RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1352
(399 letters)
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 326 bits (839), Expect = e-109
Identities = 132/208 (63%), Positives = 163/208 (78%)
Query: 95 EFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAY 154
F+YETE NGV ELLEILGSIINGFALPLK EHK FL+KVLLPLHK K LSLYH QL+Y
Sbjct: 177 RFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLSY 236
Query: 155 CVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFR 214
CVVQF+EKDP+L E V++GLLK+WP T S KEV+FL E+EEIL+ I P +F I PLF+
Sbjct: 237 CVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVPLFK 296
Query: 215 QIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVAL 274
+A+C+SSPHFQVAERAL WNNEY ++L+ +N+ +++PI+FPALYR +K HWNQ++ L
Sbjct: 297 ILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVRNL 356
Query: 275 VYNVLKTFMEMNSRLFDELTANYKAERQ 302
NVLK ME++ LFDE YK +
Sbjct: 357 ALNVLKLLMEIDPDLFDECGNKYKEKEA 384
Score = 114 bits (287), Expect = 3e-28
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 382
VAERAL WNNEY ++L+ +N+ +++PI+FPALYR +K HWNQ++ L NVLK ME++
Sbjct: 309 VAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVRNLALNVLKLLMEID 368
Query: 383 SRLFDELTANYKAERQK 399
LFDE YK + K
Sbjct: 369 PDLFDECGNKYKEKEAK 385
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A;
Provisional.
Length = 170
Score = 106 bits (267), Expect = 1e-27
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 323 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 382
VAERAL+ WNN++I++L+ +N V++PI+FPAL + ++ HWNQ + L NV K F EM+
Sbjct: 68 VAERALFLWNNDHIVNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMD 127
Query: 383 SRLFDELTANYKAERQK 399
LF+E ++ + K
Sbjct: 128 PELFEECLRKFEEDEAK 144
Score = 105 bits (264), Expect = 4e-27
Identities = 33/78 (42%), Positives = 53/78 (67%)
Query: 227 VAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 286
VAERAL+ WNN++I++L+ +N V++PI+FPAL + ++ HWNQ + L NV K F EM+
Sbjct: 68 VAERALFLWNNDHIVNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMD 127
Query: 287 SRLFDELTANYKAERQNS 304
LF+E ++ + +
Sbjct: 128 PELFEECLRKFEEDEAKA 145
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members
of this family all are from cyanobacteria or
plastid-containing eukaryotes. A member from Arabidopsis
(where both plastoquinone and ubiquinone contain the
C(45) prenyl moiety) was characterized by heterologous
expression as a solanesyl diphosphate synthase
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 322
Score = 29.3 bits (66), Expect = 3.9
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 113 LGSIING-FALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDP 164
L +I F+ E L LV+ + K + L+ AQLA + FL P
Sbjct: 253 LSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP 305
>gnl|CDD|227822 COG5535, RAD4, DNA repair protein RAD4 [DNA replication,
recombination, and repair].
Length = 650
Score = 29.4 bits (66), Expect = 4.1
Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 27/147 (18%)
Query: 263 SKEHWNQT-IVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDEL 321
+ + N+ V + K + E + ++ +N S RD
Sbjct: 196 LRFYGNKPFKNIGVEDNRKLAKRTMKQ--MESSDFWEEIFENYSLEVVPLKSADGRRDAD 253
Query: 322 AVAERAL-----------------YFWNNEYIMSLMEENNHVVMPIMFPA----LYRISK 360
A F NN + L E + + +P + +
Sbjct: 254 VRGFEAEHRILNVFARLIASLIQPVFSNNSDLDVLSEGLLEYIDSLEYPGFWGEVVDKFE 313
Query: 361 EHW---NQTIVALVYNVLKTFMEMNSR 384
+ W + + +VY+ LK E +
Sbjct: 314 KKWVFVDPVRLYIVYSELKCKFEPAAS 340
Score = 29.0 bits (65), Expect = 4.8
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 232 LYFWNNEYIMSLMEENNHVVMPIMFPA----LYRISKEHW---NQTIVALVYNVLKTFME 284
F NN + L E + + +P + ++ W + + +VY+ LK E
Sbjct: 277 PVFSNNSDLDVLSEGLLEYIDSLEYPGFWGEVVDKFEKKWVFVDPVRLYIVYSELKCKFE 336
Query: 285 MNSR 288
+
Sbjct: 337 PAAS 340
>gnl|CDD|226775 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 29.1 bits (65), Expect = 5.0
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 34 SSSIRVTTFSFTLRTSGFM---NQFRIDLAHLLRHFLRDSRNLLVDFIWACSNSFS 86
+S I VT F++ +QF LLR FLRD N +V I+ C+ +S
Sbjct: 88 ASMISVTGIVFSITVVALQLASSQFSP---RLLRTFLRDVPNQVVLAIFLCTFVYS 140
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 29.0 bits (65), Expect = 5.9
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 23/131 (17%)
Query: 94 QEFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLA 153
QE VYE +HF G+LL+ + I A FL K+ PL +L L
Sbjct: 1646 QEVVYEGKHF---GQLLQ---TPIEEVAETFP-----FLKKIQKPLQ-----ALIDNGLG 1689
Query: 154 YCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLF 213
Y + +L+E + + K+ + L EI LD + + L
Sbjct: 1690 YLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSA-------LL 1742
Query: 214 RQIAKCVSSPH 224
Q+ VS H
Sbjct: 1743 VQLRTLVSLGH 1753
>gnl|CDD|233434 TIGR01484, HAD-SF-IIB, HAD-superfamily hydrolase, subfamily IIB.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class II subfamilies are characterized by a domain
that is located between the second and third conserved
catalytic motifs of the superfamily domain. The IIB
subfamily is distinguished from the IIA subfamily
(TIGR01460) by homology and the predicted secondary
structure of this domain by PSI-PRED. The IIB
subfamily's Class II domain has the following predicted
structure: Helix-Sheet-Sheet-(Helix or
Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB
subfamily consists of Trehalose-6-phosphatase
(TIGR00685), plant and cyanobacterial
Sucrose-phosphatase and a closely related group of
bacterial and archaeal sequences, eukaryotic
phosphomannomutase (pfam03332), a large subfamily
("Cof-like hydrolases", TIGR00099) containing many
closely related bacterial sequences, a hypothetical
equivalog containing the E. coli YedP protein, as well
as two small clusters containing OMNI|TC0379 and
OMNI|SA2196 whose relationship to the other groups is
unclear [Unknown function, Enzymes of unknown
specificity].
Length = 204
Score = 27.7 bits (62), Expect = 7.7
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 243 LMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQ 302
L++ N H + P AL R+ + V LV ++ E+ L +L
Sbjct: 10 LLDPNAHELSPETIEALERLREAGV---KVVLVTG--RSLAEIKE-LLKQLPLPL----- 58
Query: 303 NSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEH 362
+ G E+ E + F E I+ + EE L +S EH
Sbjct: 59 IAENGALIFYP-----GEILYIEPSDVF---EEILGIKEEIGA--------ELKSLS-EH 101
Query: 363 WNQTI-------VALVYNVLKTFMEMNSRLFDEL 389
+ T VA+ Y + E++S++ + L
Sbjct: 102 YVGTFIEDKAIAVAIHYVGAELGQELDSKMRERL 135
>gnl|CDD|236812 PRK10992, PRK10992, iron-sulfur cluster repair di-iron protein;
Provisional.
Length = 220
Score = 27.7 bits (62), Expect = 9.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 9/32 (28%)
Query: 230 RALYFWNNEYIMSLME----ENNHVVMPIMFP 257
RALY NE I LME ENN ++FP
Sbjct: 188 RALYNGINELIDDLMEHIHLENN-----VLFP 214
Score = 27.7 bits (62), Expect = 9.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 9/32 (28%)
Query: 326 RALYFWNNEYIMSLME----ENNHVVMPIMFP 353
RALY NE I LME ENN ++FP
Sbjct: 188 RALYNGINELIDDLMEHIHLENN-----VLFP 214
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.416
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,397,961
Number of extensions: 1986821
Number of successful extensions: 2104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2102
Number of HSP's successfully gapped: 23
Length of query: 399
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 300
Effective length of database: 6,546,556
Effective search space: 1963966800
Effective search space used: 1963966800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)