BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13520
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99KU0|VMP1_MOUSE Vacuole membrane protein 1 OS=Mus musculus GN=Vmp1 PE=2 SV=2
Length = 406
Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/132 (64%), Positives = 100/132 (75%), Gaps = 13/132 (9%)
Query: 105 AADWVPSLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL- 163
A+ SLWSI++KV++EA MWG GTA+GELPPYF++RAARLS +PDD + + L
Sbjct: 173 GAEGAISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLE 232
Query: 164 ------------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGAT 211
KL ++ LV KVGFFGILACASIPNPLFDLAGITCGHFL+PFWTFFGAT
Sbjct: 233 HAEAAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGAT 292
Query: 212 LIGKAVIKMSIQ 223
LIGKA+IKM IQ
Sbjct: 293 LIGKAIIKMHIQ 304
>sp|Q91ZQ0|VMP1_RAT Vacuole membrane protein 1 OS=Rattus norvegicus GN=Vmp1 PE=1 SV=1
Length = 406
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 98/126 (77%), Gaps = 13/126 (10%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL------- 163
SLWSI++KV++EA MWG GTA+GELPPYF++RAARLS +PDD + + L
Sbjct: 179 SLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAETAQ 238
Query: 164 ------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
KL ++ LV KVGFFGILACASIPNPLFDLAGITCGHFL+PFWTFFGATLIGKA+
Sbjct: 239 DFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAI 298
Query: 218 IKMSIQ 223
IKM IQ
Sbjct: 299 IKMHIQ 304
>sp|Q0VCK9|VMP1_BOVIN Vacuole membrane protein 1 OS=Bos taurus GN=VMP1 PE=2 SV=1
Length = 406
Score = 177 bits (448), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 98/126 (77%), Gaps = 13/126 (10%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL------- 163
SLWSI++KV++EA MWG GTA+GELPPYF++RAARLS +PDD + + L
Sbjct: 179 SLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAETAQ 238
Query: 164 ------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
KL ++ LV KVGFFGILACASIPNPLFDLAGITCGHFL+PFWTFFGATLIGKA+
Sbjct: 239 DFASRAKLAVQNLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAI 298
Query: 218 IKMSIQ 223
IKM IQ
Sbjct: 299 IKMHIQ 304
>sp|Q96GC9|VMP1_HUMAN Vacuole membrane protein 1 OS=Homo sapiens GN=VMP1 PE=1 SV=1
Length = 406
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 98/126 (77%), Gaps = 13/126 (10%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL------- 163
SLWSI++KV++EA MWG GTA+GELPPYF++RAARLS +PDD + + L
Sbjct: 179 SLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQ 238
Query: 164 ------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
KL ++ LV KVGFFGILACASIPNPLFDLAGITCGHFL+PFWTFFGATLIGKA+
Sbjct: 239 DFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAI 298
Query: 218 IKMSIQ 223
IKM IQ
Sbjct: 299 IKMHIQ 304
>sp|Q5R9K4|VMP1_PONAB Vacuole membrane protein 1 OS=Pongo abelii GN=VMP1 PE=2 SV=1
Length = 406
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 98/126 (77%), Gaps = 13/126 (10%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL------- 163
SLWSI++KV++EA MWG GTA+GELPPYF++RAARLS +PDD + + L
Sbjct: 179 SLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQ 238
Query: 164 ------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
KL ++ LV KVGFFGILACASIPNPLFDLAGITCGHFL+PFWTFFGATLIGKA+
Sbjct: 239 DFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAI 298
Query: 218 IKMSIQ 223
IKM IQ
Sbjct: 299 IKMHIQ 304
>sp|Q68EQ9|VMP1_XENTR Vacuole membrane protein 1 OS=Xenopus tropicalis GN=vmp1 PE=2 SV=1
Length = 406
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 98/126 (77%), Gaps = 13/126 (10%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL------- 163
SLW+I++KV+LEA MWGAGTA+GELPPYF++RAARLS ++ DD + + L
Sbjct: 179 SLWTIISKVRLEACMWGAGTAIGELPPYFMARAARLSGVETDDEEYAEFEEMLEHAQTAQ 238
Query: 164 ------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
KL ++ LV KVGF GILACASIPNPLFDLAGITCGHFL+PFWTFFGATLIGKA+
Sbjct: 239 DFATRAKLAVQNLVQKVGFLGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAI 298
Query: 218 IKMSIQ 223
IKM IQ
Sbjct: 299 IKMHIQ 304
>sp|Q6INE8|VMP1_XENLA Vacuole membrane protein 1 OS=Xenopus laevis GN=vmp1 PE=2 SV=1
Length = 406
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 98/126 (77%), Gaps = 13/126 (10%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKL------- 163
SLW+I++KV+LEA MWGAGTA+GELPPYF++RAARLS ++ DD + + L
Sbjct: 179 SLWTIISKVRLEACMWGAGTAIGELPPYFMARAARLSGVETDDEEYAEFEEMLEHAQTAQ 238
Query: 164 ------KLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
KL ++ LV KVGF GILACASIPNPLFDLAGITCGHFL+PFWTFFGATLIGKA+
Sbjct: 239 DFATRAKLTVQNLVQKVGFLGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAI 298
Query: 218 IKMSIQ 223
IKM IQ
Sbjct: 299 IKMHIQ 304
>sp|Q6NYY9|VMP1_DANRE Vacuole membrane protein 1 OS=Danio rerio GN=vmp1 PE=2 SV=1
Length = 406
Score = 171 bits (433), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 95/128 (74%), Gaps = 17/128 (13%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLS---------------LLDPDDVD 155
SLW+IM+KV+LEA MWGAGTA+GELPPYF++RAAR+S L
Sbjct: 179 SLWTIMSKVRLEACMWGAGTAIGELPPYFMARAARMSGADPDDEDYEEFEEMLEHSQSAQ 238
Query: 156 DLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGK 215
D + KL ++ +V KVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGK
Sbjct: 239 DFA--SRAKLAVQNMVQKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGK 296
Query: 216 AVIKMSIQ 223
A+IKM IQ
Sbjct: 297 AIIKMHIQ 304
>sp|Q9XWU8|VMP1_CAEEL Ectopic P granules protein 3 OS=Caenorhabditis elegans GN=epg-3
PE=2 SV=2
Length = 458
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 100/142 (70%), Gaps = 18/142 (12%)
Query: 100 ESPGVAADWVPSLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVD---- 155
+ P + + W I+ KV++E+++WGAGTALGELPPYF++RAAR+S +PDD +
Sbjct: 178 QCPSTKSSIAVTFWQIVAKVRVESLLWGAGTALGELPPYFMARAARISGQEPDDEEYREF 237
Query: 156 --------------DLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFL 201
L++V++ K +E ++++GF GIL ASIPNPLFDLAGITCGHFL
Sbjct: 238 LELMNADKESDADQKLSIVERAKSWVEHNIHRLGFPGILLFASIPNPLFDLAGITCGHFL 297
Query: 202 IPFWTFFGATLIGKAVIKMSIQ 223
+PFW+FFGATLIGKA++KM +Q
Sbjct: 298 VPFWSFFGATLIGKALVKMHVQ 319
>sp|Q54NL4|VMP1_DICDI Vacuole membrane protein 1 homolog OS=Dictyostelium discoideum
GN=vmp1 PE=3 SV=1
Length = 403
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 86/130 (66%), Gaps = 16/130 (12%)
Query: 111 SLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLL----------------DPDDV 154
S W I+ KV+ A+ WGAGTA+GELPPYF++R ARL L D D
Sbjct: 165 SFWMILQKVQWAALFWGAGTAIGELPPYFVARTARLKGLKLEQEKKLKEQQEKPIDEKDQ 224
Query: 155 DDLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIG 214
L+++L K+ L+ +GFFGILA ASIPNPLFDLAGITCGHFL+PFW FFGAT IG
Sbjct: 225 PKKGLLERLSEKVPALIGNLGFFGILAFASIPNPLFDLAGITCGHFLVPFWKFFGATFIG 284
Query: 215 KAVIKMSIQG 224
KAV+K IQ
Sbjct: 285 KAVVKAHIQA 294
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 34.7 bits (78), Expect = 0.54, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 22 PQPTQPINLVMCESLSVP--CAPVDIEEPALSKRRTDSYSTQPINLIMCESLSVPCAPVD 79
P T +N LS+P D+++P + T +P + PC+P +
Sbjct: 1094 PDLTPGLNPTAGLDLSLPSDVHSSDLQDPKTMQTTTPGTRPEPPRTFL-PGEPPPCSPRN 1152
Query: 80 IEEPALSKRRTDSYSE-------INGGESPGVAADWVPSLWSIMNKVKLEAMMWGAGT 130
+EEP L R D+ + + GG PG A D PS + +K ++ G GT
Sbjct: 1153 LEEPGLLSRARDATQDLANLPPPVEGGLPPGKAED--PSPLEGLQALKFGDLLEGGGT 1208
>sp|A3QAK2|GLNE_SHELP Glutamate-ammonia-ligase adenylyltransferase OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=glnE PE=3 SV=1
Length = 956
Score = 32.7 bits (73), Expect = 2.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 82 EPALSKRRTDSYSEINGGESPGVAADWVPSLWSIMNKVKLEAMMWGAGTALGELPPYFLS 141
E A++K + G ES VA W LWS+++ EA++ G EL P S
Sbjct: 432 ESAMAKIHRYFKETVGGQESDEVAEQWTAQLWSLVDDEDAEALLKEHGVEESELWPALKS 491
>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp.
japonica GN=Os01g0911100 PE=2 SV=2
Length = 666
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 18 SATMPQPTQPINLVMCESLSVP--CAPVDIEEPALSKRRTDSYSTQPIN 64
+A +P P P L S S P AP D EP+ ++ RT++Y T +N
Sbjct: 49 AAFLPDPNLPRRLPFPSSSSTPTAAAPPDSGEPSRARARTETYRTGDMN 97
>sp|C5BDQ8|ARNT_EDWI9 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase OS=Edwardsiella ictaluri (strain 93-146)
GN=arnT PE=3 SV=1
Length = 552
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 131 ALGELPPYFLSRAARLSLLDPDDVDDLTLVDKLKLKIETLVN-KVGFFGILACASIPNPL 189
A G+LP Y L A L++L V LT + L+I L+N VG G+ A + P
Sbjct: 309 AKGKLPTYILPCFAPLAILMAGYVQRLTGENGKALRINGLINLLVGLGGMAAILLVLAPW 368
Query: 190 FDLAGITCGHFLIPFWTFFGATLIGKAVI 218
GIT GH FGA IGK ++
Sbjct: 369 ----GIT-GH------PLFGAHEIGKVIL 386
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,249,407
Number of Sequences: 539616
Number of extensions: 3734775
Number of successful extensions: 7599
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7576
Number of HSP's gapped (non-prelim): 19
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)