BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1352
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 139/202 (68%), Positives = 159/202 (78%)
Query: 96 FVYETEHFNGVGELLEILGSIINGFALPLKNEHXXXXXXXXXXXXXXXXXSLYHAQLAYC 155
F+YETEH NG+ ELLEILGSIINGFALPLK EH S+YH QLAYC
Sbjct: 211 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 270
Query: 156 VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQ 215
VVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFRQ
Sbjct: 271 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 330
Query: 216 IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALV 275
+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L+
Sbjct: 331 LAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLI 390
Query: 276 YNVLKTFMEMNSRLFDELTANY 297
YN LK FMEMN +LFD+ T +
Sbjct: 391 YNALKLFMEMNQKLFDDCTQQF 412
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 57/71 (80%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 382
VAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L+YN LK FMEMN
Sbjct: 342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401
Query: 383 SRLFDELTANY 393
+LFD+ T +
Sbjct: 402 QKLFDDCTQQF 412
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 294 bits (753), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 139/202 (68%), Positives = 159/202 (78%)
Query: 96 FVYETEHFNGVGELLEILGSIINGFALPLKNEHXXXXXXXXXXXXXXXXXSLYHAQLAYC 155
F+YETEH NG+ ELLEILGSIINGFALPLK EH S+YH QLAYC
Sbjct: 182 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 241
Query: 156 VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQ 215
VVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFRQ
Sbjct: 242 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 301
Query: 216 IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALV 275
+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L+
Sbjct: 302 LAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLI 361
Query: 276 YNVLKTFMEMNSRLFDELTANY 297
YN LK FMEMN +LFD+ T +
Sbjct: 362 YNALKLFMEMNQKLFDDCTQQF 383
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 57/71 (80%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 382
VAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L+YN LK FMEMN
Sbjct: 313 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 372
Query: 383 SRLFDELTANY 393
+LFD+ T +
Sbjct: 373 QKLFDDCTQQF 383
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 139/202 (68%), Positives = 159/202 (78%)
Query: 96 FVYETEHFNGVGELLEILGSIINGFALPLKNEHXXXXXXXXXXXXXXXXXSLYHAQLAYC 155
F+YETEH NG+ ELLEILGSIINGFALPLK EH S+YH QLAYC
Sbjct: 178 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 237
Query: 156 VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQ 215
VVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFRQ
Sbjct: 238 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 297
Query: 216 IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALV 275
+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L+
Sbjct: 298 LAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLI 357
Query: 276 YNVLKTFMEMNSRLFDELTANY 297
YN LK FMEMN +LFD+ T +
Sbjct: 358 YNALKLFMEMNQKLFDDCTQQF 379
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 57/71 (80%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 382
VAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L+YN LK FMEMN
Sbjct: 309 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 368
Query: 383 SRLFDELTANY 393
+LFD+ T +
Sbjct: 369 QKLFDDCTQQF 379
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 156/204 (76%)
Query: 96 FVYETEHFNGVGELLEILGSIINGFALPLKNEHXXXXXXXXXXXXXXXXXSLYHAQLAYC 155
F+YETEH NG+ ELLEILGSIINGFALPLK EH S+YH QLAYC
Sbjct: 174 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 233
Query: 156 VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQ 215
VVQFLEKD TLTEPVV LLKYWP+T S KEV FL E+EEILDVIEP++F+ I EPLFRQ
Sbjct: 234 VVQFLEKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQ 293
Query: 216 IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALV 275
+AKCVSSPHFQVAERALY+WNNEYI SL+ +N ++PI FP+LYR SK HWN+TI L+
Sbjct: 294 LAKCVSSPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLI 353
Query: 276 YNVLKTFMEMNSRLFDELTANYKA 299
YN LK F E N +LFD+ T +KA
Sbjct: 354 YNALKLFXEXNQKLFDDCTQQFKA 377
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 382
VAERALY+WNNEYI SL+ +N ++PI FP+LYR SK HWN+TI L+YN LK F E N
Sbjct: 305 VAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALKLFXEXN 364
Query: 383 SRLFDELTANYKA 395
+LFD+ T +KA
Sbjct: 365 QKLFDDCTQQFKA 377
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/169 (71%), Positives = 135/169 (79%)
Query: 96 FVYETEHFNGVGELLEILGSIINGFALPLKNEHXXXXXXXXXXXXXXXXXSLYHAQLAYC 155
F+YETEH NG+ ELLEILGSIINGFALPLK EH S+YH QLAYC
Sbjct: 223 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 282
Query: 156 VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQ 215
VVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFRQ
Sbjct: 283 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 342
Query: 216 IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISK 264
+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK
Sbjct: 343 LAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISK 360
VAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK
Sbjct: 354 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391
>pdb|2BGI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus Complexed With Three Molecules Of
The Detergent N-Heptyl-Beta-D-Thioglucoside At 1.7
Angstroms
pdb|2BGJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2VNH|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Ii At
2. 27 Angstroms Resolution
pdb|2VNI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With 2p-Amp At 2.37
Angstroms Resolution
pdb|2VNJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form I At
2. 13 Angstroms Resolution
pdb|2VNK|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
pdb|2VNK|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
pdb|2VNK|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
pdb|2VNK|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
Length = 272
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 150 AQLAYC--VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEIL 197
A+L Y +V+ L++DP + E +V+G LKY+P T +++E +G I + L
Sbjct: 161 AELEYGRQLVEALQEDPLIGE-LVEGKLKYYP-TTTREEFHHMGRITDNL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,622,133
Number of Sequences: 62578
Number of extensions: 400374
Number of successful extensions: 1127
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 11
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)