RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1352
(399 letters)
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; PP2A, shugoshin, nucleus, phosphoprotein,
hydrolase, iron, M metal-binding, methylation, protein
phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo
sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Length = 403
Score = 282 bits (722), Expect = 3e-92
Identities = 163/269 (60%), Positives = 194/269 (72%), Gaps = 7/269 (2%)
Query: 42 FSFTLRTSGFMNQFRIDLAHLLRHFLRDSRNLLVDFIWACSNSFSS--PFVKSD-----Q 94
F + +F + L L R+ L + F +++
Sbjct: 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 176
Query: 95 EFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAY 154
F+YETEH NG+ ELLEILGSIINGFALPLK EHK+FL+KVLLPLHKVK LS+YH QLAY
Sbjct: 177 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 236
Query: 155 CVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFR 214
CVVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFR
Sbjct: 237 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR 296
Query: 215 QIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVAL 274
Q+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L
Sbjct: 297 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 356
Query: 275 VYNVLKTFMEMNSRLFDELTANYKAERQN 303
+YN LK FMEMN +LFD+ T +KAE+
Sbjct: 357 IYNALKLFMEMNQKLFDDCTQQFKAEKLK 385
Score = 99.4 bits (247), Expect = 3e-23
Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 19/235 (8%)
Query: 173 GLLKYWPRTCSQKEVMFLGE------IEEILDVIEP--TQFINIQEPLFRQIAKCVSSPH 224
GL Y + + F+ E I E+L+++ F + + V P
Sbjct: 162 GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPL 221
Query: 225 FQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFME 284
+V ++Y Y + E + + + AL + + + V + + +
Sbjct: 222 HKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDV 281
Query: 285 MNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSLMEENN 344
+ F ++ P + ++ P VAERALY+WNNEYIMSL+ +N
Sbjct: 282 IEPSEFVKIM---------EPLFRQLAKCVSSP--HFQVAERALYYWNNEYIMSLISDNA 330
Query: 345 HVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQK 399
++PIMFP+LYR SK HWN+TI L+YN LK FMEMN +LFD+ T +KAE+ K
Sbjct: 331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLK 385
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE
subunit gamma isoform; heat repeat, signaling protein,
hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo
sapiens} SCOP: a.118.1.20
Length = 449
Score = 281 bits (720), Expect = 2e-91
Identities = 163/270 (60%), Positives = 191/270 (70%), Gaps = 7/270 (2%)
Query: 42 FSFTLRTSGFMNQFRIDLAHLLRHFLRDSRNLLVDFIWACSNSFS-------SPFVKSDQ 94
F + +F + L L R+ L + F
Sbjct: 150 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 209
Query: 95 EFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAY 154
F+YETEH NG+ ELLEILGSIINGFALPLK EHK+FL+KVLLPLHKVK LS+YH QLAY
Sbjct: 210 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 269
Query: 155 CVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFR 214
CVVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFR
Sbjct: 270 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR 329
Query: 215 QIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVAL 274
Q+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK HWN+TI L
Sbjct: 330 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 389
Query: 275 VYNVLKTFMEMNSRLFDELTANYKAERQNS 304
+YN LK FMEMN +LFD+ T +KAE+
Sbjct: 390 IYNALKLFMEMNQKLFDDCTQQFKAEKLKE 419
Score = 96.4 bits (239), Expect = 5e-22
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 23/237 (9%)
Query: 173 GLLKYWPRTCSQKEVMFLGE------IEEILDVIEP--TQFINIQEPLFRQIAKCVSSPH 224
GL Y + + F+ E I E+L+++ F + + V P
Sbjct: 195 GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPL 254
Query: 225 FQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALVYNVLK--TF 282
+V ++Y Y + E + + + AL + +W +T + K F
Sbjct: 255 HKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLK----YWPKT------HSPKEVMF 304
Query: 283 MEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSLMEE 342
+ + ++ + + P + ++ P VAERALY+WNNEYIMSL+ +
Sbjct: 305 LNELEEIL-DVIEPSEFVKIMEPLFRQLAKCVSSP--HFQVAERALYYWNNEYIMSLISD 361
Query: 343 NNHVVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQK 399
N ++PIMFP+LYR SK HWN+TI L+YN LK FMEMN +LFD+ T +KAE+ K
Sbjct: 362 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLK 418
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A
{Homo sapiens} SCOP: a.118.1.20
Length = 392
Score = 243 bits (622), Expect = 2e-77
Identities = 141/230 (61%), Positives = 163/230 (70%), Gaps = 7/230 (3%)
Query: 42 FSFTLRTSGFMNQFRIDLAHLLRHFLRDSRNLLVDFIWACSNSFS-------SPFVKSDQ 94
F + +F + L L R+ L + F
Sbjct: 162 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 221
Query: 95 EFVYETEHFNGVGELLEILGSIINGFALPLKNEHKLFLVKVLLPLHKVKCLSLYHAQLAY 154
F+YETEH NG+ ELLEILGSIINGFALPLK EHK+FL+KVLLPLHKVK LS+YH QLAY
Sbjct: 222 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 281
Query: 155 CVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEVMFLGEIEEILDVIEPTQFINIQEPLFR 214
CVVQFLEKD TLTEPVV LLKYWP+T S KEVMFL E+EEILDVIEP++F+ I EPLFR
Sbjct: 282 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR 341
Query: 215 QIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISK 264
Q+AKCVSSPHFQVAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK
Sbjct: 342 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391
Score = 59.0 bits (142), Expect = 9e-10
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 23/164 (14%)
Query: 197 LDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENNHVVMPIMF 256
L + + PL + K +S H Q+A Y + E + + +
Sbjct: 251 LKEEHKIFLLKVLLPLHK--VKSLSVYHPQLA----------YCVVQFLEKDSTLTEPVV 298
Query: 257 PALYRISKEHWNQTIVALVYNVLKTFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAM 316
AL + + + V + + + + F ++ P + ++
Sbjct: 299 MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM---------EPLFRQLAKCVSS 349
Query: 317 PRDELAVAERALYFWNNEYIMSLMEENNHVVMPIMFPALYRISK 360
P VAERALY+WNNEYIMSL+ +N ++PIMFP+LYR SK
Sbjct: 350 P--HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 6e-04
Identities = 48/361 (13%), Positives = 99/361 (27%), Gaps = 119/361 (32%)
Query: 33 ESSSIRVTTFSFTLRTSGFMNQFRIDLAHLLRHF----LRDSRNLLVDFI---------W 79
++ S R TL + G + + + + F L++ F +
Sbjct: 2 DAYSTR----PLTL-SHGSL-EHVLLVPTAS-FFIASQLQE------QFNKILPEPTEGF 48
Query: 80 ACSNSFSSP------FVKSDQEFVYETEHFNGVGELLEILGSIINGFA---LPLKNEHKL 130
A + ++P F+ +V + VG+ ++L + F L + H
Sbjct: 49 AADDEPTTPAELVGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA- 103
Query: 131 FLVKVLLPLHKVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWPRTCSQKEV--- 187
L LL + + Y + + K P + L R +
Sbjct: 104 -LAAKLLQENDTTLVKTKELIKNYITARIMAKRP-FDKKSNSALF----RAVGEGNAQLV 157
Query: 188 -MF---------LGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYF--- 234
+F E+ ++ + L + A+ +S + F
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHV--LV---GDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 235 -----W--------NNEYIMSLMEENNHVVMPIMFPALYRISKEHWNQTIVALV-YNVLK 280
W + +Y++S +PI P + ++ L Y V
Sbjct: 213 LNILEWLENPSNTPDKDYLLS---------IPISCPLI----------GVIQLAHYVVTA 253
Query: 281 TFMEMN-SRLFDELTANYKAERQNSPFGH------AFSTSLAMPRDE-LAVAERAL--YF 330
+ L L GH A + + + +A+ F
Sbjct: 254 KLLGFTPGELRSYLKGA---------TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 331 W 331
+
Sbjct: 305 F 305
Score = 37.3 bits (86), Expect = 0.010
Identities = 50/286 (17%), Positives = 82/286 (28%), Gaps = 113/286 (39%)
Query: 208 IQEP-----LFRQIAKCVSSPHFQ-VAERALYFWNNEYIMSLME--ENNHVVMPIMFPAL 259
QE L++ +S Q V RA + + Y S+++ NN V + I F
Sbjct: 1626 SQEQGMGMDLYK------TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 260 Y--RISKEHWNQTIVALVYNVLKTFMEMNSRLFDE------------------LTAN--- 296
RI + + A+++ + ++F E T
Sbjct: 1680 KGKRIRENY-----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 297 ---------YKA--ERQNSP----F-GH---------AFSTSL----------------- 314
++ + P F GH + + +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 315 -AMPRDELAVAERALYFWN-NEYIMSLMEENNHVVMPIMFPALYRISKEH-W-------- 363
A+PRDEL + + N S +E V+ R+ K W
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-------RVGKRTGWLVEIVNYN 1847
Query: 364 --NQTIV------AL--VYNVLKTFMEMNSRLFDELTANYKAERQK 399
NQ V AL V NVL + EL + E +
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDII-ELQKSLSLEEVE 1892
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 71/242 (29%)
Query: 196 ILD------VIEP----------TQFINIQEPLFRQIAKCVSSPHFQV------AERALY 233
+L T+F + + L +S H + + L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 234 FWNNEYIMSLMEENNHVVMPI---MFPALYRISKEHWNQ----------TIVALVYNVLK 280
+ + L E P + R W+ TI+ NVL+
Sbjct: 309 KYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 281 TFMEMNSRLFDELTANYKAERQNSPFGHAFSTSLAMPRDELAVAERALYFWNNEYIMSLM 340
E ++FD L+ F S +P L++ W + +
Sbjct: 368 P-AEY-RKMFDRLS--------------VFPPSAHIPTILLSL------IWFD------V 399
Query: 341 EENNHVVMPIMFPALYRIS--KEHWNQTIVAL--VYNVLKTFMEMNSRLFDELTANYKAE 396
++ VM ++ L++ S ++ ++ +++ +Y LK +E L + +Y
Sbjct: 400 IKS--DVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 397 RQ 398
+
Sbjct: 457 KT 458
Score = 28.7 bits (63), Expect = 4.8
Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 50/178 (28%)
Query: 67 LRDSRNLLVDFIWACSNSFSSPFVKSDQEFVYETEHFNGVGELLEILGSIINGFALPLKN 126
+ D N+ F S+ P++ DQ Y H G L
Sbjct: 449 IVDHYNIPKTF---DSDDLIPPYL--DQ---YFYSHI---------------GHHLKNIE 485
Query: 127 EHKLFLV--KVLLPLH--KVKCLSLYHAQLAYCVVQFLEKDPTLTEPVVKGLLKYWPRTC 182
+ + V L + K + H A+ + TL + L Y P C
Sbjct: 486 HPERMTLFRMVFLDFRFLEQK---IRHDSTAWNASGSIL--NTLQQ-----LKFYKPYIC 535
Query: 183 SQKEVMFLGEIEEILDVIEPTQFINIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYI 240
+ E +++ I F L + + S + + AL +
Sbjct: 536 DNDP-----KYERLVNAIL--DF------LPKIEENLICSKYTDLLRIALMAEDEAIF 580
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1,
phosphoinositide specificity, guanine exchan factor, RHO
GTPase, cytoskeleton, cell migration; 2.37A {Homo
sapiens}
Length = 220
Score = 30.3 bits (68), Expect = 0.77
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 22/92 (23%)
Query: 236 NNEYIMSLMEENNHVVMPIMFPA-------------LYRISKEHWNQTI-VALVYNVLKT 281
N E +S+ +E+ + ++FP Y++ + W +T+ VA+ +
Sbjct: 48 NVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPIEDVNR 107
Query: 282 ---FMEMNSRLFDELTANYKAERQNSPFGHAF 310
F ++ ++ F AF
Sbjct: 108 SHLRFT-----FRHRSSQDSKDKSEKIFALAF 134
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.0 bits (66), Expect = 3.3
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 11/50 (22%)
Query: 303 NSPFG-----------HAFSTSLAMPRDELAVAERALYFWNNEYIMSLME 341
N+P G + + +P L + ERA+ W +
Sbjct: 145 NTPEGACPECHGLGRVYTVTEDSMVPDPSLTIRERAVAAWPQAWGGQNQR 194
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 28.6 bits (63), Expect = 4.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 46 LRTSGFMNQFRIDLAHLLRHFLRDSRNLLVDFIWACSNSFSSPFVKSDQEFVYETEHFNG 105
L GF D +L+ FL S + + A + F+KS E +E F
Sbjct: 20 LDQLGFRWSVFWDEKKILKDFLIQSPSDMTALQ-ATAELDVIEFLKSSIELDWEI--FWN 76
Query: 106 VGELLEILG 114
+ L++L
Sbjct: 77 IA--LQLLD 83
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical
protein, structural genomics, PS protein structure
initiative; 1.80A {Bacteroides fragilis}
Length = 182
Score = 27.0 bits (59), Expect = 9.0
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 58 DLAHLLRHFLRDSRNLLVDFIWACSNSFSS 87
D+ + F + D + C +F
Sbjct: 122 DIKDFIFVFQLGLNETMNDSLAICQENFGL 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.416
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,056,325
Number of extensions: 351912
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 20
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)