BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13520
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HBC|A Chain A, Crystal Structure Of Choloylglycine Hydrolase From
           Bacteroides Thetaiotaomicron Vpi
          Length = 320

 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 6   RLSDFTARSSFSSATMPQPTQ-----PINLVMCESLSVPCAPVDIEEPALSKRRTDSYST 60
           R SD   R+SF    +PQ        P  L +  ++SVP      E+P +S  R  S S 
Sbjct: 205 RSSDRFVRASFYIHAIPQTADAKIAVPSVLSVXRNVSVPFGINTPEKPHISSTRWRSVSD 264

Query: 61  QPINLIMCESLSVP------CAPVDIEEPALSKRRTDSYSEINGGES 101
           Q   +   ES   P         +D    A  K+ + +  EI  G++
Sbjct: 265 QKNKVYYFESTLTPNLFWLDLKKIDFSPKAGVKKLSLTKGEIYAGDA 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,397,744
Number of Sequences: 62578
Number of extensions: 231955
Number of successful extensions: 352
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 2
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)