Query psy13520
Match_columns 238
No_of_seqs 145 out of 163
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 21:28:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1109|consensus 100.0 2E-58 4.3E-63 432.7 9.5 152 68-228 166-331 (440)
2 PF09335 SNARE_assoc: SNARE as 98.8 1.2E-08 2.7E-13 78.4 6.3 96 118-217 15-112 (123)
3 COG1238 Predicted membrane pro 98.6 7.6E-08 1.6E-12 82.2 5.5 96 117-217 49-144 (161)
4 KOG0985|consensus 97.9 4.1E-06 8.9E-11 88.4 1.3 57 27-87 1597-1653(1666)
5 COG0398 Uncharacterized conser 97.8 6E-05 1.3E-09 66.9 6.5 94 117-217 74-174 (223)
6 KOG1109|consensus 97.5 7E-05 1.5E-09 72.3 3.0 76 108-183 7-116 (440)
7 PRK10847 hypothetical protein; 97.2 0.00048 1E-08 60.3 4.8 87 127-217 79-166 (219)
8 COG0586 DedA Uncharacterized m 96.9 0.0014 3E-08 57.2 5.1 86 126-217 63-152 (208)
9 PF06695 Sm_multidrug_ex: Puta 91.2 0.46 9.9E-06 38.6 5.1 51 167-217 65-117 (121)
10 COG2426 Predicted membrane pro 60.9 5.6 0.00012 34.0 1.8 62 156-217 64-127 (142)
11 PTZ00101 rhomboid-1 protease; 42.7 7.8 0.00017 36.0 -0.1 11 1-11 1-11 (278)
12 PF05128 DUF697: Domain of unk 41.3 36 0.00077 28.4 3.6 40 157-196 12-51 (162)
13 PF10491 Nrf1_DNA-bind: NLS-bi 26.9 52 0.0011 30.0 2.5 40 157-196 35-76 (214)
14 PF07911 DUF1677: Protein of u 26.4 50 0.0011 26.5 2.0 24 14-37 66-89 (91)
15 KOG3140|consensus 24.3 1.4E+02 0.003 28.1 4.8 83 128-216 137-221 (275)
16 PF05916 Sld5: GINS complex pr 20.0 1.9E+02 0.0041 21.1 4.0 17 131-147 45-61 (108)
No 1
>KOG1109|consensus
Probab=100.00 E-value=2e-58 Score=432.70 Aligned_cols=152 Identities=58% Similarity=1.014 Sum_probs=142.2
Q ss_pred ecccccccCCCCCCCCCCCcccCCCcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHhc
Q psy13520 68 CESLSVPCAPVDIEEPALSKRRTDSYSEINGGESPGVAADWVPSLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLS 147 (238)
Q Consensus 68 ~t~qAmlCgspdF~sPPYp~~r~~sw~~~~Cp~~~~~~~~~~vt~~~i~~kV~~ea~lWG~GTALGELppYf~araarls 147 (238)
.++++|+|+++||+.||||++ ++||+.... .+.+.+|+|++||+.||++||+|||+||||||||+||||++
T Consensus 166 vT~aayec~s~nfp~ppYP~~-------i~Cpet~~s--~~v~~~wsi~~kVrieailwg~gtalgElppyFmaraarls 236 (440)
T KOG1109|consen 166 VTLAAYECNSVNFPQPPYPDD-------IICPETEES--RGVPGLWSIFSKVRIEAILWGAGTALGELPPYFMARAARLS 236 (440)
T ss_pred ccchhhhhcccCCCCCCCCCC-------CCCCCchhc--ccCccHHHHHHHHHhhhhhhccccccccCchHHHHHHHHhc
Confidence 588999999999999999988 999998543 24556999999999999999999999999999999999999
Q ss_pred CCCCCCchh--------------hhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhhhccccchhhHHHHHHHhh
Q psy13520 148 LLDPDDVDD--------------LTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLI 213 (238)
Q Consensus 148 g~~~d~~e~--------------~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi~cGhFlvPFw~Ff~AtlI 213 (238)
|.++||||+ .+..+|+|.|+++.+||+||+|||+|||||||+||||||+||||++|||+|||||||
T Consensus 237 g~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfdlaGitcghflvpfw~ffGaTLi 316 (440)
T KOG1109|consen 237 GVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFDLAGITCGHFLVPFWTFFGATLI 316 (440)
T ss_pred CCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchhhcccccccccchHHHHhhHHHH
Confidence 999999765 457899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhheeeceeEEEe
Q psy13520 214 GKAVIKMSIQGNKWV 228 (238)
Q Consensus 214 GKaiiK~~iQ~~~~v 228 (238)
|||+||||||++|..
T Consensus 317 gKaiikmhIq~~fVi 331 (440)
T KOG1109|consen 317 GKAIIKMHIQKIFVI 331 (440)
T ss_pred HHHHHHHhhheEEEE
Confidence 999999999999853
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=98.79 E-value=1.2e-08 Score=78.45 Aligned_cols=96 Identities=28% Similarity=0.380 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhhccCCcHHHHHHHHHh--cCCCCCCchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhh
Q psy13520 118 KVKLEAMMWGAGTALGELPPYFLSRAARL--SLLDPDDVDDLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGI 195 (238)
Q Consensus 118 kV~~ea~lWG~GTALGELppYf~araarl--sg~~~d~~e~~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi 195 (238)
....-.++..+|+.+|.+..|+++|-... ..++. ...+..++. .+.++.+||+|++.++++..+|-..+|+..+
T Consensus 15 g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~g~~~l~~~~~~P~~P~~~~~~ 90 (123)
T PF09335_consen 15 GPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKL---RKKKRIKRI-ERIERWFQKYGFWVLFLSRFIPGLPFDVVNY 90 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh---cchHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHccHHHHHH
Confidence 45556677789999999999999985432 11000 012223332 3467788999999999998888666999999
Q ss_pred hccccchhhHHHHHHHhhhhhh
Q psy13520 196 TCGHFLIPFWTFFGATLIGKAV 217 (238)
Q Consensus 196 ~cGhFlvPFw~Ff~AtlIGKai 217 (238)
+||...||+|+|+.++++|+.+
T Consensus 91 ~ag~~~~~~~~f~~~~~~g~~~ 112 (123)
T PF09335_consen 91 LAGITRMPFRRFFLASLIGKLP 112 (123)
T ss_pred HHHccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 3
>COG1238 Predicted membrane protein [Function unknown]
Probab=98.58 E-value=7.6e-08 Score=82.20 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhhccCCcHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhhh
Q psy13520 117 NKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGIT 196 (238)
Q Consensus 117 ~kV~~ea~lWG~GTALGELppYf~araarlsg~~~d~~e~~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi~ 196 (238)
.++...+.+-.+|+.+|.+..|++||-+.-.-.+. ....-.++.+...++..+|||.|.+++..--|=| |+-+++
T Consensus 49 ~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~ig--d~~t~~ 123 (161)
T COG1238 49 LNAWILALVATLGSVLGGLVNYALGRFLPEFIARR---WFPGSEEALEKLQEKWYRRYGVWTLLLSWLPPIG--DVLTLL 123 (161)
T ss_pred CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH---hhcchHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHHHHH
Confidence 56778889999999999999999998443332221 0000112333344458999999999987654445 999999
Q ss_pred ccccchhhHHHHHHHhhhhhh
Q psy13520 197 CGHFLIPFWTFFGATLIGKAV 217 (238)
Q Consensus 197 cGhFlvPFw~Ff~AtlIGKai 217 (238)
||.+.+|||+|.++.+|||+.
T Consensus 124 aG~~~~~~~~f~~~~~igk~~ 144 (161)
T COG1238 124 AGWLRLNFLPFILLVFLGKAA 144 (161)
T ss_pred HHHHHccHHHHHHHHHHHHHH
Confidence 999999999999999999995
No 4
>KOG0985|consensus
Probab=97.88 E-value=4.1e-06 Score=88.37 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHHhhccCCCCcccccccchhhhcccccccCCcceeeecccccccCCCCCCCCCCCc
Q psy13520 27 PINLVMCESLSVPCAPVDIEEPALSKRRTDSYSTQPINLIMCESLSVPCAPVDIEEPALSK 87 (238)
Q Consensus 27 ~liqVmREy~s~~~~kVDkLe~ses~Rk~ee~~~ep~pLm~~t~qAmlCgspdF~sPPYp~ 87 (238)
-+|||||||++ |||||+..|+.|++|++++|.++.|.+++|.+...++.++.||.+.
T Consensus 1597 y~iq~~~ey~~----kv~kl~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~a~~~~p~~~ 1653 (1666)
T KOG0985|consen 1597 YFIQVMREYLS----KVDKLEKDEAQREKEEKEQEEKNGMSMQGQLLMLLGLAMPAPPMPF 1653 (1666)
T ss_pred HHHHHHHHHHH----HHHHHhhhhhcchhhhhhhhhccccccCcchHHhcCcCCCCCCCCC
Confidence 47999999999 9999999999999999999999999999999999998888876433
No 5
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=6e-05 Score=66.93 Aligned_cols=94 Identities=30% Similarity=0.333 Sum_probs=69.1
Q ss_pred HHHHHHHHHHH-----hhhhccCCcHHHHHHHHHhcCCCCCCchhhhHHH--HHHHHHHHHHHhhhhhhhhhhhcCCCch
Q psy13520 117 NKVKLEAMMWG-----AGTALGELPPYFLSRAARLSLLDPDDVDDLTLVD--KLKLKIETLVNKVGFFGILACASIPNPL 189 (238)
Q Consensus 117 ~kV~~ea~lWG-----~GTALGELppYf~araarlsg~~~d~~e~~~~~~--~~K~~~~~~~~k~Gf~~Il~~asiPNpl 189 (238)
..+.+...+|| +|+-+|....|+.+| ..|++ ..+++.. +....+.+.++|.|++.++++--+|=--
T Consensus 74 ~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R---~~gr~----~~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P 146 (223)
T COG0398 74 AGGLLFGPFLGFLYSLIGATAGSTLAFLLAR---YLGRD----WVLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFP 146 (223)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHH----HHHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCC
Confidence 44555566666 688999999999997 22211 0000101 1123456669999999999998777666
Q ss_pred hhhhhhhccccchhhHHHHHHHhhhhhh
Q psy13520 190 FDLAGITCGHFLIPFWTFFGATLIGKAV 217 (238)
Q Consensus 190 FDLaGi~cGhFlvPFw~Ff~AtlIGKai 217 (238)
||+....||...|++|.|+.||++||.+
T Consensus 147 ~~lvn~aaglt~is~~~f~ias~lG~~P 174 (223)
T COG0398 147 FDLVNYAAGLTGISFRDFAIATLLGKLP 174 (223)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHhccc
Confidence 9999999999999999999999999974
No 6
>KOG1109|consensus
Probab=97.48 E-value=7e-05 Score=72.31 Aligned_cols=76 Identities=33% Similarity=0.442 Sum_probs=60.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHhcCCCC-------CCch---------------h---------
Q psy13520 108 WVPSLWSIMNKVKLEAMMWGAGTALGELPPYFLSRAARLSLLDP-------DDVD---------------D--------- 156 (238)
Q Consensus 108 ~~vt~~~i~~kV~~ea~lWG~GTALGELppYf~araarlsg~~~-------d~~e---------------~--------- 156 (238)
....+.+|+.+|++++.+||.||+.||+|+||..||++....-. ++.| +
T Consensus 7 ~~k~~~~~~~~~~~s~~l~g~~~~~~~~~~~~~~rAG~~t~~~~~~~~~~~~R~er~~~vlwr~p~~tl~y~~~ei~~~~ 86 (440)
T KOG1109|consen 7 SRKPLTSILPQVQLSKILWGIGTAEGELPMYFLSRAGLKTDPSSIFLQKLRERLERCILVLWRQPLITLEYFDLEIFELL 86 (440)
T ss_pred ccccccccCcchhhHHHHhcccccccCCCcccccccccCCCcchhhHHHHHhhhhhheEEEecCcchhHHHhhHHHHHHH
Confidence 46788899999999999999999999999999999987654211 0011 1
Q ss_pred ---hhHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy13520 157 ---LTLVDKLKLKIETLVNKVGFFGILACA 183 (238)
Q Consensus 157 ---~~~~~~~K~~~~~~~~k~Gf~~Il~~a 183 (238)
...+.+.|+|+..+.+..++|.++...
T Consensus 87 ~~wst~Ll~~k~wLlt~~~~l~~f~~ly~~ 116 (440)
T KOG1109|consen 87 REWSTKLLAVKRWLLTFSQLLNVFTVLYLT 116 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 224668899999999999999998873
No 7
>PRK10847 hypothetical protein; Provisional
Probab=97.21 E-value=0.00048 Score=60.33 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=61.3
Q ss_pred HhhhhccCCcHHHHHHHHHhcCCCCCCchhhh-HHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhhhccccchhhH
Q psy13520 127 GAGTALGELPPYFLSRAARLSLLDPDDVDDLT-LVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFW 205 (238)
Q Consensus 127 G~GTALGELppYf~araarlsg~~~d~~e~~~-~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi~cGhFlvPFw 205 (238)
-+|..+|..-.|++||- .|++.-+..... +-++--.+.+++++|||.+.|+++--+|= .=++..+.||...||++
T Consensus 79 ~~Ga~lG~~i~Y~lGr~---~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~-~R~~~~~~aG~~~m~~~ 154 (219)
T PRK10847 79 LIAAIVGDAVNYTIGRL---FGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPI-VRTFAPFVAGMGHMSYR 154 (219)
T ss_pred HHHHHHHHHHHHHHHHH---hCHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccc-hHhHHHHHhHhcCCChH
Confidence 38899999999999983 222100000000 00111145677899999999999887772 22778899999999999
Q ss_pred HHHHHHhhhhhh
Q psy13520 206 TFFGATLIGKAV 217 (238)
Q Consensus 206 ~Ff~AtlIGKai 217 (238)
+|+.++++|..+
T Consensus 155 ~F~~~~~lg~~~ 166 (219)
T PRK10847 155 HFAAYNVIGALL 166 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 8
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=96.92 E-value=0.0014 Score=57.17 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=63.0
Q ss_pred HHhhhhccCCcHHHHHHHH--HhcCCCCCCc--hhhhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhhhccccc
Q psy13520 126 WGAGTALGELPPYFLSRAA--RLSLLDPDDV--DDLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFL 201 (238)
Q Consensus 126 WG~GTALGELppYf~araa--rlsg~~~d~~--e~~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi~cGhFl 201 (238)
-.+|..+|...-|+.||-. ++.- +..+. -..+.+ ++.+++++|||.+.|+++=-+| .+=-+..+.+|.-.
T Consensus 63 ~~lga~lGd~i~Y~iGr~~G~~~l~-~~~~~~~~~~~~l----~~a~~~f~r~G~~~vf~~RFip-~vRt~ip~~AG~~~ 136 (208)
T COG0586 63 ATLGALLGDLISYWIGRRFGRKLLR-KLWSYRLLKRKKL----DKAELLFERHGLFAIFLGRFIP-GVRTLVPIVAGMSK 136 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHH-hhhhhccCCHHHH----HHHHHHHHHcCchhhhhhcccc-hhHhhhhHhhhhcc
Confidence 3578999999999999722 1111 11110 012233 4457779999999999998888 46667889999999
Q ss_pred hhhHHHHHHHhhhhhh
Q psy13520 202 IPFWTFFGATLIGKAV 217 (238)
Q Consensus 202 vPFw~Ff~AtlIGKai 217 (238)
||+++|..++++|-.+
T Consensus 137 m~~~~F~~~n~~ga~i 152 (208)
T COG0586 137 MPLRRFLLYNILGALL 152 (208)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999999764
No 9
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=91.22 E-value=0.46 Score=38.63 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhhhhhhhcCCCch--hhhhhhhccccchhhHHHHHHHhhhhhh
Q psy13520 167 IETLVNKVGFFGILACASIPNPL--FDLAGITCGHFLIPFWTFFGATLIGKAV 217 (238)
Q Consensus 167 ~~~~~~k~Gf~~Il~~asiPNpl--FDLaGi~cGhFlvPFw~Ff~AtlIGKai 217 (238)
-.+.++|||++|+.++.++|=|. =-.+.+.+-.+.|++++=|.|.++|=.+
T Consensus 65 ~~~~i~kyg~~GL~lFVaIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~i 117 (121)
T PF06695_consen 65 KSKKIEKYGFWGLALFVAIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLI 117 (121)
T ss_pred HHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999331 1345667778899999999999998654
No 10
>COG2426 Predicted membrane protein [Function unknown]
Probab=60.92 E-value=5.6 Score=33.98 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhh--hhhhccccchhhHHHHHHHhhhhhh
Q psy13520 156 DLTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDL--AGITCGHFLIPFWTFFGATLIGKAV 217 (238)
Q Consensus 156 ~~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDL--aGi~cGhFlvPFw~Ff~AtlIGKai 217 (238)
+..+++|..++-...++||||.|..++-+||-|-=-. ..+.+--+.+++-+=|.+..+|-.+
T Consensus 64 Y~~~~~r~~rka~~yVER~G~iGL~iFvAIPLP~TG~wtgaLaA~llgI~~r~a~~al~~Gg~i 127 (142)
T COG2426 64 YDWLVNRTRRKAKGYVERYGFIGLIIFVAIPLPGTGAWTGALAAYLLGIRERFAFAALSAGGLI 127 (142)
T ss_pred HHHHHHHHHHhccCcHhhhhhhhhhheeeccCCCccHhHHHHHHHHHcCchHHHHHHHHHhhHH
Confidence 3567778877777889999999999999999664211 1223334567777777777777653
No 11
>PTZ00101 rhomboid-1 protease; Provisional
Probab=42.66 E-value=7.8 Score=35.98 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=10.4
Q ss_pred Ccccccccccc
Q psy13520 1 MANIRRLSDFT 11 (238)
Q Consensus 1 ~~~~~~~~~~~ 11 (238)
|+|||+|||+.
T Consensus 1 ~~~~~~~~~~~ 11 (278)
T PTZ00101 1 MSNIHTLAEYR 11 (278)
T ss_pred CcchhhHHHHH
Confidence 89999999997
No 12
>PF05128 DUF697: Domain of unknown function (DUF697) ; InterPro: IPR021147 Proteins in this entry have no known function.
Probab=41.26 E-value=36 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhhh
Q psy13520 157 LTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGIT 196 (238)
Q Consensus 157 ~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi~ 196 (238)
+..++..+..-++++++|-..+=...+..|+|..|+..++
T Consensus 12 ~~~~~~~~~~A~~~I~~~a~~~A~~~a~~PiP~~D~~~~~ 51 (162)
T PF05128_consen 12 QELLEQRDQRANRIIKRYAWLAAGAVAASPIPFLDAAALL 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4456777788889999998766555666799999987554
No 13
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=26.87 E-value=52 Score=30.03 Aligned_cols=40 Identities=30% Similarity=0.640 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhc--CCCchhhhhhhh
Q psy13520 157 LTLVDKLKLKIETLVNKVGFFGILACAS--IPNPLFDLAGIT 196 (238)
Q Consensus 157 ~~~~~~~K~~~~~~~~k~Gf~~Il~~as--iPNplFDLaGi~ 196 (238)
..++.+++.-+..+.-|+|=-+|++|++ =|||.|.+.|-.
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~ 76 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAA 76 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecch
Confidence 4578888888899999999999999976 689999987743
No 14
>PF07911 DUF1677: Protein of unknown function (DUF1677); InterPro: IPR012876 The sequences found in this family are all derived from hypothetical plant proteins of unknown function. The region features a number of highly conserved cysteine residues.
Probab=26.35 E-value=50 Score=26.45 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.6
Q ss_pred cccccCCCCCCChHHHHHHHhhcc
Q psy13520 14 SSFSSATMPQPTQPINLVMCESLS 37 (238)
Q Consensus 14 ~~~~~~~~~~~~~~liqVmREy~s 37 (238)
..|.+.+-|.|+..+++.||+.|-
T Consensus 66 ~~f~~~~~~np~~~l~~amr~ilr 89 (91)
T PF07911_consen 66 RKFNSSTRPNPALSLASAMRQILR 89 (91)
T ss_pred HHcCCCCCCChhHHHHHHHHHHHh
Confidence 357788888999999999999875
No 15
>KOG3140|consensus
Probab=24.34 E-value=1.4e+02 Score=28.06 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=48.5
Q ss_pred hhhhccCCcHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-HHHHHHhhhhhhhhhhhc-CCCchhhhhhhhccccchhhH
Q psy13520 128 AGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKLKLK-IETLVNKVGFFGILACAS-IPNPLFDLAGITCGHFLIPFW 205 (238)
Q Consensus 128 ~GTALGELppYf~araarlsg~~~d~~e~~~~~~~~K~~-~~~~~~k~Gf~~Il~~as-iPNplFDLaGi~cGhFlvPFw 205 (238)
.++++|..+-|+.++ +-|+.. ...-+-++.+.| +.--.++.+.+..++... -|=.-.=+.++..+..-||+-
T Consensus 137 ~~~~~ga~~cy~lS~---~f~r~~---v~~l~p~~~~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~ 210 (275)
T KOG3140|consen 137 LLSTLGASLCYLLSK---LFGRPL---VLKLFPDKIAFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLR 210 (275)
T ss_pred eccchhHHHHHHHHH---HHhHHH---HHHHhHHHHHHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchH
Confidence 357788888888885 222210 000111122111 222334556555444433 243335678999999999999
Q ss_pred HHHHHHhhhhh
Q psy13520 206 TFFGATLIGKA 216 (238)
Q Consensus 206 ~Ff~AtlIGKa 216 (238)
-||.++++|=+
T Consensus 211 ~f~~~~~~gl~ 221 (275)
T KOG3140|consen 211 IFFIGTFKGLI 221 (275)
T ss_pred HHHHHHHHhcC
Confidence 99999999754
No 16
>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.
Probab=20.03 E-value=1.9e+02 Score=21.08 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=14.5
Q ss_pred hccCCcHHHHHHHHHhc
Q psy13520 131 ALGELPPYFLSRAARLS 147 (238)
Q Consensus 131 ALGELppYf~araarls 147 (238)
.+..||+||.-.+..+.
T Consensus 45 ~l~~l~~~f~~~~~~l~ 61 (108)
T PF05916_consen 45 DLSKLPPYFYELGEMLL 61 (108)
T ss_dssp SCCTSSTTHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHH
Confidence 78899999998877766
Done!