Query psy1352
Match_columns 399
No_of_seqs 241 out of 383
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:27:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fga_B Serine/threonine-protei 100.0 4.1E-76 1.4E-80 596.5 11.9 276 36-311 102-393 (403)
2 2npp_B PP2A, B subunit, serine 100.0 2.9E-74 1E-78 590.7 18.9 276 36-311 135-426 (449)
3 2jak_A Serine/threonine-protei 100.0 1E-63 3.5E-68 504.4 15.5 230 36-265 147-392 (392)
4 3fga_B Serine/threonine-protei 100.0 3E-38 1E-42 319.8 -0.5 181 190-398 188-384 (403)
5 2npp_B PP2A, B subunit, serine 100.0 1.1E-36 3.8E-41 312.4 2.7 181 190-398 221-417 (449)
6 2jak_A Serine/threonine-protei 99.9 9.3E-25 3.2E-29 220.6 -0.7 144 190-361 233-392 (392)
7 1ibr_B P95, importin beta-1 su 93.2 0.63 2.1E-05 45.0 11.5 156 123-287 82-249 (462)
8 4fdd_A Transportin-1; heat rep 91.9 0.79 2.7E-05 49.2 11.2 201 114-333 73-282 (852)
9 2bpt_A Importin beta-1 subunit 91.5 2.8 9.6E-05 44.1 14.7 195 124-333 88-292 (861)
10 2qk1_A Protein STU2; STU2P, XM 80.6 28 0.00095 31.9 13.3 134 102-236 74-216 (249)
11 1qgr_A Protein (importin beta 80.5 8 0.00027 40.7 10.7 157 124-289 83-251 (876)
12 2qk1_A Protein STU2; STU2P, XM 77.4 19 0.00064 33.0 11.0 157 187-379 34-219 (249)
13 2of3_A ZYG-9; multifunctional 76.2 53 0.0018 31.0 19.3 177 182-388 59-245 (266)
14 1u6g_C TIP120 protein, CAND1; 74.6 34 0.0012 38.1 14.1 100 184-285 492-599 (1230)
15 2km4_A Regulator of TY1 transp 69.7 10 0.00035 32.3 6.6 84 157-240 26-118 (142)
16 1qgr_A Protein (importin beta 69.2 1.1E+02 0.0039 31.8 20.2 150 190-360 585-744 (876)
17 4fdd_A Transportin-1; heat rep 66.9 1.2E+02 0.0041 32.1 15.8 203 170-393 630-838 (852)
18 1u6g_C TIP120 protein, CAND1; 66.2 69 0.0024 35.6 14.2 215 152-381 353-599 (1230)
19 4fu3_A Regulation of nuclear P 65.1 8.6 0.00029 32.0 5.1 86 152-237 22-113 (135)
20 1ibr_B P95, importin beta-1 su 64.4 98 0.0033 29.3 15.5 146 211-381 259-438 (462)
21 2qk2_A LP04448P; mini spindles 63.3 79 0.0027 27.8 12.7 131 102-236 70-201 (242)
22 1sz9_A PCF11 protein; RNA poly 61.1 16 0.00055 31.3 6.2 90 149-238 23-115 (144)
23 2qk2_A LP04448P; mini spindles 59.5 93 0.0032 27.4 13.3 168 182-379 28-204 (242)
24 2bpt_A Importin beta-1 subunit 57.1 1.8E+02 0.0063 30.1 16.7 96 185-284 385-482 (861)
25 3ibv_A Exportin-T; karyopherin 52.4 72 0.0025 35.4 11.1 160 110-282 64-258 (980)
26 1oks_A RNA polymerase alpha su 45.3 23 0.00079 25.6 3.7 46 111-158 5-50 (56)
27 3tjz_B Coatomer subunit gamma; 44.8 2.3E+02 0.0079 27.6 14.1 177 182-393 40-218 (355)
28 2x19_B Importin-13; nuclear tr 39.3 3.8E+02 0.013 28.5 17.1 103 105-237 739-843 (963)
29 1w63_A Adapter-related protein 32.7 3.3E+02 0.011 27.9 11.9 193 58-288 14-212 (618)
30 1xqr_A HSPBP1 protein; armadil 32.0 3.2E+02 0.011 25.5 11.2 177 186-389 57-247 (296)
31 4flb_A Regulation of nuclear P 31.0 99 0.0034 25.3 6.2 83 152-237 23-112 (132)
32 1xl3_C Protein type A, secreti 29.8 63 0.0021 25.9 4.4 49 156-205 12-60 (92)
33 1eyh_A Epsin; superhelix of he 25.8 2.8E+02 0.0096 23.5 8.3 101 171-284 10-122 (144)
34 1wa5_C Importin alpha RE-expor 25.7 4E+02 0.014 28.7 11.5 115 109-223 425-560 (960)
35 3gjx_A Exportin-1; transport, 25.2 5.3E+02 0.018 28.9 12.5 218 53-284 23-275 (1073)
36 3m1i_C Exportin-1; heat repeat 24.6 7E+02 0.024 27.1 13.7 173 55-235 13-219 (1049)
37 4ffb_C Protein STU2; tubulin f 23.8 3.9E+02 0.013 23.9 12.3 136 100-236 66-208 (278)
38 3b2a_A TON_1937, putative unch 23.1 2.9E+02 0.01 26.1 8.4 120 108-237 94-215 (265)
39 3onk_A Epsin-3, ENT3; helix, p 22.1 3.7E+02 0.013 23.0 8.9 91 193-291 32-134 (150)
40 2x1g_F Cadmus; transport prote 21.5 4.8E+02 0.017 27.8 11.1 189 73-296 716-918 (971)
No 1
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=4.1e-76 Score=596.50 Aligned_cols=276 Identities=60% Similarity=0.981 Sum_probs=256.3
Q ss_pred cceeeeeehhcccCCCcccc-----hhhHH-HHhhhhcc---ccHHHHHHHHHHHhccCC--Cccc-----cccccceec
Q psy1352 36 SIRVTTFSFTLRTSGFMNQF-----RIDLA-HLLRHFLR---DSRNLLVDFIWACSNSFS--SPFV-----KSDQEFVYE 99 (399)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-----~id~~-~l~~~~~s---d~R~li~~~~~~~~~~~~--~~f~-----~~~~~fiye 99 (399)
+++-++|.-|+..+.|+++. +-+++ +|++.|.| +||+.+..++..+++||. |.|+ .++++||||
T Consensus 102 qlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye 181 (403)
T 3fga_B 102 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 181 (403)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 45677888888888888763 44445 99999998 666799999998888883 3333 456999999
Q ss_pred cCCccCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCCCChHHHHHHhhccCC
Q psy1352 100 TEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWP 179 (399)
Q Consensus 100 ~~~~~GI~ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP 179 (399)
+++||||+|||||+||||||||+|||+||++||.+||+||||+++++.||+||+||++||++|||+|++++++||+||||
T Consensus 182 ~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP 261 (403)
T 3fga_B 182 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWP 261 (403)
T ss_dssp TCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCC
T ss_pred cccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHHH
Q psy1352 180 RTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPAL 259 (399)
Q Consensus 180 ~tns~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~L 259 (399)
+|||+|||+||+|+++||+.++|++|.+++.|||++||+|++|+|+|||||||++|+|+++++++++|++.++|+++|+|
T Consensus 262 ~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 262 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCccccc
Q psy1352 260 YRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFS 311 (399)
Q Consensus 260 ~~~s~~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~ 311 (399)
++++++|||++|+++|.||+|++||||+++|++|+++|++++++++.+...|
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r 393 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKER 393 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776555444
No 2
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.9e-74 Score=590.67 Aligned_cols=276 Identities=60% Similarity=0.965 Sum_probs=255.8
Q ss_pred cceeeeeehhcccCCCcccc-----hhhHH-HHhhhhcc---ccHHHHHHHHHHHhccCCCccc-------cccccceec
Q psy1352 36 SIRVTTFSFTLRTSGFMNQF-----RIDLA-HLLRHFLR---DSRNLLVDFIWACSNSFSSPFV-------KSDQEFVYE 99 (399)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-----~id~~-~l~~~~~s---d~R~li~~~~~~~~~~~~~~f~-------~~~~~fiye 99 (399)
+++-++|--|+..+.|.++. +-+++ +|++.|.| +||+.+..++..+++||...+. .++++||||
T Consensus 135 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e 214 (449)
T 2npp_B 135 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 214 (449)
T ss_dssp HHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778888899988887663 44555 99999998 6667999999999998855542 345999999
Q ss_pred cCCccCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCCCChHHHHHHhhccCC
Q psy1352 100 TEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWP 179 (399)
Q Consensus 100 ~~~~~GI~ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP 179 (399)
+++||||+|||||+||||||||+|||+||++|+.+||+|||++++++.||+||+||++||++|||+|++++++||+||||
T Consensus 215 ~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP 294 (449)
T 2npp_B 215 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWP 294 (449)
T ss_dssp CSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHHH
Q psy1352 180 RTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPAL 259 (399)
Q Consensus 180 ~tns~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~L 259 (399)
+|||+|||+||+||++||+.++|++|.+++.|||++||+|++|+|+|||||||++|+|+++++++++|++.++|+++|+|
T Consensus 295 ~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 295 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCccccc
Q psy1352 260 YRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFS 311 (399)
Q Consensus 260 ~~~s~~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~ 311 (399)
++++++|||++|+++|.+|++++||||+++|++|+++|++++++++.+...|
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~~~~~r 426 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKER 426 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877665444343
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1e-63 Score=504.39 Aligned_cols=230 Identities=62% Similarity=0.996 Sum_probs=207.9
Q ss_pred cceeeeeehhcccCCCccc-----chhhHH-HHhhhhcc---ccHHHHHHHHHHHhccCCCccc-------cccccceec
Q psy1352 36 SIRVTTFSFTLRTSGFMNQ-----FRIDLA-HLLRHFLR---DSRNLLVDFIWACSNSFSSPFV-------KSDQEFVYE 99 (399)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-----~~id~~-~l~~~~~s---d~R~li~~~~~~~~~~~~~~f~-------~~~~~fiye 99 (399)
+++-++|--|+..+.|.++ ++.+++ +|++.|.| +||+.+..++..+++||...+. .++++||||
T Consensus 147 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye 226 (392)
T 2jak_A 147 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 226 (392)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677788889998888765 355556 99999998 6667999999999988855442 445999999
Q ss_pred cCCccCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCCCChHHHHHHhhccCC
Q psy1352 100 TEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWP 179 (399)
Q Consensus 100 ~~~~~GI~ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP 179 (399)
+++||||+|||||+||||||||+|||+||++|+.+||+||||+++++.||+||+||++||++|||+|++++++||+||||
T Consensus 227 ~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP 306 (392)
T 2jak_A 227 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWP 306 (392)
T ss_dssp SCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSC
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHHH
Q psy1352 180 RTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPAL 259 (399)
Q Consensus 180 ~tns~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~L 259 (399)
+|||+|||+||+|+++||+.+++++|.+++.|||++||+|++|+|+|||||||++|+|+++++++++|++.++|+++|+|
T Consensus 307 ~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ilPii~~~L 386 (392)
T 2jak_A 307 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 386 (392)
T ss_dssp SSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--
T ss_pred CCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCcHHHHHHHHhhhccchhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy1352 260 YRISKE 265 (399)
Q Consensus 260 ~~~s~~ 265 (399)
++++++
T Consensus 387 ~~~s~~ 392 (392)
T 2jak_A 387 YRNSKT 392 (392)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999864
No 4
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=3e-38 Score=319.82 Aligned_cols=181 Identities=39% Similarity=0.721 Sum_probs=159.0
Q ss_pred HHHHHHHHhcc----------ChhhH-HhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHH
Q psy1352 190 LGEIEEILDVI----------EPTQF-INIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPA 258 (399)
Q Consensus 190 L~ELeeILe~i----------~~~eF-~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~ 258 (399)
+.|+.||++++ ++..| .+++.|||+ ++|++.+|.|+++ ++++++++++....+++-+.
T Consensus 188 IaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk--~~~~~~y~~qL~y---------cv~qf~eKDp~L~~~vi~~L 256 (403)
T 3fga_B 188 IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHK--VKSLSVYHPQLAY---------CVVQFLEKDSTLTEPVVMAL 256 (403)
T ss_dssp HHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGG--STTGGGTHHHHHH---------HHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHc--CCcchhhHHHHHH---------HHHHHHHhCchhHHHHHHHH
Confidence 46888888765 23444 789999999 9999999999998 78999999999998887775
Q ss_pred HHHhhhcCCcH---HHHHHHHHHHHHHHH-hcHHHHHHHHHHHHhhhhCCCCccccc-ccccCCCchhHhhhHhhhccch
Q psy1352 259 LYRISKEHWNQ---TIVALVYNVLKTFME-MNSRLFDELTANYKAERQNSPFGHAFS-TSLAMPRDELAVAERALYFWNN 333 (399)
Q Consensus 259 L~~~s~~HWn~---tV~~la~nvLk~l~e-~d~~lF~~~~~~~~~~~~~~~~~~~~~-~~~ci~s~hfQVAEraL~~wnN 333 (399)
| + |||. ..+.+..+.+..+++ ++|.-|.++.. +.|+ +++|++|+|||||||||++|||
T Consensus 257 L-k----~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~------------~lf~~la~ci~S~hfqVAErAL~~wnN 319 (403)
T 3fga_B 257 L-K----YWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME------------PLFRQLAKCVSSPHFQVAERALYYWNN 319 (403)
T ss_dssp H-H----TCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH------------HHHHHHHHHHTCSCHHHHHHHHGGGGC
T ss_pred H-H----hCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHH------------HHHHHHHHHHCCCCHHHHHHHHHHhcc
Confidence 5 5 9995 477778888877776 55666666653 4564 8999999999999999999999
Q ss_pred hHHHHHhhhccccccccccHHHHhhhhcchhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy1352 334 EYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQ 398 (399)
Q Consensus 334 e~i~~li~~n~~~i~Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~e~d~~lf~~~~~~~~~~~~ 398 (399)
+++++++++|+++|+|+|+|+|++++++|||++|+++|+||||+||||||++||+|+++|+++++
T Consensus 320 e~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~ 384 (403)
T 3fga_B 320 EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKL 384 (403)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865
No 5
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1.1e-36 Score=312.44 Aligned_cols=181 Identities=39% Similarity=0.721 Sum_probs=158.5
Q ss_pred HHHHHHHHhcc----------ChhhH-HhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHH
Q psy1352 190 LGEIEEILDVI----------EPTQF-INIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPA 258 (399)
Q Consensus 190 L~ELeeILe~i----------~~~eF-~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~ 258 (399)
+.|+.||++++ ++..| .+++.|||+ ++|++.+|.|+++ ++++++++++....+++-+.
T Consensus 221 IaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk--~~~l~~y~~qL~y---------cv~qf~eKDp~L~~~vi~~L 289 (449)
T 2npp_B 221 IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHK--VKSLSVYHPQLAY---------CVVQFLEKDSTLTEPVVMAL 289 (449)
T ss_dssp HHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGG--SSCGGGTHHHHHH---------HHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHc--cchhHHhHHHHHH---------HHHHHHhcCcHhHHHHHHHH
Confidence 46888888765 12344 789999999 9999999999998 78899999999998877775
Q ss_pred HHHhhhcCCcH---HHHHHHHHHHHHHHH-hcHHHHHHHHHHHHhhhhCCCCccccc-ccccCCCchhHhhhHhhhccch
Q psy1352 259 LYRISKEHWNQ---TIVALVYNVLKTFME-MNSRLFDELTANYKAERQNSPFGHAFS-TSLAMPRDELAVAERALYFWNN 333 (399)
Q Consensus 259 L~~~s~~HWn~---tV~~la~nvLk~l~e-~d~~lF~~~~~~~~~~~~~~~~~~~~~-~~~ci~s~hfQVAEraL~~wnN 333 (399)
| + |||. ..+.+..+.+..+++ ++|.-|.++.. +.|+ +++|++|+|||||||||++|||
T Consensus 290 L-k----~WP~tns~KevlFL~eleeile~~~~~ef~~i~~------------~lF~~la~ci~S~hfqVAErAL~~w~N 352 (449)
T 2npp_B 290 L-K----YWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME------------PLFRQLAKCVSSPHFQVAERALYYWNN 352 (449)
T ss_dssp H-H----TCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH------------HHHHHHHHHHTCSCHHHHHHHHGGGGC
T ss_pred H-H----hCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHH------------HHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 4 5 9995 477788888888777 66667766653 4565 8999999999999999999999
Q ss_pred hHHHHHhhhccccccccccHHHHhhhhcchhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy1352 334 EYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQ 398 (399)
Q Consensus 334 e~i~~li~~n~~~i~Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~e~d~~lf~~~~~~~~~~~~ 398 (399)
++|++++++|+++|+|+++|+|++++++|||++|+++|+||+|+||||||++|++|+++|+++++
T Consensus 353 ~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~ 417 (449)
T 2npp_B 353 EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKL 417 (449)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998754
No 6
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=99.88 E-value=9.3e-25 Score=220.55 Aligned_cols=144 Identities=35% Similarity=0.641 Sum_probs=114.2
Q ss_pred HHHHHHHHhcc----------ChhhH-HhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHH
Q psy1352 190 LGEIEEILDVI----------EPTQF-INIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPA 258 (399)
Q Consensus 190 L~ELeeILe~i----------~~~eF-~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~ 258 (399)
+.|+.||++++ ++..| .+++.|||+ ++|++.+|.|+++ ++++++++++....+++-+.
T Consensus 233 IaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk--~~~l~~y~~qL~y---------cv~qf~eKDp~L~~~vi~~L 301 (392)
T 2jak_A 233 IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHK--VKSLSVYHPQLAY---------CVVQFLEKDSTLTEPVVMAL 301 (392)
T ss_dssp HHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGT--SGGGGGTHHHHHH---------HHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhcc--CCcHHHhHHHHHH---------HHHHHHhcCchhHHHHHHHH
Confidence 46888888755 23344 789999999 9999999999998 78899999999998877775
Q ss_pred HHHhhhcCCcHH---HHHHHHHHHHHHHH-hcHHHHHHHHHHHHhhhhCCCCccccc-ccccCCCchhHhhhHhhhccch
Q psy1352 259 LYRISKEHWNQT---IVALVYNVLKTFME-MNSRLFDELTANYKAERQNSPFGHAFS-TSLAMPRDELAVAERALYFWNN 333 (399)
Q Consensus 259 L~~~s~~HWn~t---V~~la~nvLk~l~e-~d~~lF~~~~~~~~~~~~~~~~~~~~~-~~~ci~s~hfQVAEraL~~wnN 333 (399)
| + |||.+ .+.+..+.+..+++ +++.-|.++. .+.|+ +++|++|+|||||||||++|||
T Consensus 302 L-k----~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~------------~~lF~~la~ci~S~hfqVAErAL~~wnN 364 (392)
T 2jak_A 302 L-K----YWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM------------EPLFRQLAKCVSSPHFQVAERALYYWNN 364 (392)
T ss_dssp H-H----SSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHH------------HHHHHHHHHHHTCSSHHHHHHHHGGGGC
T ss_pred H-H----hCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH------------HHHHHHHHHHHcCCcHHHHHHHHHHhCc
Confidence 4 5 99964 67777888877777 5566666665 34565 8999999999999999999999
Q ss_pred hHHHHHhhhccccccccccHHHHhhhhc
Q psy1352 334 EYIMSLMEENNHVVMPIMFPALYRISKE 361 (399)
Q Consensus 334 e~i~~li~~n~~~i~Pii~~~L~~~s~~ 361 (399)
|++++++++|+++|+|+|||+||+++++
T Consensus 365 e~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 365 EYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 9999999999999999999999999974
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.20 E-value=0.63 Score=45.03 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC------CCChHHHHHHhhccCCCC--CchhHhHHHHHHH
Q psy1352 123 PLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKD------PTLTEPVVKGLLKYWPRT--CSQKEVMFLGEIE 194 (399)
Q Consensus 123 PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kd------p~L~~~vi~~LLk~WP~t--ns~KEvlFL~ELe 194 (399)
.+.++.+..++..|+++.....-.. .++..|+..+...+ |.+.+.++..+- .. +......-+.-+.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIG 155 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHHHHHHHHHH
Confidence 3667888889999999888766544 78999988876543 444444444432 22 3344445666677
Q ss_pred HHHhccChhhHHhhHHHHHHHhhhhhCCC--cHHHHHHHHHhhcchhhHHHhhhccc--cchhcchHHHHHhhhcCCcHH
Q psy1352 195 EILDVIEPTQFINIQEPLFRQIAKCVSSP--HFQVAERALYFWNNEYIMSLMEENNH--VVMPIMFPALYRISKEHWNQT 270 (399)
Q Consensus 195 eILe~i~~~eF~kv~~pLfk~lakCi~S~--HfQVAErAL~~w~Ne~i~~lI~~n~~--~i~PiI~~~L~~~s~~HWn~t 270 (399)
.+.+...++.+.....+++..+.+++.+. +..|-..|+..+.+ ++.++..+.. ...+.+.+.|.+..... +..
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~ 232 (462)
T 1ibr_B 156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN--SLEFTKANFDKESERHFIMQVVCEATQCP-DTR 232 (462)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH--HTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHH
T ss_pred HHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHH
Confidence 77776656666677778888888999888 78887777765543 1222222111 01122344444333322 346
Q ss_pred HHHHHHHHHHHHHHhcH
Q psy1352 271 IVALVYNVLKTFMEMNS 287 (399)
Q Consensus 271 V~~la~nvLk~l~e~d~ 287 (399)
++..+..++..+.+..+
T Consensus 233 vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777665444
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.91 E-value=0.79 Score=49.23 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=116.3
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC-----CCChHHHHHHhhccCCCCCchhHhH
Q psy1352 114 GSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKD-----PTLTEPVVKGLLKYWPRTCSQKEVM 188 (399)
Q Consensus 114 gsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kd-----p~L~~~vi~~LLk~WP~tns~KEvl 188 (399)
...++..-.++.++.+..++..++++...+. ..--.++..|+......| |.+.+.++..+ -..+..-.-.
T Consensus 73 kn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~ 147 (852)
T 4fdd_A 73 KNNVKAHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEG 147 (852)
T ss_dssp HHHTTTSGGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHH
Confidence 3444433345778899999999999877554 345778999999888765 34444443333 2233333334
Q ss_pred HHHHHHHHHhccChh----hHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHHHHHhhh
Q psy1352 189 FLGEIEEILDVIEPT----QFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISK 264 (399)
Q Consensus 189 FL~ELeeILe~i~~~----eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~L~~~s~ 264 (399)
-+.-+..+++..++. ........+...+.+++.+++..|-..|+....+ ++....+.-...++.+++.|.+...
T Consensus 148 al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (852)
T 4fdd_A 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAG 225 (852)
T ss_dssp HHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcC
Confidence 455555666555432 1112245556666778889999998888776542 2211111111223445555655443
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccch
Q psy1352 265 EHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNN 333 (399)
Q Consensus 265 ~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnN 333 (399)
.- +..||..+..++..+.+..++.+....+..- .-.-.++.+..-.|+..|+.+|.+
T Consensus 226 d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~-----------~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 226 DE-EPEVRKNVCRALVMLLEVRMDRLLPHMHNIV-----------EYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHH-----------HHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH-----------HHHHHHccCCcHHHHHHHHHHHHH
Confidence 32 4578999999999988877755433221100 001123344556788888888864
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.51 E-value=2.8 Score=44.13 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=111.8
Q ss_pred ChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC-CC-ChHHHHHHhhccCCCC-CchhHhHHHHHHHHHHhcc
Q psy1352 124 LKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKD-PT-LTEPVVKGLLKYWPRT-CSQKEVMFLGEIEEILDVI 200 (399)
Q Consensus 124 LkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kd-p~-L~~~vi~~LLk~WP~t-ns~KEvlFL~ELeeILe~i 200 (399)
+.++.+..++..|+.......-.. -.++..++......+ |. --+.++..|+..--.. +..-....+.-+..+++.+
T Consensus 88 l~~~~~~~ik~~ll~~l~~~~~~v-r~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 88 VSPEAKNQIKTNALTALVSIEPRI-ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHCCCchHH-HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 457788888888888877765333 778888888776654 31 1223333333222222 3333334455666666665
Q ss_pred Chhh--HHhhHHHHHHHhhhhhCCC--cHHHHHHHHHhhcchhhHHHhhhccc--cchhcchHHHHHhhhcCCcHHHHHH
Q psy1352 201 EPTQ--FINIQEPLFRQIAKCVSSP--HFQVAERALYFWNNEYIMSLMEENNH--VVMPIMFPALYRISKEHWNQTIVAL 274 (399)
Q Consensus 201 ~~~e--F~kv~~pLfk~lakCi~S~--HfQVAErAL~~w~Ne~i~~lI~~n~~--~i~PiI~~~L~~~s~~HWn~tV~~l 274 (399)
.++. +.....+++..+..++.++ +..|-..|+..+.+ ++.++..+.. ...+.+.+.|.+.. .+-+..++..
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~ 243 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD--SLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAA 243 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH--HGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--HHHHHHHHccChhHHHHHHHHHHHHh-cCCCHHHHHH
Confidence 5442 4566677777778888887 88888888776543 2222222110 00123344443322 3456678888
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCccccc-ccccCCCchhHhhhHhhhccch
Q psy1352 275 VYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFS-TSLAMPRDELAVAERALYFWNN 333 (399)
Q Consensus 275 a~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~-~~~ci~s~hfQVAEraL~~wnN 333 (399)
+..++..+.+..++.+...... .... ...++.+.+..|+..|+.+|.+
T Consensus 244 a~~~l~~l~~~~~~~~~~~l~~-----------~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 244 AFGCLCKIMSKYYTFMKPYMEQ-----------ALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHH-----------THHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8888888877665444332220 0111 2224556678999999999963
No 10
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=80.56 E-value=28 Score=31.86 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=100.0
Q ss_pred CccCHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC-CC----ChHHHHHHhh
Q psy1352 102 HFNGVGELLEILGSIINGFA-LPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKD-PT----LTEPVVKGLL 175 (399)
Q Consensus 102 ~~~GI~ELLeilgsIInGfa-~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kd-p~----L~~~vi~~LL 175 (399)
+..-+...+..+|.+.+|+. ......|..-+.-.++..++.+.-. =-....+++..+++.- |. -.+.++..|+
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~-V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPS-VIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 33456778999999999987 5553255555666777777776633 3567889999999854 22 2346777777
Q ss_pred ccCCCCCchhHhHHHHHHHHHHhccCh--hhHHhhH-HHHHHHhhhhhCCCcHHHHHHHHHhhc
Q psy1352 176 KYWPRTCSQKEVMFLGEIEEILDVIEP--TQFINIQ-EPLFRQIAKCVSSPHFQVAERALYFWN 236 (399)
Q Consensus 176 k~WP~tns~KEvlFL~ELeeILe~i~~--~eF~kv~-~pLfk~lakCi~S~HfQVAErAL~~w~ 236 (399)
..+-..+++=....+.-|..++...+. +.|.+.+ .++...+.+|+......|-+.|...+.
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 777666777777888888888887653 7788888 889999999999999999988877555
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.53 E-value=8 Score=40.71 Aligned_cols=157 Identities=12% Similarity=0.113 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHc------CCCChHHHHHHhhccCCCC--CchhHhHHHHHHHH
Q psy1352 124 LKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEK------DPTLTEPVVKGLLKYWPRT--CSQKEVMFLGEIEE 195 (399)
Q Consensus 124 LkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~K------dp~L~~~vi~~LLk~WP~t--ns~KEvlFL~ELee 195 (399)
+.++.+..++..++.......-.. .++..|+..+... .|.+.+.++..+- .. +..-...-+.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~--~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~----~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS--CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHH
Confidence 557778888888888776655443 6777777766543 3444444444332 12 33333456677777
Q ss_pred HHhccChhhHHhhHHHHHHHhhhhhCCC--cHHHHHHHHHhhcchhhHHHhhhccc--cchhcchHHHHHhhhcCCcHHH
Q psy1352 196 ILDVIEPTQFINIQEPLFRQIAKCVSSP--HFQVAERALYFWNNEYIMSLMEENNH--VVMPIMFPALYRISKEHWNQTI 271 (399)
Q Consensus 196 ILe~i~~~eF~kv~~pLfk~lakCi~S~--HfQVAErAL~~w~Ne~i~~lI~~n~~--~i~PiI~~~L~~~s~~HWn~tV 271 (399)
+++.+.++.+......+...+.+++.++ +..|-..|+..+.+ ++..+..+.. ...+.+.+.+.+..... +..+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~v 233 (876)
T 1qgr_A 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN--SLEFTKANFDKESERHFIMQVVCEATQCP-DTRV 233 (876)
T ss_dssp HHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHH--HGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHH
T ss_pred HHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHH
Confidence 7777777777777788888888888887 67877777765543 2222222111 00012333333333222 3468
Q ss_pred HHHHHHHHHHHHHhcHHH
Q psy1352 272 VALVYNVLKTFMEMNSRL 289 (399)
Q Consensus 272 ~~la~nvLk~l~e~d~~l 289 (399)
+..+..++..+.+..++.
T Consensus 234 r~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 234 RVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 888888888877755533
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=77.41 E-value=19 Score=33.05 Aligned_cols=157 Identities=11% Similarity=0.191 Sum_probs=91.0
Q ss_pred hHHHHHHHH-HHhcc---C--hhhHHhhHHHHHHHhhhhh-CCCcHHHHHHHHHhhcchhhHHHhh------hccccchh
Q psy1352 187 VMFLGEIEE-ILDVI---E--PTQFINIQEPLFRQIAKCV-SSPHFQVAERALYFWNNEYIMSLME------ENNHVVMP 253 (399)
Q Consensus 187 vlFL~ELee-ILe~i---~--~~eF~kv~~pLfk~lakCi-~S~HfQVAErAL~~w~Ne~i~~lI~------~n~~~i~P 253 (399)
..-+.+|.. +++.. . ..++. .+...+.+++ ...|.+|.+.|+..... +.+-+. .+...++|
T Consensus 34 k~al~~L~~~~~~~~~~i~~~~~~~~----~~~~~L~~~l~~D~n~~v~~~A~~al~~--la~~l~~~~f~~~y~~~llp 107 (249)
T 2qk1_A 34 VEALEEFWDSVLSQTKKLKSTSQNYS----NLLGIYGHIIQKDANIQAVALAAQSVEL--ICDKLKTPGFSKDYVSLVFT 107 (249)
T ss_dssp HHHHHHHHHHTGGGCCCBCCTTCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHH--HHHHHCTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccCcccHH----HHHHHHHHHhccCCCHHHHHHHHHHHHH--HHHhcccccccHHHHHHHHH
Confidence 445677777 77542 1 23343 3455556677 68899999998887653 333332 34445556
Q ss_pred cchHHHHHhhhcCCcHHHHHHHHHHHHHHHH-hc-----H---HHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhh
Q psy1352 254 IMFPALYRISKEHWNQTIVALVYNVLKTFME-MN-----S---RLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVA 324 (399)
Q Consensus 254 iI~~~L~~~s~~HWn~tV~~la~nvLk~l~e-~d-----~---~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVA 324 (399)
.++..+-. . ..+|+..+..++..+++ ++ + .+.+.+.. ++.+...||-
T Consensus 108 ~ll~~l~d---k--k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~-------------------~l~~k~~~vk 163 (249)
T 2qk1_A 108 PLLDRTKE---K--KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE-------------------HMKHKTPQIR 163 (249)
T ss_dssp HHHHGGGC---C--CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH-------------------HTTCSSHHHH
T ss_pred HHHHHHcC---C--CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHH-------------------HHcCCChHHH
Confidence 55554422 2 36899999999999987 43 2 34444433 3344456777
Q ss_pred hHhhhccchhHHHHHhhhccc------ccc-ccccHHHHhhhhcchhHHHHHHHHHHHHHHH
Q psy1352 325 ERALYFWNNEYIMSLMEENNH------VVM-PIMFPALYRISKEHWNQTIVALVYNVLKTFM 379 (399)
Q Consensus 325 EraL~~wnNe~i~~li~~n~~------~i~-Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~ 379 (399)
+.++.+- .+++..... .-+ |.+.|.|.+... +=++.|+.-|..++-.++
T Consensus 164 ~~al~~l-----~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 164 MECTQLF-----NASMKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHH-----HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 7776432 233322221 124 666666655442 227779988888887555
No 13
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=76.16 E-value=53 Score=31.00 Aligned_cols=177 Identities=10% Similarity=0.115 Sum_probs=103.9
Q ss_pred CchhHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccc----hhcchH
Q psy1352 182 CSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVV----MPIMFP 257 (399)
Q Consensus 182 ns~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i----~PiI~~ 257 (399)
+....+--++.|.+.++. ++++....+.-+|+-++--+.+.|++|+.++|.+.. .++..+.+....+ ...+.|
T Consensus 59 d~k~~~~ale~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp CHHHHHHHHHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHH
Confidence 334455566777776665 345555565667775554445779999999999988 3555444321111 245556
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHhcH-H-HHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccchhH
Q psy1352 258 ALYRISKEHWNQTIVALVYNVLKTFMEMNS-R-LFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEY 335 (399)
Q Consensus 258 ~L~~~s~~HWn~tV~~la~nvLk~l~e~d~-~-lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnNe~ 335 (399)
.|..-. ++=..+||..+..+++.+.++-| . +|+.+.+ ++.|.+..+-|..| +-
T Consensus 136 ~LveKl-Gd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~-------------------g~ksKN~R~R~e~l-----~~ 190 (266)
T 2of3_A 136 YLLLKT-GEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD-------------------ALKSKNARQRSECL-----LV 190 (266)
T ss_dssp HHHHGG-GCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-------------------GGGCSCHHHHHHHH-----HH
T ss_pred HHHHHh-CCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-------------------HHccCCHHHHHHHH-----HH
Confidence 554422 45678999999999999988543 2 5555554 33344455444444 23
Q ss_pred HHHHhhhcccccccccc---HHHHhhhhcchhHHHHHHHHHHHH-HHHhhCHHHHHH
Q psy1352 336 IMSLMEENNHVVMPIMF---PALYRISKEHWNQTIVALVYNVLK-TFMEMNSRLFDE 388 (399)
Q Consensus 336 i~~li~~n~~~i~Pii~---~~L~~~s~~HWn~~i~~l~~~vlk-~~~e~d~~lf~~ 388 (399)
+.+++..+.-. ....+ |.+.+.-. -=|..|++-|.|++. ++...=..+|..
T Consensus 191 l~~li~~~G~~-~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 191 IEYYITNAGIS-PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHHHHCSG-GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHhcCCC-ccccccchHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555544332 22333 44433222 237889999999988 454444555543
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=74.63 E-value=34 Score=38.07 Aligned_cols=100 Identities=14% Similarity=0.231 Sum_probs=65.7
Q ss_pred hhHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhh-------ccccchhcch
Q psy1352 184 QKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEE-------NNHVVMPIMF 256 (399)
Q Consensus 184 ~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~-------n~~~i~PiI~ 256 (399)
.-..--+..+..+++..+++.|.....++...+.+++...+..|+..|+..+.. ++..+.. .-...++.++
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~--l~~~~~~~~~~~~~~~~~~~~~ll 569 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ--LVKVIRPLDQPSSFDATPYIKDLF 569 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHHCCSSSCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH--HHHHhcCcccccccchHHHHHHHH
Confidence 444556777778887788887777777777777788899999998777766652 3433332 1112234455
Q ss_pred HHHHHhhh-cCCcHHHHHHHHHHHHHHHHh
Q psy1352 257 PALYRISK-EHWNQTIVALVYNVLKTFMEM 285 (399)
Q Consensus 257 ~~L~~~s~-~HWn~tV~~la~nvLk~l~e~ 285 (399)
|.+....+ ...+..+|..+..++..+.+.
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 55444332 357788999888888888664
No 15
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=69.73 E-value=10 Score=32.31 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHHcCCCChHHHHHHhhccCCCC--CchhHhHHHHHHHHHHhccC----h---hhHHhhHHHHHHHhhhhhCCCcHHH
Q psy1352 157 VQFLEKDPTLTEPVVKGLLKYWPRT--CSQKEVMFLGEIEEILDVIE----P---TQFINIQEPLFRQIAKCVSSPHFQV 227 (399)
Q Consensus 157 ~~fl~Kdp~L~~~vi~~LLk~WP~t--ns~KEvlFL~ELeeILe~i~----~---~eF~kv~~pLfk~lakCi~S~HfQV 227 (399)
.+++-.+..-++.++..+.++-=.. ++.|.+-+|.-+.+|+...- + ..|.+++.++|..+....++.+.+-
T Consensus 26 s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~k 105 (142)
T 2km4_A 26 SKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKK 105 (142)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444445555555555555554443 77999999999999996331 2 3688999999999988878889999
Q ss_pred HHHHHHhhcchhh
Q psy1352 228 AERALYFWNNEYI 240 (399)
Q Consensus 228 AErAL~~w~Ne~i 240 (399)
..|-+.+|....+
T Consensus 106 v~rvl~iWeer~v 118 (142)
T 2km4_A 106 LSRVVNILKERNI 118 (142)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHhhccCC
Confidence 9999999976543
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=69.25 E-value=1.1e+02 Score=31.78 Aligned_cols=150 Identities=12% Similarity=0.113 Sum_probs=73.5
Q ss_pred HHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCc--HHHHHHHHHhhcchhhHHHhhhccccchhcchHHHHHhhhcCC
Q psy1352 190 LGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPH--FQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHW 267 (399)
Q Consensus 190 L~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~H--fQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~L~~~s~~HW 267 (399)
+.-+..+...++++.+...+.++...+.+.+.+.+ ..|-+.|+..+.+ +.......-...++.++|.|.+....+=
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 34444455555545666677777777777777664 2456666665543 2222222222233444455544443332
Q ss_pred cHHHHHHHHHHHHHHHHhc--------HHHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccchhHHHHH
Q psy1352 268 NQTIVALVYNVLKTFMEMN--------SRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSL 339 (399)
Q Consensus 268 n~tV~~la~nvLk~l~e~d--------~~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnNe~i~~l 339 (399)
+..++..+..++..+...- ++++..+.+.... ...+..|-+.++..+. .+...
T Consensus 663 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-----------------~~~~~~~~~~~~~~l~--~i~~~ 723 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-----------------ENVHRSVKPQILSVFG--DIALA 723 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC-----------------TTSCGGGHHHHHHHHH--HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC-----------------ccccHHhhHHHHHHHH--HHHHH
Confidence 4567877777776665421 1122222211100 0123445455555543 34444
Q ss_pred hhhccccccccccHHHHhhhh
Q psy1352 340 MEENNHVVMPIMFPALYRISK 360 (399)
Q Consensus 340 i~~n~~~i~Pii~~~L~~~s~ 360 (399)
+.++-...+|.++|.|.+...
T Consensus 724 ~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 724 IGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HGGGGGGGHHHHHHHHHHHHT
T ss_pred hchhHHHHHHHHHHHHHHHHh
Confidence 455555567888888776543
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=66.87 E-value=1.2e+02 Score=32.12 Aligned_cols=203 Identities=7% Similarity=0.082 Sum_probs=114.3
Q ss_pred HHHHhhccCCCCCchhHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccc
Q psy1352 170 VVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNH 249 (399)
Q Consensus 170 vi~~LLk~WP~tns~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~ 249 (399)
++..++..+.-.++.=......-+.++...++ ++|.+.+..+...+.+.++...+.|...|..... .+...+..+-.
T Consensus 630 ~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg--~i~~~~~~~~~ 706 (852)
T 4fdd_A 630 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIG--EISIQMGIEMQ 706 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHH--HHHHHHGGGGG
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHH--HHHHHhhHhHH
Confidence 45555555654444444456667777776664 5777777777777888888888888666655433 23333333333
Q ss_pred cchhcchHHHHHhhh-cCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCccccc-ccccCCCchhHhhhHh
Q psy1352 250 VVMPIMFPALYRISK-EHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFS-TSLAMPRDELAVAERA 327 (399)
Q Consensus 250 ~i~PiI~~~L~~~s~-~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~-~~~ci~s~hfQVAEra 327 (399)
..++.+++.|.+..+ ..-+.+++..+..++--+....|+....-+.++- ....+ .. -+.+ ....+.|
T Consensus 707 p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~--------~~~~~~l~-~~~d--~~e~~~a 775 (852)
T 4fdd_A 707 PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFI--------RPWCTSLR-NIRD--NEEKDSA 775 (852)
T ss_dssp GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHH--------HHHHHHHH-TSCS--SHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHH--------HHHHHHhc-cccc--cHHHHHH
Confidence 333444455444332 2456788888888887777777654322111110 00011 10 0111 1111122
Q ss_pred hhccchhHHHHHhhhccccccccccHHHHhhhhcchh---HHHHHHHHHHHHHHHhhCH-HHHHHHHHHH
Q psy1352 328 LYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWN---QTIVALVYNVLKTFMEMNS-RLFDELTANY 393 (399)
Q Consensus 328 L~~wnNe~i~~li~~n~~~i~Pii~~~L~~~s~~HWn---~~i~~l~~~vlk~~~e~d~-~lf~~~~~~~ 393 (399)
+ ..+..++..|.+.++|.+..-.. +-..|+ +..+..-.++|..|.++-| +.|+.+..++
T Consensus 776 ~-----~~l~~li~~~p~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 838 (852)
T 4fdd_A 776 F-----RGICTMISVNPSGVIQDFIFFCD--AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQF 838 (852)
T ss_dssp H-----HHHHHHHHHCGGGTGGGHHHHHH--HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred H-----HHHHHHHHhChHhHHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhC
Confidence 2 45667888898888876552222 222354 5688888888888888876 4687776543
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=66.21 E-value=69 Score=35.60 Aligned_cols=215 Identities=7% Similarity=0.121 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCCChHHH----HHHhhccCCCCCchhHhHHHHHHHHHHhccCh------------------hhHHhhH
Q psy1352 152 LAYCVVQFLEKDPTLTEPV----VKGLLKYWPRTCSQKEVMFLGEIEEILDVIEP------------------TQFINIQ 209 (399)
Q Consensus 152 L~~cv~~fl~Kdp~L~~~v----i~~LLk~WP~tns~KEvlFL~ELeeILe~i~~------------------~eF~kv~ 209 (399)
-..|+..+....|....++ +..++++|.-.+..-...-+.-+..++..+.. ..+...+
T Consensus 353 A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV 432 (1230)
T ss_dssp HHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh
Confidence 3445555555455433332 44566676544443333444445555544321 2345566
Q ss_pred HHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccccchhcchHHHHHhhhcC-CcHHHHHHHHHHHHHHHH-hcH
Q psy1352 210 EPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEH-WNQTIVALVYNVLKTFME-MNS 287 (399)
Q Consensus 210 ~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~~L~~~s~~H-Wn~tV~~la~nvLk~l~e-~d~ 287 (399)
..+...+.+++.+.+..+-+.++..... ++......-...++.++|.+.+..+.. |...++.-+...+..+.+ ..+
T Consensus 433 ~~ll~~l~~~l~~~~~~vr~~~~~~L~~--l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~ 510 (1230)
T 1u6g_C 433 PNIVKALHKQMKEKSVKTRQCCFNMLTE--LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 510 (1230)
T ss_dssp THHHHHHHHHTTCSCHHHHHHHHHHHHH--HHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHH--HHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH
Confidence 6677777788889998887776665542 222211111122345555555554444 445677666666666544 333
Q ss_pred HHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccchhHHHHHhhh-------ccccccccccHHHHhhhh
Q psy1352 288 RLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSLMEE-------NNHVVMPIMFPALYRISK 360 (399)
Q Consensus 288 ~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnNe~i~~li~~-------n~~~i~Pii~~~L~~~s~ 360 (399)
+.|....+. ..-.+..++.+.+..|+..|+..+. .+++.+.. .-...++.++|.+.....
T Consensus 511 ~~~~~~l~~-----------llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 577 (1230)
T 1u6g_C 511 QVFHPHVQA-----------LVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577 (1230)
T ss_dssp GGGHHHHTT-----------THHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhHHHH-----------HHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHHHHHHHHHh
Confidence 222221110 0001122344455667666654443 23333222 111122344444433322
Q ss_pred -cchhHHHHHHHHHHHHHHHhh
Q psy1352 361 -EHWNQTIVALVYNVLKTFMEM 381 (399)
Q Consensus 361 -~HWn~~i~~l~~~vlk~~~e~ 381 (399)
...+..++.-+..++..+.+.
T Consensus 578 ~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 578 AADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHH
Confidence 356777887777777765543
No 19
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=65.11 E-value=8.6 Score=32.01 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhcc---Ch---hhHHhhHHHHHHHhhhhhCCCcH
Q psy1352 152 LAYCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVI---EP---TQFINIQEPLFRQIAKCVSSPHF 225 (399)
Q Consensus 152 L~~cv~~fl~Kdp~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~i---~~---~eF~kv~~pLfk~lakCi~S~Hf 225 (399)
-..=+.+++-.+..-+..++..+.++--.+.+.+.+.+|.-+.+|+-.. .+ ..|.+++.++|..+.+..+..+.
T Consensus 22 sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k 101 (135)
T 4fu3_A 22 SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCK 101 (135)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3444556666666677777777777777778889999999999998543 12 35788999999988888888888
Q ss_pred HHHHHHHHhhcc
Q psy1352 226 QVAERALYFWNN 237 (399)
Q Consensus 226 QVAErAL~~w~N 237 (399)
+-..+.+.+|..
T Consensus 102 ~kl~kll~iW~~ 113 (135)
T 4fu3_A 102 KPLERLLNIWQE 113 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 888889999985
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.41 E-value=98 Score=29.27 Aligned_cols=146 Identities=13% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHh------hh------------ccc---cchhcchHHHHHhhhc----
Q psy1352 211 PLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLM------EE------------NNH---VVMPIMFPALYRISKE---- 265 (399)
Q Consensus 211 pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI------~~------------n~~---~i~PiI~~~L~~~s~~---- 265 (399)
.++..+..++.+....|...|+.+|.+= .... .+ ... ..++.++|.+.+....
T Consensus 259 ~l~~~~~~~~~~~~~~v~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d 336 (462)
T 1ibr_B 259 ALFAITIEAMKSDIDEVALQGIEFWSNV--CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336 (462)
T ss_dssp THHHHHHHHHHCSSHHHHHHHHHHHHHH--HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHH--HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccc
Confidence 4555556677788889999999998752 2211 00 000 0125555655544322
Q ss_pred ----CCcHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccchhHHHHHh
Q psy1352 266 ----HWNQTIVALVYNVLKTFMEMNS-RLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSLM 340 (399)
Q Consensus 266 ----HWn~tV~~la~nvLk~l~e~d~-~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnNe~i~~li 340 (399)
-|+ +|..+..++..+.+.-+ .+...+... ....+++++.++-+.|+.... .+.
T Consensus 337 ~~~~~~~--~r~~a~~~L~~l~~~~~~~~~~~~~~~---------------l~~~l~~~~~~~r~aal~~l~-----~l~ 394 (462)
T 1ibr_B 337 DDDDDWN--PCKAAGVCLMLLATCCEDDIVPHVLPF---------------IKEHIKNPDWRYRDAAVMAFG-----CIL 394 (462)
T ss_dssp CCTTCCS--HHHHHHHHHHHHHHHTTTTHHHHHHHH---------------HHHHTTCSSHHHHHHHHHHHH-----HTS
T ss_pred cccccch--HHHHHHHHHHHHHHhccHHHHHHHHHH---------------HHHHhcCCChHHHHHHHHHHH-----HHh
Confidence 364 57777777777765432 122222221 112334556666666665432 122
Q ss_pred hhc----cccccccccHHHHhhhhcchhHHHHHHHHHHHHHHHhh
Q psy1352 341 EEN----NHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEM 381 (399)
Q Consensus 341 ~~n----~~~i~Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~e~ 381 (399)
... -...+|.++|.+.+..... +..|+.-|..++.-+.+.
T Consensus 395 ~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 395 EGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp SSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 111 1233455666665544322 356888888888866654
No 21
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=63.26 E-value=79 Score=27.84 Aligned_cols=131 Identities=15% Similarity=0.058 Sum_probs=90.7
Q ss_pred CccCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCCCChHHHHHHhhccCCCC
Q psy1352 102 HFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWPRT 181 (399)
Q Consensus 102 ~~~GI~ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP~t 181 (399)
+..-....+..+|.+.++....+. .|..-+...|+...+.+.-. -......++..+++.-+ ...++..++...-..
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~~-~~~~~ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~ 145 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRFS-NYASACVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNK 145 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCC
Confidence 334456778888888887655443 34444566666666665533 25667777787777543 356666676666656
Q ss_pred CchhHhHHHHHHHHHHhccChhh-HHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhc
Q psy1352 182 CSQKEVMFLGEIEEILDVIEPTQ-FINIQEPLFRQIAKCVSSPHFQVAERALYFWN 236 (399)
Q Consensus 182 ns~KEvlFL~ELeeILe~i~~~e-F~kv~~pLfk~lakCi~S~HfQVAErAL~~w~ 236 (399)
|+.=...-++-|..++...+|+. +...+..+...+..|+...+..|-..|.....
T Consensus 146 ~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 146 NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 77767778888888888877663 56677788888889999999988888766443
No 22
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=61.10 E-value=16 Score=31.27 Aligned_cols=90 Identities=9% Similarity=0.120 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhccCh---hhHHhhHHHHHHHhhhhhCCCcH
Q psy1352 149 HAQLAYCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEP---TQFINIQEPLFRQIAKCVSSPHF 225 (399)
Q Consensus 149 ~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~i~~---~eF~kv~~pLfk~lakCi~S~Hf 225 (399)
.++...-++.++..+..-+..++.-+.++--++.+.+.+.+|.-+..|+-...+ ..|.+.+.++|.....+++...-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 556666778888888888888888888888889999999999999999987754 36889999999988877766666
Q ss_pred HHHHHHHHhhcch
Q psy1352 226 QVAERALYFWNNE 238 (399)
Q Consensus 226 QVAErAL~~w~Ne 238 (399)
+-..+-+..|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6666777788754
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=59.49 E-value=93 Score=27.38 Aligned_cols=168 Identities=11% Similarity=0.115 Sum_probs=89.0
Q ss_pred CchhHhHHHHHHHHHHhccC---hhhHHhhHHHHHHHhhhhhC-CCcHHHHHHHHHhhcchhhHHHhhhccccchhcchH
Q psy1352 182 CSQKEVMFLGEIEEILDVIE---PTQFINIQEPLFRQIAKCVS-SPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFP 257 (399)
Q Consensus 182 ns~KEvlFL~ELeeILe~i~---~~eF~kv~~pLfk~lakCi~-S~HfQVAErAL~~w~Ne~i~~lI~~n~~~i~PiI~~ 257 (399)
+-.....-+..|..+++..+ ...+. .+...+.+.+. ..|.+|...|+..... +..-+...-....+.++|
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~----~i~~~L~~~l~kd~~~~V~~~a~~~l~~--la~~l~~~~~~~~~~ilp 101 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYG----ALVSALKKVITKDSNVVLVAMAGKCLAL--LAKGLAKRFSNYASACVP 101 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHH--HHHHHGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHH----HHHHHHHHHhccCCCHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHH
Confidence 33444566777888876532 22333 34444556664 7899998888876652 333333322234455566
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccchhHHH
Q psy1352 258 ALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIM 337 (399)
Q Consensus 258 ~L~~~s~~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnNe~i~ 337 (399)
.|.+.... =+..||..+..++..+++..+ ++.+.... ...+.+.+.+|-+.++.+- -
T Consensus 102 ~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l---------------~~~l~~~~~~vr~~~l~~l-----~ 158 (242)
T 2qk2_A 102 SLLEKFKE-KKPNVVTALREAIDAIYASTS--LEAQQESI---------------VESLSNKNPSVKSETALFI-----A 158 (242)
T ss_dssp HHHHGGGC-CCHHHHHHHHHHHHHHHTTSC--HHHHHHHH---------------HHHTTCSCHHHHHHHHHHH-----H
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHcCC--HHHHHHHH---------------HHHHcCCChHHHHHHHHHH-----H
Confidence 66554333 256899999999999877443 33333321 1123344456666555322 1
Q ss_pred HHhhhc-----cccccccccHHHHhhhhcchhHHHHHHHHHHHHHHH
Q psy1352 338 SLMEEN-----NHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFM 379 (399)
Q Consensus 338 ~li~~n-----~~~i~Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~ 379 (399)
.++... ...-+|.+.|.|..... +=+..|+.-|..++..++
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLN-EPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Confidence 222111 11223444555544332 114467777777776443
No 24
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=57.12 E-value=1.8e+02 Score=30.08 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=62.2
Q ss_pred hHhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhc--cccchhcchHHHHHh
Q psy1352 185 KEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEEN--NHVVMPIMFPALYRI 262 (399)
Q Consensus 185 KEvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n--~~~i~PiI~~~L~~~ 262 (399)
....-+.-+..+.+...++.+...+.++...+.+++.++|..|.++|+..+.+ +...+..+ ....++.++|.|.+.
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGR--IADSVAESIDPQQHLPGVVQACLIG 462 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH--HHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HHHHhhhhcCCHHHHHHHHHHHHHH
Confidence 33334555666666666666777777788888888899999999888765553 33444322 233455666666665
Q ss_pred hhcCCcHHHHHHHHHHHHHHHH
Q psy1352 263 SKEHWNQTIVALVYNVLKTFME 284 (399)
Q Consensus 263 s~~HWn~tV~~la~nvLk~l~e 284 (399)
.... ..|+..+..++..+.+
T Consensus 463 l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 463 LQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HTSC--HHHHHHHHHHHHHHHH
T ss_pred hccC--hHHHHHHHHHHHHHHH
Confidence 5444 5688877777776655
No 25
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=52.41 E-value=72 Score=35.36 Aligned_cols=160 Identities=10% Similarity=0.132 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCCChHH----HHHHHHHHHhhccccc----ccccchHHHHHHHHHHHHcC-CCChHHHHHHhhccCCC
Q psy1352 110 LEILGSIINGFALPLKNE----HKLFLVKVLLPLHKVK----CLSLYHAQLAYCVVQFLEKD-PTLTEPVVKGLLKYWPR 180 (399)
Q Consensus 110 LeilgsIInGfa~PLkeE----h~~fl~~vLlPLhk~~----~l~~y~~qL~~cv~~fl~Kd-p~L~~~vi~~LLk~WP~ 180 (399)
+.++...|+ .+.+| .+..++..|+.+...- .-...-.+|+.++..++.++ |.-=+..+..++..|..
T Consensus 64 ~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~ 139 (980)
T 3ibv_A 64 LQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAA 139 (980)
T ss_dssp HHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcC
Confidence 555566666 34456 7888888888887641 12334578888888877654 33333344444444443
Q ss_pred CCc-hhHhHHHHHHH----HHHhc-c--Ch---------------hhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcc
Q psy1352 181 TCS-QKEVMFLGEIE----EILDV-I--EP---------------TQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNN 237 (399)
Q Consensus 181 tns-~KEvlFL~ELe----eILe~-i--~~---------------~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~N 237 (399)
++. .--..||.-+. |+.+. + +. ..+..+....+..+..|..+.+..++..+|...+.
T Consensus 140 ~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s 219 (980)
T 3ibv_A 140 SSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQ 219 (980)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 333 22234555554 22211 0 10 01333456666778888877888888887775442
Q ss_pred ---hhhHHHhhhccccchhcchHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy1352 238 ---EYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTF 282 (399)
Q Consensus 238 ---e~i~~lI~~n~~~i~PiI~~~L~~~s~~HWn~tV~~la~nvLk~l 282 (399)
---.+++.. ..+++.++..|- +..++..|..+|..+
T Consensus 220 ~i~wi~~~~i~~--~~ll~~l~~~L~-------~~~~r~~A~ecL~ei 258 (980)
T 3ibv_A 220 WVSWININLIVN--EPCMNLLYSFLQ-------IEELRCAACETMTEI 258 (980)
T ss_dssp HTTTSCHHHHHC--HHHHHHHHHHTT-------SHHHHHHHHHHHHHH
T ss_pred HHhhcCHHhhhc--chHHHHHHHHcC-------ChHHHHHHHHHHHHH
Confidence 111122222 234455554331 256777777766554
No 26
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=45.27 E-value=23 Score=25.60 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Q psy1352 111 EILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQ 158 (399)
Q Consensus 111 eilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~ 158 (399)
++..|+|+. .-+.++||+.+...|=-.-..+.+.+|||-+...+..
T Consensus 5 sViRSvikS--S~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKS--SRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHH--SCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 466788886 5678999999999888888899999999887766653
No 27
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=44.82 E-value=2.3e+02 Score=27.61 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=94.7
Q ss_pred CchhHhHHHHHHHHHHhccChhhHHh-hHHHHHHHhhhhhCCCcHHHHHHHHH-hhcchhhHHHhhhccccchhcchHHH
Q psy1352 182 CSQKEVMFLGEIEEILDVIEPTQFIN-IQEPLFRQIAKCVSSPHFQVAERALY-FWNNEYIMSLMEENNHVVMPIMFPAL 259 (399)
Q Consensus 182 ns~KEvlFL~ELeeILe~i~~~eF~k-v~~pLfk~lakCi~S~HfQVAErAL~-~w~Ne~i~~lI~~n~~~i~PiI~~~L 259 (399)
++.|-...+.-+.-++-. . +.|.+ -+..+|--+.||+.|.++.+=. -.| +|. .+.+.++.++ .+..+|
T Consensus 40 ~~~kc~~~l~kll~l~~~-G-~~f~~~e~t~lf~~v~kl~~s~d~~lKr-LvYLyl~------~~~~~~~e~i-Lv~Nsl 109 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQ-G-EHLGTTEATEAFFAMTKLFQSNDPTLRR-MCYLTIK------EMSCIAEDVI-IVTSSL 109 (355)
T ss_dssp CHHHHHHHHHHHHHHHHH-T-CCCCHHHHHHHHHHHHGGGGCCCHHHHH-HHHHHHH------HHTTTSSCGG-GGHHHH
T ss_pred cHHHHHHHHHHHHHHHHC-C-CCCchhHHHHHHHHHHHHhcCCCHHHHH-HHHHHHH------HhCCCHHHHH-HHHHHH
Confidence 545544445554444311 1 34432 3458888889999999987643 333 333 2333355555 788888
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhccchhHHHHH
Q psy1352 260 YRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSL 339 (399)
Q Consensus 260 ~~~s~~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~wnNe~i~~l 339 (399)
.+- -+|=|.-+|++|..++--+. ++++.+.+... .-.|+.+.|--|...|+.- ...|
T Consensus 110 ~kD-l~~~N~~iR~lALRtL~~I~--~~~m~~~l~~~---------------lk~~L~d~~pyVRk~A~l~-----~~kL 166 (355)
T 3tjz_B 110 TKD-MTGKEDSYRGPAVRALCQIT--DSTMLQAIERY---------------MKQAIVDKVPSVSSSALVS-----SLHL 166 (355)
T ss_dssp HHH-HHSSCHHHHHHHHHHHHHHC--CTTTHHHHHHH---------------HHHHHTCSSHHHHHHHHHH-----HHHH
T ss_pred Hhh-cCCCcHhHHHHHHHHHhcCC--CHHHHHHHHHH---------------HHHHcCCCCHHHHHHHHHH-----HHHH
Confidence 664 46678899999988887773 33334333322 2236777777777777644 2244
Q ss_pred hhhccccccccccHHHHhhhhcchhHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy1352 340 MEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANY 393 (399)
Q Consensus 340 i~~n~~~i~Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~e~d~~lf~~~~~~~ 393 (399)
+..+.+.+- -..+.+.+.... =|..|+.-|..++--+.+.|+..+.++...+
T Consensus 167 ~~~~pe~v~-~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l 218 (355)
T 3tjz_B 167 LKCSFDVVK-RWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKMISKF 218 (355)
T ss_dssp TTTCHHHHH-TTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCHHHHH-HHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 444433221 223333222211 1444444344444444445665555555444
No 28
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=39.27 E-value=3.8e+02 Score=28.52 Aligned_cols=103 Identities=10% Similarity=0.142 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCCCChHHHHHHhhccCCCCCch
Q psy1352 105 GVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQ 184 (399)
Q Consensus 105 GI~ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP~tns~ 184 (399)
+++.+|.+++.++..|+..- ... +.+..+.+.+..|+...+.+|+.-.+.+
T Consensus 739 ~~~~~l~l~~~li~~f~~~~--~~~-------------~~~~~~l~~~~~~~l~~~~~~~~~~pd~-------------- 789 (963)
T 2x19_B 739 PQASALDLTRQLVHIFAHEP--AHF-------------PPIEALFLLVTSVTLTLFQQGPRDHPDI-------------- 789 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTCT--TTC-------------HHHHHHHHHHHHHHHHHHHHCTTTCHHH--------------
T ss_pred CccHHHHHHHHHHHHhCCCc--chH-------------HHHHHHHHHHHHHHHHHHhhCcccCchH--------------
Confidence 46778888888888443320 000 1122234455566655555543321222
Q ss_pred hHhHHHHHHHHHHhccChhhH-Hhh-HHHHHHHhhhhhCCCcHHHHHHHHHhhcc
Q psy1352 185 KEVMFLGEIEEILDVIEPTQF-INI-QEPLFRQIAKCVSSPHFQVAERALYFWNN 237 (399)
Q Consensus 185 KEvlFL~ELeeILe~i~~~eF-~kv-~~pLfk~lakCi~S~HfQVAErAL~~w~N 237 (399)
...|.+-+..++...+..-+ ... ..+++..+..++...|.-++..|+.+|.+
T Consensus 790 -~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~ 843 (963)
T 2x19_B 790 -VDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTE 843 (963)
T ss_dssp -HHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 23344555555544433222 123 56777778888999999999999998864
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=32.73 E-value=3.3e+02 Score=27.90 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=105.3
Q ss_pred hHHHHhhhhcc--ccHHHHHHHHHHHhccCCCccccccccceeccCCccCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy1352 58 DLAHLLRHFLR--DSRNLLVDFIWACSNSFSSPFVKSDQEFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKV 135 (399)
Q Consensus 58 d~~~l~~~~~s--d~R~li~~~~~~~~~~~~~~f~~~~~~fiye~~~~~GI~ELLeilgsIInGfa~PLkeEh~~fl~~v 135 (399)
|+++=+++..+ +||+.|..=+-.+-+.|.+. +...-..-+..++.-+..|...+. +.--
T Consensus 14 ~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~------------~~~~k~~~l~kli~~~~~G~d~~~-------~~~~ 74 (618)
T 1w63_A 14 ELIRTIRTARTQAEEREMIQKECAAIRSSFREE------------DNTYRCRNVAKLLYMHMLGYPAHF-------GQLE 74 (618)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT------------CTTTHHHHHHHHHHHHHTTCCCGG-------GHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCC------------CHHHHHHHHHHHHHHHHcCCCCcc-------hHHH
Confidence 56677777776 67766655554443333221 111112236677777778864432 2222
Q ss_pred HhhcccccccccchHHHHHHH-HHHHHcCCCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhccChhhHHhhHHHHHH
Q psy1352 136 LLPLHKVKCLSLYHAQLAYCV-VQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFR 214 (399)
Q Consensus 136 LlPLhk~~~l~~y~~qL~~cv-~~fl~Kdp~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~i~~~eF~kv~~pLfk 214 (399)
++-+..++.+. ...+.|.. ..+.+.+|.++..++..+.|-=--.|+.-.-+-|.-|..|- .+ + +..++..
T Consensus 75 vik~~~s~~~~--~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~-~---~~~~l~~ 145 (618)
T 1w63_A 75 CLKLIASQKFT--DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SS-E---MCRDLAG 145 (618)
T ss_dssp HHHHHHSSSHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CH-H---HHHHHHH
T ss_pred HHHHHcCCchH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CH-H---HHHHHHH
Confidence 23344444332 34555543 44555667665555555544333345555555566655553 22 2 3456677
Q ss_pred HhhhhhCCCcHHHHHHHHHhhcchhhHHHhhhccc---cchhcchHHHHHhhhcCCcHHHHHHHHHHHHHHHHhcHH
Q psy1352 215 QIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNH---VVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSR 288 (399)
Q Consensus 215 ~lakCi~S~HfQVAErAL~~w~Ne~i~~lI~~n~~---~i~PiI~~~L~~~s~~HWn~tV~~la~nvLk~l~e~d~~ 288 (399)
.+.+|+.+.+.-|-..|+.-.. .+...+++ .++|.+...|. .=+..|+..|..++..+.+.+|+
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~-----~l~~~~p~~v~~~~~~l~~lL~-----D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAV-----HVIRKVPELMEMFLPATKNLLN-----EKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHH-----HHHHHCGGGGGGGGGGTTTSTT-----CCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-----HHHHHChHHHHHHHHHHHHHhC-----CCCHhHHHHHHHHHHHHHHhChH
Confidence 7778889999998887765443 23333333 23333333332 22567888888888888776664
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=32.02 E-value=3.2e+02 Score=25.50 Aligned_cols=177 Identities=9% Similarity=0.009 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHHhccChh-hHHh--hHHHHHHHhhhhhCCCcHHHHHHHHHhhcc-----hhhHHHhhhccccchhcchH
Q psy1352 186 EVMFLGEIEEILDVIEPT-QFIN--IQEPLFRQIAKCVSSPHFQVAERALYFWNN-----EYIMSLMEENNHVVMPIMFP 257 (399)
Q Consensus 186 EvlFL~ELeeILe~i~~~-eF~k--v~~pLfk~lakCi~S~HfQVAErAL~~w~N-----e~i~~lI~~n~~~i~PiI~~ 257 (399)
.+.-+..|.++++.++.. .|.+ .+.||.. +++.|++..|-+.|+..+.| +..-+.+.+. -.+|.+..
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~---~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~ 131 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVG---RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHH---TTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHH---HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHH
Confidence 345577888887765443 3433 3334433 48899999999998876543 3333333322 34566666
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhCCCCcccccccccCCCchhHhhhHhhhcc------
Q psy1352 258 ALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFW------ 331 (399)
Q Consensus 258 ~L~~~s~~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~~~~~ci~s~hfQVAEraL~~w------ 331 (399)
.|.. .=+.+++..|..++.-+..-++...+.+.+. ...-.+..++.+....|-.+|....
T Consensus 132 LL~~----~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~----------ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 132 LLDR----DACDTVRVKALFAISCLVREQEAGLLQFLRL----------DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHH----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT----------THHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcc----CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC----------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5532 1246788888888887765555433333321 0001123344556677766665322
Q ss_pred chhHHHHHhhhccccccccccHHHHhhhhcchhHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy1352 332 NNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDEL 389 (399)
Q Consensus 332 nNe~i~~li~~n~~~i~Pii~~~L~~~s~~HWn~~i~~l~~~vlk~~~e~d~~lf~~~ 389 (399)
+++..-.++.. .++|.++.-| . +-+..|+.-+..++.-+....+..-..|
T Consensus 198 ~~~~~~~vv~~---g~i~~Lv~LL----~-~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 198 HPEHKGTLCSM---GMVQQLVALV----R-TEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp CGGGHHHHHHT---THHHHHHHHH----T-SCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHc---CCHHHHHHHH----c-CCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 23333333322 2333333333 2 2256677777777776666655544433
No 31
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=31.02 E-value=99 Score=25.30 Aligned_cols=83 Identities=8% Similarity=0.179 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhccC---hh----hHHhhHHHHHHHhhhhhCCCc
Q psy1352 152 LAYCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIE---PT----QFINIQEPLFRQIAKCVSSPH 224 (399)
Q Consensus 152 L~~cv~~fl~Kdp~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~i~---~~----eF~kv~~pLfk~lakCi~S~H 224 (399)
=..=+.+++-.+..-+..++..+.++--.+.+.+.+-+|.-+.+|+-... .. .|.+++.++|..++ ...+
T Consensus 23 sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~---~~~~ 99 (132)
T 4flb_A 23 SIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK---DPSV 99 (132)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTC---STTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhC---CHHH
Confidence 34445566666677788888888887778889999999999999997542 22 35566666665432 4456
Q ss_pred HHHHHHHHHhhcc
Q psy1352 225 FQVAERALYFWNN 237 (399)
Q Consensus 225 fQVAErAL~~w~N 237 (399)
.+-..+-+.+|..
T Consensus 100 ~~kl~~ll~iW~~ 112 (132)
T 4flb_A 100 SKSVERIFKIWED 112 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 6667788888875
No 32
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=29.76 E-value=63 Score=25.93 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHcCCCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhccChhhH
Q psy1352 156 VVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQF 205 (399)
Q Consensus 156 v~~fl~Kdp~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~i~~~eF 205 (399)
++...++ -.....-|.++..-=+...+..||.|+.|+..++..+|.+-|
T Consensus 12 viaL~e~-rwi~~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf 60 (92)
T 1xl3_C 12 IVALVDX-RWAGIHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVF 60 (92)
T ss_dssp HHHHHHS-TTCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGS
T ss_pred HHHHHHh-cccCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhc
Confidence 3333343 366777788888888999999999999999999999987655
No 33
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=25.80 E-value=2.8e+02 Score=23.52 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=59.3
Q ss_pred HHHhhccCCCCCchhHhHHHHHHHHHHhc-cChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhc------chhhHHH
Q psy1352 171 VKGLLKYWPRTCSQKEVMFLGEIEEILDV-IEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWN------NEYIMSL 243 (399)
Q Consensus 171 i~~LLk~WP~tns~KEvlFL~ELeeILe~-i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~------Ne~i~~l 243 (399)
++.--+.=|.+.+.+.+ .+|... -+.++|..|+.-|++|+.. ...+..+...||.+.. ++.++.-
T Consensus 10 VreAT~~d~wGP~~~~m------~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~~ 81 (144)
T 1eyh_A 10 VREATSNDPWGPSSSLM------SEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQQ 81 (144)
T ss_dssp HHHHTCSSSSCCCHHHH------HHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhCCCCCCCCHHHH------HHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHHH
Confidence 33333333555555443 445543 3667899999999998864 3357888888888764 2333333
Q ss_pred hhhccccchhcchHHHHHh-----hhcCCcHHHHHHHHHHHHHHHH
Q psy1352 244 MEENNHVVMPIMFPALYRI-----SKEHWNQTIVALVYNVLKTFME 284 (399)
Q Consensus 244 I~~n~~~i~PiI~~~L~~~-----s~~HWn~tV~~la~nvLk~l~e 284 (399)
+.++...| ..|..- .-.-|-..||..|..++.+|.|
T Consensus 82 ~~~~~~~i-----~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 82 CKENMYAV-----QTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHTHHHH-----HGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHH-----hhhccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 33332222 111110 1123667899999999999854
No 34
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=25.73 E-value=4e+02 Score=28.72 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcC---CCCChH-----HHHHHHHHHHhhcccccc--cccchHHHHHHHHHHHHc-CCCChHHHHHHhhcc
Q psy1352 109 LLEILGSIINGF---ALPLKN-----EHKLFLVKVLLPLHKVKC--LSLYHAQLAYCVVQFLEK-DPTLTEPVVKGLLKY 177 (399)
Q Consensus 109 LLeilgsIInGf---a~PLke-----Eh~~fl~~vLlPLhk~~~--l~~y~~qL~~cv~~fl~K-dp~L~~~vi~~LLk~ 177 (399)
.|-.+|+|-.|. ..|.+. +...|+.+.++|....+. -+.-...-..++.+|.+. .|.....++.+++++
T Consensus 425 al~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~ 504 (960)
T 1wa5_C 425 YIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATF 504 (960)
T ss_dssp HHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 355667776542 223332 567788888888876552 111122234455555442 334556666666654
Q ss_pred CCCCCchhHhHHHHHHHHHHhcc----------ChhhHHhhHHHHHHHhhhhhCCC
Q psy1352 178 WPRTCSQKEVMFLGEIEEILDVI----------EPTQFINIQEPLFRQIAKCVSSP 223 (399)
Q Consensus 178 WP~tns~KEvlFL~ELeeILe~i----------~~~eF~kv~~pLfk~lakCi~S~ 223 (399)
=--.+..=.+---.-+..+++.. ..+.+...+.++...+-.+++..
T Consensus 505 L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 505 LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (960)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred hCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc
Confidence 32222222233334444555432 23456777788888888777763
No 35
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=25.16 E-value=5.3e+02 Score=28.93 Aligned_cols=218 Identities=11% Similarity=0.105 Sum_probs=103.2
Q ss_pred ccchhhHH-HHhhhhcc---ccHHHHHHHHHHHhccCCCccccccccceeccCCccCHHHHHHHHHHHHhcCCCCChHHH
Q psy1352 53 NQFRIDLA-HLLRHFLR---DSRNLLVDFIWACSNSFSSPFVKSDQEFVYETEHFNGVGELLEILGSIINGFALPLKNEH 128 (399)
Q Consensus 53 ~~~~id~~-~l~~~~~s---d~R~li~~~~~~~~~~~~~~f~~~~~~fiye~~~~~GI~ELLeilgsIInGfa~PLkeEh 128 (399)
..++++.+ .++..+++ +.|+...+++- -+++-+..... ....+-.+....-=-=.+.+|...|+..-..+.++.
T Consensus 23 ~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~-q~q~sp~aw~~-~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHGEGAQQRMAQEVLT-HLKEHPDAWTR-VDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCSSHHHHHHHHHHHH-TSSCCSCHHHH-HTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHcCchHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 44567777 88888886 44555555553 23322222222 122221111111111124455555553223466888
Q ss_pred HHHHHHHHhhccccc--------ccccchHHHHHHHHHHHHcC-CCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhc
Q psy1352 129 KLFLVKVLLPLHKVK--------CLSLYHAQLAYCVVQFLEKD-PTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDV 199 (399)
Q Consensus 129 ~~fl~~vLlPLhk~~--------~l~~y~~qL~~cv~~fl~Kd-p~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~ 199 (399)
+..++..|+.+...- .-..|-.+|+.++......+ |.-=+..+..++..|. ++...-..+|.-+..+-+-
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~-~~~~~~~~~L~IL~~L~EE 179 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASR-TSESLCQNNMVILKLLSEE 179 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHH-HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 888888888877431 12455688888888777543 2222223333333332 2333222333333333322
Q ss_pred c--------Ch-------hhHHhhHHHHHHHhhhhhC-CCcHHHHHHHHHhhcchhhHHHh-----hhccccchhcc-hH
Q psy1352 200 I--------EP-------TQFINIQEPLFRQIAKCVS-SPHFQVAERALYFWNNEYIMSLM-----EENNHVVMPIM-FP 257 (399)
Q Consensus 200 i--------~~-------~eF~kv~~pLfk~lakCi~-S~HfQVAErAL~~w~Ne~i~~lI-----~~n~~~i~PiI-~~ 257 (399)
+ +. +.+......++..+..|+. +.+.+++..+|.... ++++++ .. ..+++.+ +.
T Consensus 180 V~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~--~~~sWI~i~~i~~--~~ll~~L~~~ 255 (1073)
T 3gjx_A 180 VFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLL--RFLNWIPLGYIFE--TKLISTLIYK 255 (1073)
T ss_dssp HTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHTTTSCTHHHHS--SSHHHHHHHH
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH--HHHHhcCHHHhcc--chHHHHHHHH
Confidence 1 11 1122233445555556663 457777776665443 222222 21 1233333 22
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy1352 258 ALYRISKEHWNQTIVALVYNVLKTFME 284 (399)
Q Consensus 258 ~L~~~s~~HWn~tV~~la~nvLk~l~e 284 (399)
.| . +...+..|..+|.++..
T Consensus 256 ~L-~------~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 256 FL-N------VPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp TS-S------SHHHHHHHHHHHHHHHH
T ss_pred hc-C------ChHHHHHHHHHHHHHHh
Confidence 22 1 34577777777777654
No 36
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=24.60 E-value=7e+02 Score=27.08 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=85.2
Q ss_pred chhhHH-HHhhhhcc---ccHHHHHHHHHHHhccCCCccccccccceeccCCccCH-HHHHHHHHHHHhcCCCCChHHHH
Q psy1352 55 FRIDLA-HLLRHFLR---DSRNLLVDFIWACSNSFSSPFVKSDQEFVYETEHFNGV-GELLEILGSIINGFALPLKNEHK 129 (399)
Q Consensus 55 ~~id~~-~l~~~~~s---d~R~li~~~~~~~~~~~~~~f~~~~~~fiye~~~~~GI-~ELLeilgsIInGfa~PLkeEh~ 129 (399)
.++.-+ +++..+++ +.|+...+.+-.. ++-+..... ...|..+.....+ .=.+-.|...|+..-..+.+|.+
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~--l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~ 89 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQK--ADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGG--HHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHH--HHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence 455545 77777776 4566666666443 322332222 1122222111111 01133344444432234668889
Q ss_pred HHHHHHHhhcccccc--------cccchHHHHHHHHHHHHc-----CCCChHHHHHHhhccCCCCCc-hhH--hHHHHHH
Q psy1352 130 LFLVKVLLPLHKVKC--------LSLYHAQLAYCVVQFLEK-----DPTLTEPVVKGLLKYWPRTCS-QKE--VMFLGEI 193 (399)
Q Consensus 130 ~fl~~vLlPLhk~~~--------l~~y~~qL~~cv~~fl~K-----dp~L~~~vi~~LLk~WP~tns-~KE--vlFL~EL 193 (399)
..++..|+.+..... -...-.+++.++...... .|++...++..+ - ++. .++ ..+|.-+
T Consensus 90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHHHHHHHH
Confidence 999999998876432 134467888888876655 455555554443 2 222 233 2333333
Q ss_pred HHHHhccCh------------hhHHhhHHHHHHHhhhhhCC-CcHHHHHHHHHhh
Q psy1352 194 EEILDVIEP------------TQFINIQEPLFRQIAKCVSS-PHFQVAERALYFW 235 (399)
Q Consensus 194 eeILe~i~~------------~eF~kv~~pLfk~lakCi~S-~HfQVAErAL~~w 235 (399)
-|.+..... +.+..-...++..+..++.+ .+..+...|+...
T Consensus 165 ~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l 219 (1049)
T 3m1i_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESL 219 (1049)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 322222211 22333445566666666643 3456666666543
No 37
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=23.81 E-value=3.9e+02 Score=23.87 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=87.8
Q ss_pred cCCccCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhhcccccccccch----HHHHHHHHHHHHcCCCChHHHHHHh
Q psy1352 100 TEHFNGVGELLEILGSIINGFALPLK-NEHKLFLVKVLLPLHKVKCLSLYH----AQLAYCVVQFLEKDPTLTEPVVKGL 174 (399)
Q Consensus 100 ~~~~~GI~ELLeilgsIInGfa~PLk-eEh~~fl~~vLlPLhk~~~l~~y~----~qL~~cv~~fl~Kdp~L~~~vi~~L 174 (399)
+.+.......|+++..++.+....-. ..+...+...++|....+.++.=. ..-..|+..+++.... ...++..+
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~~~e~l 144 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQSVELV 144 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 34556667789999999986654321 222233355566655555443322 3345677778876543 45567888
Q ss_pred hccCCCCCchhHhHHHHHHHHHHhccChhh--HHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhc
Q psy1352 175 LKYWPRTCSQKEVMFLGEIEEILDVIEPTQ--FINIQEPLFRQIAKCVSSPHFQVAERALYFWN 236 (399)
Q Consensus 175 Lk~WP~tns~KEvlFL~ELeeILe~i~~~e--F~kv~~pLfk~lakCi~S~HfQVAErAL~~w~ 236 (399)
+..+-.-|+.=...-+..|..++....... ....+.++.+.+++|++..+..|=+.|..+.-
T Consensus 145 ~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 145 IPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp GGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 877776777777777888888876544332 23456678888999999999999888866543
No 38
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=23.09 E-value=2.9e+02 Score=26.06 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHHHcCCCChHHHHHHhhccCCCCCchh
Q psy1352 108 ELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKC--LSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQK 185 (399)
Q Consensus 108 ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~--l~~y~~qL~~cv~~fl~Kdp~L~~~vi~~LLk~WP~tns~K 185 (399)
-.+++++.++.| .|+.++...-+.+++.-+.+.+. +..|-.+...-+ +=-+++..++..+.+.=-..|..-
T Consensus 94 ~A~r~L~~LLe~--vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-----kv~~~~~~V~~~l~sLl~Skd~~v 166 (265)
T 3b2a_A 94 KALRALGYLVKD--VPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-----QPLEDSKLVRTYINELVVSPDLYT 166 (265)
T ss_dssp HHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-----CBSCCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-----CcccchHHHHHHHHHHHhCCChhH
Confidence 468999999999 89988888878888888887553 233332222221 223334444444444444445555
Q ss_pred HhHHHHHHHHHHhccChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhcc
Q psy1352 186 EVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNN 237 (399)
Q Consensus 186 EvlFL~ELeeILe~i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~N 237 (399)
+.+-|.-+.+|...-++. .+..++|.-++.-+++...-+.|+||....+
T Consensus 167 K~agl~~L~eia~~S~D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 167 KVAGFCLFLNMLNSSADS---GHLTLILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp HHHHHHHHHHHGGGCSSC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555666666665544332 2445677888888999999999999887653
No 39
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=22.11 E-value=3.7e+02 Score=22.97 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=55.4
Q ss_pred HHHHHhc-cChhhHHhhHHHHHHHhhhhhCCCcHHHHHHHHHhhc------chhhHHHhhhccccchhcchHHHHH----
Q psy1352 193 IEEILDV-IEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWN------NEYIMSLMEENNHVVMPIMFPALYR---- 261 (399)
Q Consensus 193 LeeILe~-i~~~eF~kv~~pLfk~lakCi~S~HfQVAErAL~~w~------Ne~i~~lI~~n~~~i~PiI~~~L~~---- 261 (399)
+.+|... .++++|..|+.-|++|+...- ..+....+.||.+.. .+.++.-+.++...|- .|..
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~-----~L~~F~~~ 105 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIR-----ILETFHYI 105 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHH-----GGGGCCCB
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----hhhccccc
Confidence 3444443 467889999999999987431 246788888887763 2344444444433221 1211
Q ss_pred -hhhcCCcHHHHHHHHHHHHHHHHhcHHHHH
Q psy1352 262 -ISKEHWNQTIVALVYNVLKTFMEMNSRLFD 291 (399)
Q Consensus 262 -~s~~HWn~tV~~la~nvLk~l~e~d~~lF~ 291 (399)
..-.-|-..||..|..++.+|. |++...
T Consensus 106 d~~G~D~G~~VR~kak~l~~LL~--D~e~L~ 134 (150)
T 3onk_A 106 DSQGRDQGINVRTRVKALIELLS--DDNKIR 134 (150)
T ss_dssp CTTSCBCHHHHHHHHHHHHHHHT--CHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHc--CHHHHH
Confidence 0122467789999999999984 444333
No 40
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=21.52 E-value=4.8e+02 Score=27.84 Aligned_cols=189 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCccccccccceeccCCccCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhcccccccccchHHH
Q psy1352 73 LLVDFIWACSNSFSSPFVKSDQEFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQL 152 (399)
Q Consensus 73 li~~~~~~~~~~~~~~f~~~~~~fiye~~~~~GI~ELLeilgsIInGfa~PLkeEh~~fl~~vLlPLhk~~~l~~y~~qL 152 (399)
.+.+.+...-..+ .++.-....++...-.-.+....|++++.++.+|.. .+++...+... ..++
T Consensus 716 ~~~~~~~~~~~~~-~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~--~~~~~~~l~~~-------------~~~~ 779 (971)
T 2x1g_F 716 AMKHAITNLRSSF-QPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFK--DEGCKPLMQQL-------------LREF 779 (971)
T ss_dssp HHHHHHHHHHC---CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-------HHHHHH-------------HHHH
T ss_pred HHHHHHHhhhhhc-cccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC--CcchHHHHHHH-------------HHHH
Q ss_pred HHHHHHHHHc----CCCChHHHHHHhhccCCCCCchhHhHHHHHHHHHHhccChhhH-Hhh-HHHHHHHhhhhhCCCcHH
Q psy1352 153 AYCVVQFLEK----DPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQF-INI-QEPLFRQIAKCVSSPHFQ 226 (399)
Q Consensus 153 ~~cv~~fl~K----dp~L~~~vi~~LLk~WP~tns~KEvlFL~ELeeILe~i~~~eF-~kv-~~pLfk~lakCi~S~HfQ 226 (399)
..++...+.+ + |..++-..-.|++-+..++...+..-+ ..+ +.+++.....|+..+|.-
T Consensus 780 ~~~~~~~l~~~~~~~---------------~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~ 844 (971)
T 2x1g_F 780 IQHSFKLFESTPEQN---------------FSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESG 844 (971)
T ss_dssp HHHHHHHHTSCTTTH---------------HHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSS
T ss_pred HHHHHHHHhcccccC---------------CccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHH
Q ss_pred HHHHHHHhh--------cchhhHHHhhhccccchhcchHHHHHhhhcCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy1352 227 VAERALYFW--------NNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTAN 296 (399)
Q Consensus 227 VAErAL~~w--------~Ne~i~~lI~~n~~~i~PiI~~~L~~~s~~HWn~tV~~la~nvLk~l~e~d~~lF~~~~~~ 296 (399)
++..|+.+| ..+.+-+++......++..++.++.. .=+.+....+..+++.+....|..+..-+..
T Consensus 845 ~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~----~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~ 918 (971)
T 2x1g_F 845 AIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGY----LTPRSQVDKFADILLAMNRKYAAEMAVWMKS 918 (971)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHT----TSCGGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcc----cCChhHHHHHHHHHHHHHHHCcHHHHHHHHH
Done!