Query psy13520
Match_columns 238
No_of_seqs 145 out of 163
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 21:29:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13520.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13520hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qsaa1 a.118.5.1 (A:1-450) 70 17.8 41 0.003 27.8 3.4 37 138-184 323-359 (450)
2 d1xn7a_ a.4.5.62 (A:) Hypothet 17.0 17 0.0013 25.5 0.6 21 26-50 30-50 (78)
3 d1ob1c2 g.3.11.4 (C:46-96) Mer 15.3 22 0.0016 23.1 0.7 12 186-199 38-49 (51)
4 d1w6ta2 d.54.1.1 (A:1-137) Eno 8.8 1.4E+02 0.01 22.0 3.7 54 144-209 77-135 (137)
5 d1eysh2 f.23.10.1 (H:7-43) Pho 7.8 84 0.0061 19.0 1.5 19 190-212 3-21 (37)
6 d2ejna2 a.101.1.1 (A:75-144) A 7.2 1.3E+02 0.0094 20.3 2.5 16 135-150 3-18 (70)
7 d1ev0a_ d.71.1.1 (A:) Cell div 6.9 36 0.0026 22.4 -0.6 26 13-38 1-26 (58)
8 d1njra_ c.50.1.2 (A:) Hypothet 6.8 76 0.0056 25.8 1.4 20 127-146 177-196 (264)
9 d1ntca_ a.4.1.12 (A:) DNA-bind 6.3 85 0.0062 20.8 1.2 10 141-150 68-77 (91)
10 d1o5ha_ a.191.1.1 (A:) Hypothe 6.2 2.6E+02 0.019 21.3 4.3 15 122-136 27-41 (200)
No 1
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=17.80 E-value=41 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHhhhhhhhhhhhc
Q psy13520 138 YFLSRAARLSLLDPDDVDDLTLVDKLKLKIETLVNKVGFFGILACAS 184 (238)
Q Consensus 138 Yf~araarlsg~~~d~~e~~~~~~~~K~~~~~~~~k~Gf~~Il~~as 184 (238)
||.|||....|.. +..+.+....-+..+|+|.|+..-
T Consensus 323 YW~gRa~~~~G~~----------~~A~~~~~~~a~~~~fYG~LAa~~ 359 (450)
T d1qsaa1 323 YWQADLLLERGRE----------AEAKEILHQLMQQRGFYPMVAAQR 359 (450)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCh----------hhHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999999854 234445555667778888887654
No 2
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=17.02 E-value=17 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.7
Q ss_pred hHHHHHHHhhccCCCCcccccccch
Q psy13520 26 QPINLVMCESLSVPCAPVDIEEPAL 50 (238)
Q Consensus 26 ~~liqVmREy~s~~~~kVDkLe~se 50 (238)
+|+|+.|-|-++ -+.|+|+.|
T Consensus 30 ~Plv~AMLerL~----aMGK~erie 50 (78)
T d1xn7a_ 30 QPMINAMLQQLE----SMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHHHH----HHTSEEEEC
T ss_pred hHHHHHHHHHHH----Hhhcceecc
Confidence 789999999999 777877654
No 3
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=15.25 E-value=22 Score=23.14 Aligned_cols=12 Identities=67% Similarity=1.348 Sum_probs=6.6
Q ss_pred CCchhhhhhhhccc
Q psy13520 186 PNPLFDLAGITCGH 199 (238)
Q Consensus 186 PNplFDLaGi~cGh 199 (238)
|||+|| |+.|.|
T Consensus 38 ~~~~~~--GVFCS~ 49 (51)
T d1ob1c2 38 SYPLFD--GIFCSH 49 (51)
T ss_dssp CCEEGG--GTEECC
T ss_pred CCcccc--eEEeec
Confidence 566664 555543
No 4
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=8.78 E-value=1.4e+02 Score=21.98 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=33.4
Q ss_pred HHhcCCCCCCchhhhHHHHHHHHHHHHH-----HhhhhhhhhhhhcCCCchhhhhhhhccccchhhHHHHH
Q psy13520 144 ARLSLLDPDDVDDLTLVDKLKLKIETLV-----NKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFG 209 (238)
Q Consensus 144 arlsg~~~d~~e~~~~~~~~K~~~~~~~-----~k~Gf~~Il~~asiPNplFDLaGi~cGhFlvPFw~Ff~ 209 (238)
-.|.|.++.|.+. +| ..|.++- .++|--+||+++ +=+|=-.+-.-.+|.|+|+|
T Consensus 77 ~~L~G~d~~dq~~---iD---~~lielDgT~nks~lGaNailAvS------lA~akAaA~~~~~pLy~yig 135 (137)
T d1w6ta2 77 EAIIGYDVRDQQA---ID---RAMIALDGTPNKGKLGANAILGVS------IAVARAAADYLEIPLYSYLG 135 (137)
T ss_dssp HHHTTSBTTCHHH---HH---HHHHHHHCSTTCTTTCHHHHHHHH------HHHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCccccHHH---HH---HHHHHhcCcccccccchhHHHHHH------HHHHHHHHHHcCCcHHHhhc
Confidence 3567777655433 22 2244444 388999999886 43444444555789999987
No 5
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=7.76 E-value=84 Score=18.96 Aligned_cols=19 Identities=42% Similarity=0.779 Sum_probs=12.5
Q ss_pred hhhhhhhccccchhhHHHHHHHh
Q psy13520 190 FDLAGITCGHFLIPFWTFFGATL 212 (238)
Q Consensus 190 FDLaGi~cGhFlvPFw~Ff~Atl 212 (238)
+|||-+. +.-||-||.+..
T Consensus 3 ~D~Aql~----ly~Fw~FFagLi 21 (37)
T d1eysh2 3 IDAAQIT----IWAFWLFFFGLI 21 (37)
T ss_dssp CCHHHHH----HHHHHHHHHHHH
T ss_pred ccHHHHH----HHHHHHHHHHHH
Confidence 5666554 456899987654
No 6
>d2ejna2 a.101.1.1 (A:75-144) Allergen Fel d I-B chain {Cat (Felis catus) [TaxId: 9685]}
Probab=7.24 E-value=1.3e+02 Score=20.27 Aligned_cols=16 Identities=13% Similarity=-0.027 Sum_probs=13.9
Q ss_pred CcHHHHHHHHHhcCCC
Q psy13520 135 LPPYFLSRAARLSLLD 150 (238)
Q Consensus 135 LppYf~araarlsg~~ 150 (238)
-||+|-+++|-++|.+
T Consensus 3 C~~Ff~~y~~vlsG~r 18 (70)
T d2ejna2 3 CPIFYDVFFAVANGNE 18 (70)
T ss_dssp CHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHhhhH
Confidence 4789999999999965
No 7
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=36 Score=22.43 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.2
Q ss_pred ccccccCCCCCCChHHHHHHHhhccC
Q psy13520 13 RSSFSSATMPQPTQPINLVMCESLSV 38 (238)
Q Consensus 13 ~~~~~~~~~~~~~~~liqVmREy~s~ 38 (238)
|++.+..-+||-.+-|++|.|-|...
T Consensus 1 R~~~~PDyLp~Lq~eil~VI~KyV~I 26 (58)
T d1ev0a_ 1 RSDAEPHYLPQLRKDILEVICKYVQI 26 (58)
T ss_dssp CGGGTTSSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCcchHHHHHHHHHHHHHHhEee
Confidence 45566677888889999999999983
No 8
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.84 E-value=76 Score=25.75 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.0
Q ss_pred HhhhhccCCcHHHHHHHHHh
Q psy13520 127 GAGTALGELPPYFLSRAARL 146 (238)
Q Consensus 127 G~GTALGELppYf~araarl 146 (238)
|+||.+|.+||.-.||..+.
T Consensus 177 aigTGvgg~p~~~aAr~m~~ 196 (264)
T d1njra_ 177 GLCTGYAGVPPIISCKSMAF 196 (264)
T ss_dssp CTTCSTTCCCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHH
Confidence 68999999999999985543
No 9
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=6.33 E-value=85 Score=20.75 Aligned_cols=10 Identities=40% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHhcCCC
Q psy13520 141 SRAARLSLLD 150 (238)
Q Consensus 141 araarlsg~~ 150 (238)
++||+++|..
T Consensus 68 ~~AA~~LGI~ 77 (91)
T d1ntca_ 68 QEAARLLGWG 77 (91)
T ss_dssp THHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 3478888743
No 10
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=6.24 E-value=2.6e+02 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=13.0
Q ss_pred HHHHHHhhhhccCCc
Q psy13520 122 EAMMWGAGTALGELP 136 (238)
Q Consensus 122 ea~lWG~GTALGELp 136 (238)
.|+...+|.||+.+.
T Consensus 27 aAl~galg~aL~~MV 41 (200)
T d1o5ha_ 27 GSVVGAMACALAEMV 41 (200)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677899999999876
Done!