Query psy13520
Match_columns 238
No_of_seqs 145 out of 163
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:29:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvg_A Clathrin heavy chain 1; 97.2 1.7E-05 5.7E-10 78.2 -3.1 62 15-84 539-600 (624)
2 3qil_A Clathrin heavy chain 1; 97.0 0.00013 4.5E-09 59.5 0.8 37 13-57 89-125 (125)
3 2lur_A Kalata; beta hairpin, p 23.6 20 0.00068 22.1 0.3 6 196-201 21-26 (29)
4 3fbi_A Mediator of RNA polymer 10.3 46 0.0016 25.0 -0.6 14 203-216 19-32 (84)
5 2lbg_A Major prion protein; co 10.0 70 0.0024 19.6 0.3 18 126-143 7-24 (27)
6 4aj5_1 SKA3, spindle and kinet 9.8 1.6E+02 0.0054 23.0 2.3 6 170-175 96-101 (101)
7 3j27_B Matrix protein, small e 9.5 5.4E+02 0.018 18.6 5.0 42 157-211 26-67 (75)
8 3ro3_B Minsc, peptide of prote 8.1 2.1E+02 0.0071 16.7 1.8 11 160-170 7-17 (22)
9 2jx3_A Protein DEK; alpha heli 7.6 74 0.0025 25.3 -0.4 11 127-137 6-16 (131)
10 2v0p_A TAP42, type 2A phosphat 7.5 3.8E+02 0.013 22.7 4.0 46 135-180 74-124 (234)
No 1
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.23 E-value=1.7e-05 Score=78.15 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=34.7
Q ss_pred ccccCCCCCCChHHHHHHHhhccCCCCcccccccchhhhcccccccCCcceeeecccccccCCCCCCCCC
Q psy13520 15 SFSSATMPQPTQPINLVMCESLSVPCAPVDIEEPALSKRRTDSYSTQPINLIMCESLSVPCAPVDIEEPA 84 (238)
Q Consensus 15 ~~~~~~~~~~~~~liqVmREy~s~~~~kVDkLe~ses~Rk~ee~~~ep~pLm~~t~qAmlCgspdF~sPP 84 (238)
....-+||- +|||||||++ |||+|+..+++|++++..++++|++.+.+++|.+++|..+.||
T Consensus 539 ~l~D~~mPY----~Iq~~re~~~----kv~~L~~~~~~r~~~~~~~~~~~~~~~~~~lm~~~gp~~~~p~ 600 (624)
T 3lvg_A 539 NIMDFAMPY----FIQVMKEYLT----KVDKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPP 600 (624)
T ss_dssp CSSSCCCCS----STTTTTTHHH----HHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred cccccccch----HHHHHHHHHH----HHHHHHHHHHHHHhhhhccccCcccCCCccchhhcCCCCCCCC
Confidence 344446763 6999999999 9999999999999888888888887777789999998876553
No 2
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=97.03 E-value=0.00013 Score=59.47 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=30.7
Q ss_pred ccccccCCCCCCChHHHHHHHhhccCCCCcccccccchhhhcccc
Q psy13520 13 RSSFSSATMPQPTQPINLVMCESLSVPCAPVDIEEPALSKRRTDS 57 (238)
Q Consensus 13 ~~~~~~~~~~~~~~~liqVmREy~s~~~~kVDkLe~ses~Rk~ee 57 (238)
|.....-+|| .+|||||||++ |||+|+.++++|++||
T Consensus 89 r~~l~Df~mP----Y~Iqv~re~~~----kv~~L~~~~~~r~~~~ 125 (125)
T 3qil_A 89 RHNIMDFAMP----YFIQVMKEYLT----KVDKLDASESLRKEEE 125 (125)
T ss_dssp SSSCCCCCCC----SHHHHHHHHHH----HHHHHHHHTTTTTTTC
T ss_pred Hhccccccch----hHHHHHHHHHH----HHHHHHHHHHHhhhcC
Confidence 3444445676 58999999999 9999999999999886
No 3
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=23.61 E-value=20 Score=22.09 Aligned_cols=6 Identities=67% Similarity=1.602 Sum_probs=5.2
Q ss_pred hccccc
Q psy13520 196 TCGHFL 201 (238)
Q Consensus 196 ~cGhFl 201 (238)
.||||+
T Consensus 21 vcghfr 26 (29)
T 2lur_A 21 VCGHFR 26 (29)
T ss_dssp EEECSS
T ss_pred ccceee
Confidence 899996
No 4
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=10.33 E-value=46 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=10.0
Q ss_pred hhHHHHHHHhhhhh
Q psy13520 203 PFWTFFGATLIGKA 216 (238)
Q Consensus 203 PFw~Ff~AtlIGKa 216 (238)
|||+||-.-=|-|.
T Consensus 19 Pf~K~FT~eNl~kl 32 (84)
T 3fbi_A 19 PYVKFFTQSNLEKL 32 (84)
T ss_dssp GGGGGCCHHHHHHH
T ss_pred chhhhcCHHHHHHH
Confidence 79999976655553
No 5
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=10.00 E-value=70 Score=19.58 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.1
Q ss_pred HHhhhhccCCcHHHHHHH
Q psy13520 126 WGAGTALGELPPYFLSRA 143 (238)
Q Consensus 126 WG~GTALGELppYf~ara 143 (238)
.++|.++|.|-.|+++.+
T Consensus 7 ~AAGaVvGglGgy~lg~~ 24 (27)
T 2lbg_A 7 AAAGAVVGGLGGYMLGSA 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHH
Confidence 467889999999999876
No 6
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=9.77 E-value=1.6e+02 Score=22.99 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.8
Q ss_pred HHHhhh
Q psy13520 170 LVNKVG 175 (238)
Q Consensus 170 ~~~k~G 175 (238)
++||||
T Consensus 96 ~fqKYG 101 (101)
T 4aj5_1 96 YFQKYG 101 (101)
T ss_dssp HHHHC-
T ss_pred HHHHcC
Confidence 555555
No 7
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=9.46 E-value=5.4e+02 Score=18.62 Aligned_cols=42 Identities=17% Similarity=0.050 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhcCCCchhhhhhhhccccchhhHHHHHHH
Q psy13520 157 LTLVDKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGAT 211 (238)
Q Consensus 157 ~~~~~~~K~~~~~~~~k~Gf~~Il~~asiPNplFDLaGi~cGhFlvPFw~Ff~At 211 (238)
.+.++|++.|+ =|.-.|++++++ .||+.|-...--.-|+...
T Consensus 26 ~~~l~rvE~Wi----lrNp~~al~~~~---------~~w~lG~~~~Qrvi~iil~ 67 (75)
T 3j27_B 26 WKHAQRIETWI----LRHPGFTIMAAI---------LAYTIGTTHFQRALIFILL 67 (75)
T ss_dssp HHHHHHHHHHH----HHCCTHHHHHHH---------HHHHSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHChHHHHHHHH---------HHHHHcCChHHHHHHHHHH
Confidence 56677776664 343344443332 3677776666555554433
No 8
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=8.06 E-value=2.1e+02 Score=16.65 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q psy13520 160 VDKLKLKIETL 170 (238)
Q Consensus 160 ~~~~K~~~~~~ 170 (238)
++.+++||+++
T Consensus 7 vDSV~rWmeDL 17 (22)
T 3ro3_B 7 VDSVQRWMEDL 17 (26)
T ss_pred hHHHHHHHHHH
Confidence 46778888876
No 9
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=7.55 E-value=74 Score=25.33 Aligned_cols=11 Identities=36% Similarity=0.589 Sum_probs=9.9
Q ss_pred HhhhhccCCcH
Q psy13520 127 GAGTALGELPP 137 (238)
Q Consensus 127 G~GTALGELpp 137 (238)
|-||+||++|.
T Consensus 6 G~Gt~L~dIp~ 16 (131)
T 2jx3_A 6 GKGQKLCEIER 16 (131)
T ss_dssp SCTTCTTTCHH
T ss_pred CCCccccccHH
Confidence 78999999995
No 10
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=7.52 E-value=3.8e+02 Score=22.69 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=29.5
Q ss_pred CcHHHHHHH-HHhcCCCCC----CchhhhHHHHHHHHHHHHHHhhhhhhhh
Q psy13520 135 LPPYFLSRA-ARLSLLDPD----DVDDLTLVDKLKLKIETLVNKVGFFGIL 180 (238)
Q Consensus 135 LppYf~ara-arlsg~~~d----~~e~~~~~~~~K~~~~~~~~k~Gf~~Il 180 (238)
|.||++|.. .|..+..+. -.+....+++++.+..++++++--++|+
T Consensus 74 lvpy~Lg~L~~k~~~~~~~~~~~~~~R~~~L~~A~~~~~~FL~~l~~y~ll 124 (234)
T 2v0p_A 74 AVDYYLGLLISRRQSNDSDVAQRQSMKLIYLKKSVESFINFLTLLQDYKLL 124 (234)
T ss_dssp GHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 347888864 233221000 0345678899999999999988887774
Done!