RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13520
         (238 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 62/198 (31%)

Query: 56  DSYSTQPINL----IMCESLSVPCAPVDIEEPALSKRRTDSYSEINGGESPGVAADWVPS 111
           D+YST+P+ L    +    L VP A         S+ + + +++I    + G AAD  P+
Sbjct: 2   DAYSTRPLTLSHGSLEH-VLLVPTASF----FIASQLQ-EQFNKILPEPTEGFAADDEPT 55

Query: 112 ----LWS-----IMNKV---KLEAMMWGAGTALGELPPYFL------SRAARLSLLDPDD 153
               L       + + V   K+          L E    +L      + AA+L       
Sbjct: 56  TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL------L 109

Query: 154 VDDLTLVDKLKLKIETLVNKVGFFGILACASIPNP------LFDLAGITCGHFLIPFWTF 207
            ++ T + K K  I+       +      A  P        LF       G+        
Sbjct: 110 QENDTTLVKTKELIKN------YITARIMAKRPFDKKSNSALFRAV--GEGN--AQLVAI 159

Query: 208 FGATLIGKAVIKMSIQGN 225
           FG    G        QGN
Sbjct: 160 FG----G--------QGN 165


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 48/135 (35%)

Query: 134 ELPPYFLSRAARLSLLDPDDVDDLTLVDKLKLKIETLV---------------------- 171
           EL     S+     LL   +V +    +   L  + L+                      
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 172 -NKVGF-----FGILA------CASIP------NPLFDLAGITCGHFLIPF---WTFFGA 210
            + +         +L          +P      NP   L+ I     +      W  +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSII--AESIRDGLATWDNWKH 349

Query: 211 TLIGK--AVIKMSIQ 223
               K   +I+ S+ 
Sbjct: 350 VNCDKLTTIIESSLN 364


>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
           tRNA processing, hydrolase,translation; 1.60A
           {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
          Length = 375

 Score = 27.4 bits (61), Expect = 4.7
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 23/75 (30%)

Query: 140 LSRAARLSLLDPDDVDDLT-----LVDKLKLKI--------ETLVNKVGFFGILACASIP 186
           L     L+L+DP  + D +     L D    K         E  +N  G         +P
Sbjct: 46  LFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE--------LP 97

Query: 187 NPLFD--LAGITCGH 199
            PL D  +    CG 
Sbjct: 98  QPLIDTQILAAFCGR 112


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,631,061
Number of extensions: 210220
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 5
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)