8 (A:1-437) Gly 68.5 9.1 0.00066 30.2 8.1 50 149-202 380-430 (437)
4 d2f9fa1 c.87.1.8 (A:2-167) Fir 56.6 5.5 0.0004 28.1 4.1 68 80-175 97-165 (166)
5 d2bida_ f.1.4.1 (A:) Proapopto 41.9 16 0.0012 27.5 4.7 35 173-209 112-146 (197)
6 d2pq6a1 c.87.1.10 (A:8-480) (I 27.1 90 0.0066 23.9 7.4 53 143-196 413-469 (473)
7 d2vcha1 c.87.1.10 (A:6-476) Hy 25.8 68 0.005 24.7 6.4 52 147-199 409-464 (471)
8 d1xp8a2 d.48.1.1 (A:283-341) R 21.6 46 0.0034 20.1 3.5 26 150-175 31-56 (59)
9 d1u94a2 d.48.1.1 (A:269-328) R 21.5 39 0.0028 20.5 3.1 26 150-175 32-57 (60)
10 d2oy9a1 a.276.1.1 (A:6-90) Unc 21.2 20 0.0015 23.6 1.7 20 141-160 2-21 (85)
11 d2nzwa1 c.87.1.11 (A:1-349) Al 20.3 1.3E+02 0.0096 24.0 7.2 76 66-169 227-307 (349)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=78.68 E-value=1.4 Score=34.11 Aligned_cols=32 Identities=6% Similarity=0.174 Sum_probs=29.5
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q psy13517 149 KQEIRDMLHFFMHHDDVAEKIATRGYEFVMKN 180 (209)
Q Consensus 149 ~~dL~~~i~~~~~~~~~a~~IA~~~~~~a~~~ 180 (209)
.++|.++|..+.+||+..++++++|+++++++
T Consensus 323 ~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 323 QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999999775
No 2
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=70.87 E-value=13 Score=26.70 Aligned_cols=92 Identities=8% Similarity=-0.087 Sum_probs=56.8
Q ss_pred CCCCHHhhh----cceeEEeeC-CcccccchHHHhcCCceEEeeccchhhhhhccccccccccccccccchhhhccCCCC
Q psy13517 61 EEVSFEEHC----KYKYLFNFR-GVAASFRFKHLFLCKSLVFHVGDEWIEFFYPAMKPWVSHLKNIARDEWIEFFYPAMK 135 (209)
Q Consensus 61 ~~~~~~~~~----~yKyll~~d-G~~~S~Rl~~ll~~~Svvl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~ 135 (209)
..++.++.. ....+|.+. .-+++.-+.-.|+||-.|+........-+ +.
T Consensus 98 ~~~~~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~~~~~~~~e~--------------------------i~ 151 (196)
T d2bfwa1 98 EMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI--------------------------IT 151 (196)
T ss_dssp SCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHH--------------------------CC
T ss_pred eccccccchhccccccccccccccccccccchhhhhcCceeeecCCCcccee--------------------------ec
Confidence 345555542 223444322 23566778888999999998874332111 11
Q ss_pred CcceEEEecCCCChhhHHHHHHHhcc-CHHHHHHHHHHHHHHHHHh
Q psy13517 136 PWVHYVPVNKHASKQEIRDMLHFFMH-HDDVAEKIATRGYEFVMKN 180 (209)
Q Consensus 136 P~~HyVpv~~d~s~~dL~~~i~~~~~-~~~~a~~IA~~~~~~a~~~ 180 (209)
....|+ +..+ ..+++.++|..+.. +++..++|.++|++.+.+|
T Consensus 152 ~~~g~~-~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~f 195 (196)
T d2bfwa1 152 NETGIL-VKAG-DPGELANAILKALELSRSDLSKFRENCKKRAMSF 195 (196)
T ss_dssp TTTCEE-ECTT-CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred CCceee-ECCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 222333 4332 25689998877554 7889999999999988764
No 3
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=68.53 E-value=9.1 Score=30.23 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=37.3
Q ss_pred hhhHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhcC
Q psy13517 149 KQEIRDMLHFFM-HHDDVAEKIATRGYEFVMKNLKMKHVTQYWEVLLSKYAALLK 202 (209)
Q Consensus 149 ~~dL~~~i~~~~-~~~~~a~~IA~~~~~~a~~~ls~~~~~~Y~~~ll~eya~l~~ 202 (209)
.++|.++|..+. .+++..++++++|++.+.+ +|.+.+. .+++.-|.++.+
T Consensus 380 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~-~s~~~~a---~~~~~iY~~~i~ 430 (437)
T d2bisa1 380 PGELANAILKALELSRSDLSKFRENCKKRAMS-FSWEKSA---ERYVKAYTGSID 430 (437)
T ss_dssp HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHH-SCHHHHH---HHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CCHHHHH---HHHHHHHHHHHH
Confidence 569999998765 4778999999999998876 5866654 455555666653
No 4
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=56.57 E-value=5.5 Score=28.09 Aligned_cols=68 Identities=15% Similarity=-0.006 Sum_probs=41.1
Q ss_pred cccccchHHHhcCCceEEeeccchhhhhhccccccccccccccccchhhhccCCCCCcceEEEecCCCChhhHHHHHHHh
Q psy13517 80 VAASFRFKHLFLCKSLVFHVGDEWIEFFYPAMKPWVSHLKNIARDEWIEFFYPAMKPWVHYVPVNKHASKQEIRDMLHFF 159 (209)
Q Consensus 80 ~~~S~Rl~~ll~~~Svvl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~P~~HyVpv~~d~s~~dL~~~i~~~ 159 (209)
-+++.-+.-.|+||-.|+..+.... .+.+.+...-.-+..| .+++.++|..+
T Consensus 97 e~~~~~~~Ea~~~g~pvi~s~~~~~--------------------------~e~i~~~~~g~~~~~d--~~~~~~~i~~l 148 (166)
T d2f9fa1 97 EDFGLTPIEAMASGKPVIAVNEGGF--------------------------KETVINEKTGYLVNAD--VNEIIDAMKKV 148 (166)
T ss_dssp CCSCHHHHHHHHTTCCEEEESSHHH--------------------------HHHCCBTTTEEEECSC--HHHHHHHHHHH
T ss_pred ccccccccccccccccceeecCCcc--------------------------eeeecCCcccccCCCC--HHHHHHHHHHH
Confidence 3455566677888888888764322 1122333332224455 56999999999
Q ss_pred ccCHHHH-HHHHHHHHH
Q psy13517 160 MHHDDVA-EKIATRGYE 175 (209)
Q Consensus 160 ~~~~~~a-~~IA~~~~~ 175 (209)
.+|+++. +.+.++|++
T Consensus 149 ~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 149 SKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp HHCTTTTHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHhC
Confidence 9987543 345555554
No 5
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.90 E-value=16 Score=27.48 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHhhcCCCCccCC
Q psy13517 173 GYEFVMKNLKMKHVTQYWEVLLSKYAALLKYKPRLQK 209 (209)
Q Consensus 173 ~~~~a~~~ls~~~~~~Y~~~ll~eya~l~~~~p~~~~ 209 (209)
++.|...-|+.+++..|..+++.+. ++.+.|++++
T Consensus 112 a~~f~N~~LseEd~r~~LAaale~l--~qt~P~d~eq 146 (197)
T d2bida_ 112 ALQLRNTSRSEEDRNRDLATALEQL--LQAYPRDMEK 146 (197)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHHHH--HTTSCCSSCS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHH--HHHCCCchhH
Confidence 4568889999999999999999988 6778887764
No 6
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=27.06 E-value=90 Score=23.91 Aligned_cols=53 Identities=9% Similarity=0.222 Sum_probs=32.3
Q ss_pred ecCCCChhhHHHHHHHhccCHHHHHHHHHHHHHHH---HHhcChhhH-HHHHHHHHHH
Q psy13517 143 VNKHASKQEIRDMLHFFMHHDDVAEKIATRGYEFV---MKNLKMKHV-TQYWEVLLSK 196 (209)
Q Consensus 143 v~~d~s~~dL~~~i~~~~~~~~~a~~IA~~~~~~a---~~~ls~~~~-~~Y~~~ll~e 196 (209)
++.+++.++|.++|+-+.++|.- ++.++|++++. ++-+.+.+. .+....+++|
T Consensus 413 l~~~~t~~~l~~ai~~vl~d~~~-~~~r~~a~~l~~~~~~a~~~gg~s~~~~~~~i~~ 469 (473)
T d2pq6a1 413 IDTNVKREELAKLINEVIAGDKG-KKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKD 469 (473)
T ss_dssp CCSSCCHHHHHHHHHHHHTSHHH-HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred eCCCcCHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55667788999999999988752 34455555544 344444432 3445555544
No 7
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.76 E-value=68 Score=24.75 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=35.9
Q ss_pred CChhhHHHHHHHhccCHHHHHHHHHHHHHH---HHHhcChhhH-HHHHHHHHHHHHh
Q psy13517 147 ASKQEIRDMLHFFMHHDDVAEKIATRGYEF---VMKNLKMKHV-TQYWEVLLSKYAA 199 (209)
Q Consensus 147 ~s~~dL~~~i~~~~~~~~~a~~IA~~~~~~---a~~~ls~~~~-~~Y~~~ll~eya~ 199 (209)
++.++|.++|+-+.++++ ++.+.+|+.++ +++.+++.+. .+.+..++.+|.+
T Consensus 409 ~t~~~l~~ai~~vl~~~~-~~~~r~ra~~l~e~~~~a~~~gG~s~~~~~~~~~~~~~ 464 (471)
T d2vcha1 409 VRREEVARVVKGLMEGEE-GKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKA 464 (471)
T ss_dssp CCHHHHHHHHHHHHTSTH-HHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 456799999999998764 44566666654 3555666554 5667888888765
No 8
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.60 E-value=46 Score=20.08 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=21.0
Q ss_pred hhHHHHHHHhccCHHHHHHHHHHHHH
Q psy13517 150 QEIRDMLHFFMHHDDVAEKIATRGYE 175 (209)
Q Consensus 150 ~dL~~~i~~~~~~~~~a~~IA~~~~~ 175 (209)
+--+.+.+||++||+.++.|-+.-++
T Consensus 31 QGre~a~~~L~enpel~~eie~~i~~ 56 (59)
T d1xp8a2 31 QGKEKTIAYIAERPEMEQEIRDRVMA 56 (59)
T ss_dssp ESHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 46678999999999999999765544
No 9
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.46 E-value=39 Score=20.50 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.7
Q ss_pred hhHHHHHHHhccCHHHHHHHHHHHHH
Q psy13517 150 QEIRDMLHFFMHHDDVAEKIATRGYE 175 (209)
Q Consensus 150 ~dL~~~i~~~~~~~~~a~~IA~~~~~ 175 (209)
+-=+.+.+||++||+.++.|.+.-++
T Consensus 32 QGre~~~~~L~enpel~~eie~~ire 57 (60)
T d1u94a2 32 QGKANATAWLKDNPETAKEIEKKVRE 57 (60)
T ss_dssp SSHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 36678889999999999999877655
No 10
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus halodurans [TaxId: 86665]}
Probab=21.22 E-value=20 Score=23.63 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=18.2
Q ss_pred EEecCCCChhhHHHHHHHhc
Q psy13517 141 VPVNKHASKQEIRDMLHFFM 160 (209)
Q Consensus 141 Vpv~~d~s~~dL~~~i~~~~ 160 (209)
.|++.|+|.+++.+++.+++
T Consensus 2 yPld~dWsteEii~V~~F~~ 21 (85)
T d2oy9a1 2 LPISLDWSTEEVIDVVHFFQ 21 (85)
T ss_dssp CCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 38999999999999999987
No 11
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]}
Probab=20.30 E-value=1.3e+02 Score=24.04 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=50.3
Q ss_pred HhhhcceeEEeeCCcccc----cchHHHhcCCceEEeeccc-hhhhhhccccccccccccccccchhhhccCCCCCcceE
Q psy13517 66 EEHCKYKYLFNFRGVAAS----FRFKHLFLCKSLVFHVGDE-WIEFFYPAMKPWVSHLKNIARDEWIEFFYPAMKPWVHY 140 (209)
Q Consensus 66 ~~~~~yKyll~~dG~~~S----~Rl~~ll~~~Svvl~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~P~~Hy 140 (209)
+-..+|||.|.+|-.... -.+---+.+|||++-.... ..++| |--=|
T Consensus 227 ~~l~~ykF~l~~EN~~~~~YvTEKi~da~~~g~iPIy~G~~~i~~~f----------------------------~~~sf 278 (349)
T d2nzwa1 227 EFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDF----------------------------NPKSF 278 (349)
T ss_dssp HHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTS----------------------------CGGGS
T ss_pred HHHhCCCeEEEECCcCCCCCcchHHHHHHhCCeEEEEECCCcHHHcC----------------------------CCccE
Confidence 346999999999975433 3677789999999988743 23332 22235
Q ss_pred EEecCCCChhhHHHHHHHhccCHHHHHHH
Q psy13517 141 VPVNKHASKQEIRDMLHFFMHHDDVAEKI 169 (209)
Q Consensus 141 Vpv~~d~s~~dL~~~i~~~~~~~~~a~~I 169 (209)
|-+..=-+.++|.+.|..+.++++.-.++
T Consensus 279 I~~~df~s~~el~~~i~~l~~n~~~Y~~~ 307 (349)
T d2nzwa1 279 VNVHDFKNFDEAIDYIKYLHTHKNAYLDM 307 (349)
T ss_dssp EEGGGSSSHHHHHHHHHHHHTCHHHHHHH
T ss_pred EEhhhCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 65543223567788888777787655443
Done!