RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13520
(238 letters)
>gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein. This is a
family of SNARE associated Golgi proteins. The yeast
member of this family localises with the t-SNARE Tlg2.
Length = 123
Score = 44.6 bits (106), Expect = 4e-06
Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 128 AGTALGELPPYFLSRAARLS-----LLDPDDVDDLTLVDKLKLKIETLVNKVGFFGILAC 182
G LG L Y L R LL L ++E LV + GF +L
Sbjct: 25 LGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRL-------QRVERLVERYGFKALLLL 77
Query: 183 ASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
+P DL G + F F T +G
Sbjct: 78 RLLPGVPRDLVNYVAGLSRVSFRRFLLGTFLGILP 112
>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function
unknown].
Length = 223
Score = 34.2 bits (79), Expect = 0.036
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 128 AGTALGELPPYFLSRAARLSLLDPDDVDDLTLVDKLKLKIETLVNKVGFFGILACASIPN 187
G G + L+R + V V ++ +E + GF+ IL IP
Sbjct: 90 IGATAGSTLAFLLARYLGRDWVLKF-VGGKEKVQRIDAGLE----RNGFWAILLLRLIPI 144
Query: 188 PLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
FDL G I F F ATL+GK
Sbjct: 145 FPFDLVNYAAGLTGISFRDFAIATLLGKLP 174
>gnl|CDD|224159 COG1238, COG1238, Predicted membrane protein [Function unknown].
Length = 161
Score = 30.0 bits (68), Expect = 0.68
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 161 DKLKLKIETLVNKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAV 217
+ L+ E + G + +L + +P P+ D+ + G + F F +GKA
Sbjct: 90 EALEKLQEKWYRRYGVWTLLL-SWLP-PIGDVLTLLAGWLRLNFLPFILLVFLGKAA 144
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 30.3 bits (69), Expect = 0.97
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 37 SVPCAPVDIEEPALSK---RRTDSY--STQPINLIMCESLSVPCAPVDIEEP 83
+ P + E A S + +T P NL ++S+P + P
Sbjct: 364 TTPTPAPRLGEAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFSEDGLP 415
Score = 28.4 bits (64), Expect = 4.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 14 SSFSSATMPQPTQPINLVMCESLSVPCAPVDIEEP 48
++ T P NL ++S+P + P
Sbjct: 381 VLYNLLDFTANTVPANLAGLPAISLPAGFSEDGLP 415
>gnl|CDD|213577 TIGR01018, rpsD_arch, ribosomal protein S4(archaeal
type)/S9(eukaryote cytosolic type). This model finds
eukaryotic ribosomal protein S9 as well as archaeal
ribosomal protein S4 [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 162
Score = 28.5 bits (64), Expect = 2.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 140 LSRAARLSLLDP-----DDVDDLTLVDKLKLKIETLVNKVG 175
L R RL +LD DDV LT+ D L+ +++T V K G
Sbjct: 74 LRRLVRLGILDEENAKLDDVLGLTVEDFLERRLQTQVFKKG 114
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate
4-alpha-galacturonosyltransferase.
Length = 657
Score = 28.8 bits (64), Expect = 2.7
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 114 SIMNKVKLEAMMWGAGTALGELPPYFLSRAAR----LSLLDPDDVDDLTLVDKLKL---- 165
S+M + + G T+ EL L +A LS+ D T+ KL+
Sbjct: 227 SLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQS 286
Query: 166 ---KIETLVNKVGFFGILACASIPNPL 189
K++ L K F LA ++P PL
Sbjct: 287 TERKVDALKKKSAFLIQLAAKTVPKPL 313
>gnl|CDD|233253 TIGR01057, topA_arch, DNA topoisomerase I, archaeal. This model
describes topoisomerase I from archaea. These enzymes
are involved in the control of DNA topology. DNA
topoisomerase I belongs to the type I topoisomerases,
which are ATP-independent [DNA metabolism, DNA
replication, recombination, and repair].
Length = 618
Score = 28.6 bits (64), Expect = 3.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 181 ACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAVIKMSIQGNKWVPGTR 232
A I L D + + +P+W GK +I S G+ + +
Sbjct: 7 VAAKIAGALSDGRVLKKSEYGVPYWEVRRD---GKKIIVASAVGHLFGLHPK 55
>gnl|CDD|212594 cd11720, FANCI, Fanconi anemia I protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCI
may function as a molecular switch to turn on the FA
pathway.
Length = 1202
Score = 28.4 bits (64), Expect = 4.2
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 1 MANIRRLSDFTARSSFSSATMPQPTQPINLVMCESL 36
+ + S ++ SS + A++ +Q + ESL
Sbjct: 501 LLSSLGSSQSSSASSSTQASIDVHSQYSSSESNESL 536
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 27.9 bits (62), Expect = 4.7
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 12 ARSSFSSAT-MPQPTQPINLVMCESLSVPCAPVDIEEPALSKRRTDSYSTQPINLIMCES 70
R+ +P + S+ V V PAL+ + D T L +
Sbjct: 113 VRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETL---LSPKDK 169
Query: 71 LSVPCAPV---DIEEPALSKRRTD 91
+S+ ++E +S+R+ D
Sbjct: 170 ISLNSEKPKFKELESELVSRRKND 193
>gnl|CDD|179730 PRK04051, rps4p, 30S ribosomal protein S4P; Validated.
Length = 177
Score = 27.1 bits (61), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 139 FLSRAARLSLLDP----DDVDDLTLVDKLKLKIETLVNKVGF 176
L + R +L DDV LT+ D L+ +++T+V + G
Sbjct: 73 LLGKLKRYGILKENATLDDVLSLTVEDILERRLQTIVYRKGL 114
>gnl|CDD|131673 TIGR02624, rhamnu_1P_ald, rhamnulose-1-phosphate aldolase. Members
of this family are the enzyme RhaD,
rhamnulose-1-phosphate aldolase.
Length = 270
Score = 27.1 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 124 MMWG---AGTALGELPPYFLSRAARLSLLDPDD 153
++WG G ELP +F+S ARL +DP++
Sbjct: 103 LLWGLTDGGVPTSELPAHFMSHIARLK-VDPEN 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,186,707
Number of extensions: 1143549
Number of successful extensions: 889
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 21
Length of query: 238
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 144
Effective length of database: 6,768,326
Effective search space: 974638944
Effective search space used: 974638944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)