RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13517
         (209 letters)



>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 26.8 bits (58), Expect = 2.2
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 125 EWIEFFYPAMKPWVHYVPVNKHASKQEIRDMLHFFMHHDDVAEKIATRGYEFVMKNLKMK 184
           ++      A+   V   P N   +++E+ + ++           ++ +G + ++   K  
Sbjct: 84  QFFMPVLGALFIGVAVAPANDIYNERELLNSMN---ISQPTVVFVSKKGLQKILNVQKKL 140

Query: 185 HVTQYWEVLLSK 196
            + Q   ++ SK
Sbjct: 141 PIIQKIIIMDSK 152


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 26.4 bits (57), Expect = 3.3
 Identities = 6/33 (18%), Positives = 11/33 (33%)

Query: 125 EWIEFFYPAMKPWVHYVPVNKHASKQEIRDMLH 157
           E I       +    +  V    S   +RD ++
Sbjct: 128 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRIN 160


>d1rlha_ d.256.1.1 (A:) Hypothetical protein Ta1353 {Archaeon
          Thermoplasma acidophilum [TaxId: 2303]}
          Length = 151

 Score = 25.5 bits (56), Expect = 4.0
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 11 GLGFFRGS-----RTSSERDPLIKLSRENSKLIDAAYT 43
          G+GF   S     R     D L+K   EN + I A +T
Sbjct: 53 GIGFSEASGDRLIRYDGNDDDLVKACIENIRRISAGHT 90


>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
           specificity factor subunit 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 451

 Score = 25.9 bits (55), Expect = 4.8
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 138 VHYVPVNKHASKQEIRDMLHFF 159
           V Y+  + H   Q+  + +   
Sbjct: 380 VDYISFSAHTDYQQTSEFIRAL 401


>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091)
          {Thermus thermophilus [TaxId: 274]}
          Length = 161

 Score = 25.0 bits (55), Expect = 5.2
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 11 GLGFFRGS-----RTSSERDPLIKLSRENSKLIDAAYT 43
          GL F   S     R S   + L++L+ +N   +   + 
Sbjct: 44 GLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHV 81


>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 262

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 6/100 (6%)

Query: 68  HCKYKYLFNFRGVAASFRFKHLFLCKSLVFHVGDEWIEFFYPA------MKPWVSHLKNI 121
                 +   RG    +R  HLF  + + F  GD   + F         M  +       
Sbjct: 95  LYNSAVVVGPRGYIGKYRKIHLFYREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPES 154

Query: 122 ARDEWIEFFYPAMKPWVHYVPVNKHASKQEIRDMLHFFMH 161
           AR   ++       P    +P    A      +   + + 
Sbjct: 155 ARTLALKGAEIIAHPANLVMPYAPRAMPIRALENRVYTIT 194


>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's
           yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 320

 Score = 25.3 bits (55), Expect = 6.4
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 126 WIEFFYPAMKPWVHYVPVNK 145
           W E+F   +  WVH     +
Sbjct: 213 WCEYFSNFLNRWVHVDSCEQ 232


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 830,317
Number of extensions: 38652
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 23
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)