BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13521
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 97.4 bits (241), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRI-E 109
DP+ WFH + +K +A ++L+ G SFLVRPSDN+PGDYSL+F N IQRF+I
Sbjct: 11 DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70
Query: 110 KKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPV 147
+++MGGR + + +I+ YRKEQIVEG+ L PV
Sbjct: 71 TPNNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPV 108
Score = 84.0 bits (206), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRI-EKKAVRYLMGGRTFECLDAVINRYRKEQIV 223
SFLVRPSDN+PGDYSL+F N IQRF+I +++MGGR + + +I+ YRKEQIV
Sbjct: 40 SFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIV 99
Query: 224 EGHTLGFPV 232
EG+ L PV
Sbjct: 100 EGYYLKEPV 108
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 35/204 (17%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFHP T +A ++L+ G GSFL RPS ++PGD +L N + +I+ Y L
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDL 65
Query: 117 MGGRTFECLDAVINRYR------KEQIVEGHTLGFPVT---RMSRQW-----------KI 156
GG F L ++ Y KE+ + L +P+ S +W K+
Sbjct: 66 YGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKL 125
Query: 157 ATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM-----------GGR 205
T+ H SFLVR S + PGD+ L + K V ++M GG
Sbjct: 126 LTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGE 185
Query: 206 TFECLDAVINRYRKEQIVEGHTLG 229
F+ L ++ Y+K +VE TLG
Sbjct: 186 RFDSLTDLVEHYKKNPMVE--TLG 207
>pdb|2GQI|A Chain A, Solution Structure Of The Sh3 Domain Of Human Ras
Gtpase- Activating Protein 1
Length = 71
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 39/47 (82%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
+PDTDE++F KGD+F VHNEL DGW+WVT RT EQG+I DLVE++
Sbjct: 19 VPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>pdb|2J05|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.5
Angstrom Resolution
pdb|2J05|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.5
Angstrom Resolution
pdb|2J06|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.8
Angstrom Resolution
pdb|2J06|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.8
Angstrom Resolution
Length = 65
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
+PDTDE++F KGD F VHNEL DGW WVT RT EQG+I DLVE++
Sbjct: 17 VPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 63
>pdb|4FSS|A Chain A, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|B Chain B, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|C Chain C, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
Length = 62
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
+PDTDE++F KGD F VHNEL DGW WVT RT EQG+I DLVE++
Sbjct: 14 VPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 60
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
DEL+F++GDI V NE D W A G+ G I ++ +E + P+ WF +
Sbjct: 15 DELSFKRGDILKVLNEECDQ-NWYKAELNGKDGFIPKNYIE-----MKPHP---WFFGKI 65
Query: 65 TKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTF 122
+ A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y + F
Sbjct: 66 PRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKF 125
Query: 123 ECLDAVINRYRKEQIVEGHTL 143
L+ +++ +R + +
Sbjct: 126 NSLNELVDYHRSTSVSRNQQI 146
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 223
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 82 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 141
Query: 224 EGHTL 228
+
Sbjct: 142 RNQQI 146
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 34/200 (17%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFH + + DA +L G GSFL RPS + GD+SL + +Q+ RI+ Y L
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 117 MGGRTFECLDAVINRYRKEQIV----EGHT--LGFPVT---RMSRQWK------------ 155
GG F L ++ Y ++Q V +G L +P+ S +W
Sbjct: 64 YGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETL 123
Query: 156 IATKGSCHKSFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLMGG-R 205
+ KG +FLVR S + PGD+ L + ++ ++ + RY +GG
Sbjct: 124 LQAKGEPW-TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLE 182
Query: 206 TFECLDAVINRYRKEQIVEG 225
TF+ L ++ ++K I E
Sbjct: 183 TFDSLTDLVEHFKKTGIEEA 202
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 34/200 (17%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFH + + DA +L G GSFL RPS + GD+SL + +Q+ RI+ Y L
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 117 MGGRTFECLDAVINRYRKEQIV----EGHT--LGFPVT---RMSRQWK------------ 155
GG F L ++ Y ++Q V +G L +P+ S +W
Sbjct: 64 YGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETL 123
Query: 156 IATKGSCHKSFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLMGG-R 205
+ KG +FLVR S + PGD+ L + ++ ++ + RY +GG
Sbjct: 124 LQAKGEPW-TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLE 182
Query: 206 TFECLDAVINRYRKEQIVEG 225
TF+ L ++ ++K I E
Sbjct: 183 TFDSLTDLVEHFKKTGIEEA 202
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFHP T +A ++L+ G GSFL RPS ++PGD++L N + +I+ Y L
Sbjct: 4 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDL 63
Query: 117 MGGRTFECLDAVINRY 132
GG F L ++ Y
Sbjct: 64 YGGEKFATLAELVQYY 79
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGR 205
+T + + + T+G SFL RPS ++PGD++L N + +I+ Y L GG
Sbjct: 9 ITGVEAENLLLTRG-VDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGE 67
Query: 206 TFECLDAVINRY 217
F L ++ Y
Sbjct: 68 KFATLAELVQYY 79
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr
Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex With
Rvipyfvplnr Peptide
Length = 109
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFHP T +A ++L+ G GSFL RPS ++PGD++L N + +I+ Y L
Sbjct: 9 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDL 68
Query: 117 MGGRTFECLDAVINRY 132
GG F L ++ Y
Sbjct: 69 YGGEKFATLAELVQYY 84
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRY 217
SFL RPS ++PGD++L N + +I+ Y L GG F L ++ Y
Sbjct: 31 SFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYY 84
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNT---VFDWFHP 62
+L F KGD+ + D + ++ G +G+I + V+ E + T + WFH
Sbjct: 27 DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK-REGVKAGTKLSLMPWFHG 85
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT- 121
+ T+ A +L G FLVR S N PGDY+L +++ +RI A + +
Sbjct: 86 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145
Query: 122 FECLDAVINRY 132
FE L ++ Y
Sbjct: 146 FENLMQLVEHY 156
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 166 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRY 217
FLVR S N PGDY+L +++ +RI A + + FE L ++ Y
Sbjct: 104 FLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHY 156
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 76 AGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVIN 130
A GSFLVR S+ GDY+L F N ++Q RI + +L F+ L +I
Sbjct: 34 APDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLIT 93
Query: 131 RYRKEQIVEGH---TLGFPVTRM----SRQWKIA--TKGSCHKSFLVRPSD--------N 173
Y++ + L PV + S++W A T+ + P D N
Sbjct: 94 HYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN 153
Query: 174 SPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 233
P Y++ F +I+ R++++ ++G F+ L +I+ Y K + L +P+
Sbjct: 154 EPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPIN 213
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W+H T+ A ML++ G+FLVR N P Y++ F +I+ R++++ +
Sbjct: 123 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVM 181
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIAT 158
+G F+ L +I+ Y K + L +P+ + + KI T
Sbjct: 182 LGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALE-KIGT 222
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 149 RMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMG 203
R+ ++ I T G+ SFLVR S+ GDY+L F N ++Q RI + +L
Sbjct: 23 RLLTEYCIET-GAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTD 81
Query: 204 GRTFECLDAVINRYRK 219
F+ L +I Y++
Sbjct: 82 NLVFDSLYDLITHYQQ 97
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 76 AGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVIN 130
A GSFLVR S+ GDY+L F N ++Q RI + +L F+ L +I
Sbjct: 34 APDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLIT 93
Query: 131 RYRKEQIVEGH---TLGFPVTRM----SRQWKIA--TKGSCHKSFLVRPSD--------N 173
Y++ + L PV + S++W A T+ + P D N
Sbjct: 94 HYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN 153
Query: 174 SPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 233
P Y++ F +I+ R++++ ++G F+ L +I+ Y K + L +P+
Sbjct: 154 EPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPIN 213
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W+H T+ A ML++ G+FLVR N P Y++ F +I+ R++++ +
Sbjct: 123 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVM 181
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIAT 158
+G F+ L +I+ Y K + L +P+ + + KI T
Sbjct: 182 LGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALE-KIGT 222
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 149 RMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMG 203
R+ ++ I T G+ SFLVR S+ GDY+L F N ++Q RI + +L
Sbjct: 23 RLLTEYCIET-GAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTD 81
Query: 204 GRTFECLDAVINRYRK 219
F+ L +I Y++
Sbjct: 82 NLVFDSLYDLITHYQQ 97
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 76 AGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVIN 130
A GSFLVR S+ GDY+L F N ++Q RI + +L F+ L +I
Sbjct: 34 APDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLIT 93
Query: 131 RYRKEQIVEGH---TLGFPVTRM----SRQWKIA--TKGSCHKSFLVRPSD--------N 173
Y++ + L PV + S++W A T+ + P D N
Sbjct: 94 HYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN 153
Query: 174 SPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 233
P Y++ F +I+ R++++ ++G F+ L +I+ Y K + L +P+
Sbjct: 154 EPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPIN 213
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W+H T+ A ML++ G+FLVR N P Y++ F +I+ R++++ +
Sbjct: 123 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVM 181
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIAT 158
+G F+ L +I+ Y K + L +P+ + + KI T
Sbjct: 182 LGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALE-KIGT 222
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 149 RMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMG 203
R+ ++ I T G+ SFLVR S+ GDY+L F N ++Q RI + +L
Sbjct: 23 RLLTEYCIET-GAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTD 81
Query: 204 GRTFECLDAVINRYRK 219
F+ L +I Y++
Sbjct: 82 NLVFDSLYDLITHYQQ 97
>pdb|1WQ1|G Chain G, Ras-Rasgap Complex
pdb|1WER|A Chain A, Ras-Gtpase-Activating Domain Of Human P120gap
Length = 334
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 264 VMPSEEYSPLQQLLLESDLAVVKALADVCHGDRNRLASSLLRIFSLDVKETL 315
+MP EEYS ++L+L+ +L VV AL+ VC DR LAS LLRIF + E+L
Sbjct: 4 IMPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFLHEKLESL 55
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
W++ + T++ A L + G G FL+R S++SP D+S+ + + F+++ K Y +
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 62
Query: 118 GGRTFECLDAVINRYRKEQI 137
G R F ++ ++ Y+K I
Sbjct: 63 GQRKFSTMEELVEHYKKAPI 82
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT 206
VTR + + +G FL+R S++SP D+S+ + + F+++ K Y +G R
Sbjct: 8 VTRHQAEMALNERGH-EGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRK 66
Query: 207 FECLDAVINRYRKEQI 222
F ++ ++ Y+K I
Sbjct: 67 FSTMEELVEHYKKAPI 82
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
W++ + T++ A L + G G FL+R S++SP D+S+ + + F+++ K Y +
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 66
Query: 118 GGRTFECLDAVINRYRKEQI 137
G R F ++ ++ Y+K I
Sbjct: 67 GQRKFSTMEELVEHYKKAPI 86
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT 206
VTR + + +G FL+R S++SP D+S+ + + F+++ K Y +G R
Sbjct: 12 VTRHQAEMALNERGH-EGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRK 70
Query: 207 FECLDAVINRYRKEQI 222
F ++ ++ Y+K I
Sbjct: 71 FSTMEELVEHYKKAPI 86
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
++L+FQKGD V E G+ W + T ++G I + V +D +WF
Sbjct: 24 EDLSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYV----ARVDSLETEEWFFKGI 78
Query: 65 TKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--- 119
++ DA L+ G GSF++R S+ + G YSL + Q ++ +R L G
Sbjct: 79 SRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFY 138
Query: 120 ----RTFECLDAVINRYRK 134
TF L +++ Y+K
Sbjct: 139 ISPRSTFSTLQELVDHYKK 157
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-- 204
++R + ++ G+ SF++R S+ + G YSL + Q ++ +R L G
Sbjct: 78 ISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGF 137
Query: 205 -----RTFECLDAVINRYRK 219
TF L +++ Y+K
Sbjct: 138 YISPRSTFSTLQELVDHYKK 157
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W+H T+ A ML++ G+FLVR N P Y++ F +I+ R++++ +
Sbjct: 10 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVM 68
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 148
+G F+ L +I+ Y K + L +P+
Sbjct: 69 LGNSEFDSLVDLISYYEKHPLYRKMKLRYPIN 100
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 224
+FLVR N P Y++ F +I+ R++++ ++G F+ L +I+ Y K +
Sbjct: 33 AFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYR 91
Query: 225 GHTLGFPVT 233
L +P+
Sbjct: 92 KMKLRYPIN 100
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYL 116
+WFH +++ A ++L+ G F++R S +SPGD+S+ + +Q F++ + Y
Sbjct: 10 EWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYF 69
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ YR I
Sbjct: 70 LWTEKFPSLNKLVDYYRTTSI 90
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 123 ECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFF 182
E ++R++ E ++ G +GF F++R S +SPGD+S+
Sbjct: 10 EWFHEGLSRHQAENLLMGKDIGF--------------------FIIRASQSSPGDFSISV 49
Query: 183 HINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQI 222
+ +Q F++ + Y + F L+ +++ YR I
Sbjct: 50 RHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSI 90
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
++L+FQKGD V E G+ W + T ++G I + V +D +WF
Sbjct: 23 EDLSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVARVDSL----ETEEWFFKGI 77
Query: 65 TKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--- 119
++ DA L+ G GSF++R S+ + G YSL + Q ++ +R L G
Sbjct: 78 SRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFY 137
Query: 120 ----RTFECLDAVINRYRK 134
TF L +++ Y+K
Sbjct: 138 ISPRSTFSTLQELVDHYKK 156
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-- 204
++R + ++ G+ SF++R S+ + G YSL + Q ++ +R L G
Sbjct: 77 ISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGF 136
Query: 205 -----RTFECLDAVINRYRK 219
TF L +++ Y+K
Sbjct: 137 YISPRSTFSTLQELVDHYKK 156
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
++L+FQKGD V E G+ W + T ++G I + V +D +WF
Sbjct: 17 EDLSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVARVDSL----ETEEWFFKGI 71
Query: 65 TKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--- 119
++ DA L+ G GSF++R S+ + G YSL + Q ++ +R L G
Sbjct: 72 SRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFY 131
Query: 120 ----RTFECLDAVINRYRK 134
TF L +++ Y+K
Sbjct: 132 ISPRSTFSTLQELVDHYKK 150
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-- 204
++R + ++ G+ SF++R S+ + G YSL + Q ++ +R L G
Sbjct: 71 ISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGF 130
Query: 205 -----RTFECLDAVINRYRK 219
TF L +++ Y+K
Sbjct: 131 YISPRSTFSTLQELVDHYKK 150
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W++ T++ A L + G G FL+R S++SP D+S+ + + + F+++ Y
Sbjct: 2 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 61
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+G R F +D ++ Y+K I
Sbjct: 62 IGQRRFHTMDELVEHYKKAPI 82
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT 206
VTR + + +G FL+R S++SP D+S+ + + + F+++ Y +G R
Sbjct: 8 VTRHQAECALNERG-VEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRR 66
Query: 207 FECLDAVINRYRKEQI 222
F +D ++ Y+K I
Sbjct: 67 FHTMDELVEHYKKAPI 82
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W++ T++ A L + G G FL+R S++SP D+S+ + + + F+++ Y
Sbjct: 6 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 65
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+G R F +D ++ Y+K I
Sbjct: 66 IGQRRFHTMDELVEHYKKAPI 86
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT 206
VTR + + +G FL+R S++SP D+S+ + + + F+++ Y +G R
Sbjct: 12 VTRHQAECALNERG-VEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRR 70
Query: 207 FECLDAVINRYRKEQI 222
F +D ++ Y+K I
Sbjct: 71 FHTMDELVEHYKKAPI 86
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
D+L+F KG+ F + N W + TGE G I + V +D +W+ +
Sbjct: 18 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV----APVDSIQAEEWYFGKL 73
Query: 65 TKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFH-----INNQIQRFRIEK--KAVRY 115
+ DA L+ G G+FL+R S+ + G YSL + ++ ++I K Y
Sbjct: 74 GRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYY 133
Query: 116 LMGGRTFECLDAVINRY 132
+ FE L ++ Y
Sbjct: 134 ITTRAQFETLQQLVQHY 150
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR 114
++ WFH + T+ A +L G FLVR S N PGDY+L + +++ +RI A +
Sbjct: 6 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASK 65
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 166 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR 199
FLVR S N PGDY+L + +++ +RI A +
Sbjct: 32 FLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASK 65
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
D+L+F KG+ F + N W + TGE G I + V +D +W+ +
Sbjct: 19 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV----APVDSIQAEEWYFGKL 74
Query: 65 TKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFH-----INNQIQRFRIEK--KAVRY 115
+ DA L+ G G+FL+R S+ + G YSL + ++ ++I K Y
Sbjct: 75 GRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRKLDNGGYY 134
Query: 116 LMGGRTFECLDAVINRYRKE 135
+ FE L ++ Y ++
Sbjct: 135 ITTRAQFETLQQLVQHYSEK 154
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR 114
++ WFH + T+ A +L G FLVR S N PGDY+L + +++ +RI A +
Sbjct: 6 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASK 65
Query: 115 YLMGGRT-FECLDAVINRY 132
+ FE L ++ Y
Sbjct: 66 LSIDEEVYFENLMQLVEHY 84
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 166 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRY 217
FLVR S N PGDY+L + +++ +RI A + + FE L ++ Y
Sbjct: 32 FLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHY 84
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 65 LWVVKFNSLNELVDYHRSTSV 85
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 85
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 3 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 63 LWVVKFNSLNELVDYHRSTSV 83
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 25 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 83
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 69 LWVVKFNSLNELVDYHRSTSV 89
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 31 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 89
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain
Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
Length = 98
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 66 LWVVKFNSLNELVDYHRSTSV 86
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 28 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 86
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 66 LWVVKFNSLNELVDYHRSTSV 86
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 28 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 86
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 4 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 63
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 64 LWVVKFNSLNELVDYHRSTSV 84
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 26 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 84
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 65 LWVVKFNSLNELVDYHRSTSV 85
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 85
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 65 LWVVKFNSLNELVDYHRSTSV 85
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 85
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 69 LWVVKFNSLNELVDYHRSTSV 89
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 31 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 89
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 69 LWVVKFNSLNELVDYHRSTSV 89
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 31 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 89
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 68 LWVVKFNSLNELVDYHRSTSV 88
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 88
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 72
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 73 LWVVKFNSLNELVDYHRSTSV 93
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 35 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 93
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 68 LWVVKFNSLNELVDYHRSTSV 88
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 88
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 68 LWVVKFNSLNELVDYHRSTSV 88
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 88
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 74
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 75 LWVVKFNSLNELVDYHRSTSV 95
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 37 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 95
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 WFHPECTKNDAVDMLVKA-GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYL 116
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + A +Y
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 73
Query: 117 MGGRTFECLDAVINRYRKEQI 137
+ F L+ +++ +R +
Sbjct: 74 LWVVKFNSLNELVDYHRSTSV 94
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 36 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 94
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D DE++FQ GD ++ DGW++ T RTG+ GM+ + VE
Sbjct: 16 DEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 5 DELTFQKGDIFFV--HNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+ L+ KG+ V +N G+ W A QG + + + ++ +++ ++ W+H
Sbjct: 55 NTLSITKGEKLRVLGYNHNGE---WCEAQTKNGQGWVPSNYITPVN-SLEKHS---WYHG 107
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
++N A +L GSFLVR S++SPG S+ ++ +RI
Sbjct: 108 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 153
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMG 203
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI + Y+
Sbjct: 108 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSS 165
Query: 204 GRTFECLDAVINRYRKEQIVEG--HTLGFPVTRTEDWFSLAGVTP-IGEWGSLRLKFRYS 260
F L +++ + + +G TL +P + ++ GV+P +W R
Sbjct: 166 ESRFNTLAELVHHH--STVADGLITTLHYPAPKRNK-PTVYGVSPNYDKWEMERTDITMK 222
Query: 261 HDL 263
H L
Sbjct: 223 HKL 225
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 59 WFHPECTKNDAVDMLVK-------AGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI--- 108
WFH + + + L++ A G+FLVR S+ P DY+L F + ++Q RI
Sbjct: 24 WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 109 -EKKAVR-YLMGGRTFECLDAVINRYRKEQI 137
E ++ YL TF + A+I YR+ +
Sbjct: 84 MENGVMKYYLTDNLTFNSIYALIQHYREAHL 114
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 153 QWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRI----EKKAVR-YLMGGRTF 207
Q A G+ +FLVR S+ P DY+L F + ++Q RI E ++ YL TF
Sbjct: 40 QEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTF 99
Query: 208 ECLDAVINRYRKEQI 222
+ A+I YR+ +
Sbjct: 100 NSIYALIQHYREAHL 114
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 5 DELTFQKGDIFFV--HNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+ L+ KG+ V +N G+ W A QG + + + ++ +++ ++ W+H
Sbjct: 58 NTLSITKGEKLRVLGYNHNGE---WCEAQTKNGQGWVPSNYITPVN-SLEKHS---WYHG 110
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
++N A +L GSFLVR S++SPG S+ ++ +RI
Sbjct: 111 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 156
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMG 203
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI + Y+
Sbjct: 111 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSS 168
Query: 204 GRTFECLDAVINRYRKEQIVEG--HTLGFPVTRTEDWFSLAGVTP-IGEWGSLRLKFRYS 260
F L +++ + + +G TL +P + ++ GV+P +W R
Sbjct: 169 ESRFNTLAELVHHH--STVADGLITTLHYPAPKRNK-PTIYGVSPNYDKWEMERTDITMK 225
Query: 261 HDL 263
H L
Sbjct: 226 HKL 228
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVK-AGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK 110
+P+ W++ ++ +A DML++ G+FL+R + + Y++ F +++ RI +
Sbjct: 14 NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72
Query: 111 KAVRYLMGGRT-FECLDAVINRYRKEQIVEGHTLGFPVT 148
+++G FE L +++ Y K + L +PVT
Sbjct: 73 DGRHFVLGTSAYFESLVELVSYYEKHALYRKMRLRYPVT 111
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRYRKEQIV 223
+FL+R + + Y++ F +++ RI + +++G FE L +++ Y K +
Sbjct: 43 AFLIRKREGT-DSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALY 101
Query: 224 EGHTLGFPVT 233
L +PVT
Sbjct: 102 RKMRLRYPVT 111
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 5 DELTFQKGDIFFV--HNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+ L+ KG+ V +N G+ W A QG + + + ++ +++ ++ W+H
Sbjct: 97 NTLSITKGEKLRVLGYNHNGE---WCEAQTKNGQGWVPSNYITPVN-SLEKHS---WYHG 149
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
++N A +L GSFLVR S++SPG S+ ++ +RI
Sbjct: 150 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 195
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMG 203
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI + Y+
Sbjct: 150 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSS 207
Query: 204 GRTFECLDAVINRYRKEQIVEG--HTLGFPVTRTEDWFSLAGVTP-IGEWGSLRLKFRYS 260
F L +++ + + +G TL +P + ++ GV+P +W R
Sbjct: 208 ESRFNTLAELVHHH--STVADGLITTLHYPAPKRNK-PTVYGVSPNYDKWEMERTDITMK 264
Query: 261 HDL 263
H L
Sbjct: 265 HKL 267
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 5 DELTFQKGDIFFV--HNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+ L+ KG+ V +N G+ W A QG + + + ++ W+H
Sbjct: 23 NTLSITKGEKLRVLGYNHNGE---WCEAQTKNGQGWVPSNYITPVNSL----EKHSWYHG 75
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA 112
++N A +L GSFLVR S++SPG S+ ++ +RI +
Sbjct: 76 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 125
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA 197
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI +
Sbjct: 76 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 125
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 6 ELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+L+F+KG+ + V+N GD WL AH TG+ G I + V D +W+
Sbjct: 18 DLSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDSI----QAEEWYFG 70
Query: 63 ECTKNDAVDMLVKA-GP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG- 119
+ T+ ++ +L+ A P G+FLVR S+ + G Y L + + ++ +R L G
Sbjct: 71 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130
Query: 120 -----RT-FECLDAVINRYRK 134
RT F L ++ Y K
Sbjct: 131 FYITSRTQFNSLQQLVAYYSK 151
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 6 ELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+L+F+KG+ + V+N GD WL AH TG+ G I + V D +W+
Sbjct: 18 DLSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDSI----QAEEWYFG 70
Query: 63 ECTKNDAVDMLVKA-GP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG- 119
+ T+ ++ +L+ A P G+FLVR S+ + G Y L + + ++ +R L G
Sbjct: 71 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130
Query: 120 -----RT-FECLDAVINRYRK 134
RT F L ++ Y K
Sbjct: 131 FYITSRTQFNSLQQLVAYYSK 151
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 6 ELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+L+F+KG+ + V+N GD WL AH TG+ G I + V D +W+
Sbjct: 18 DLSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDSI----QAEEWYFG 70
Query: 63 ECTKNDAVDMLVKA-GP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG- 119
+ T+ ++ +L+ A P G+FLVR S+ + G Y L + + ++ +R L G
Sbjct: 71 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130
Query: 120 -----RT-FECLDAVINRYRK 134
RT F L ++ Y K
Sbjct: 131 FYITSRTQFNSLQQLVAYYSK 151
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 6 ELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+L+F+KG+ + V+N GD WL AH TG+ G I + V D +W+
Sbjct: 101 DLSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDSI----QAEEWYFG 153
Query: 63 ECTKNDAVDMLVKA-GP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG- 119
+ T+ ++ +L+ A P G+FLVR S+ + G Y L + + ++ +R L G
Sbjct: 154 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 213
Query: 120 -----RT-FECLDAVINRYRK 134
RT F L ++ Y K
Sbjct: 214 FYITSRTQFNSLQQLVAYYSK 234
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECT 65
+L F+KG+ + + G+ W + TG++G I + V + +++P WF +
Sbjct: 20 DLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN-SLEPEP---WFFKNLS 74
Query: 66 KNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR--- 120
+ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 75 RKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYI 134
Query: 121 ----TFECLDAVINRY 132
TF L ++ Y
Sbjct: 135 SPRITFPGLHELVRHY 150
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR- 205
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 73 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGF 132
Query: 206 ------TFECLDAVINRY 217
TF L ++ Y
Sbjct: 133 YISPRITFPGLHELVRHY 150
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECT 65
+L F+KG+ + + G+ W + TG++G I + V + +++P WF +
Sbjct: 28 DLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN-SLEPEP---WFFKNLS 82
Query: 66 KNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR--- 120
+ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 83 RKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYI 142
Query: 121 ----TFECLDAVINRY 132
TF L ++ Y
Sbjct: 143 SPRITFPGLHELVRHY 158
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR- 205
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 81 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGF 140
Query: 206 ------TFECLDAVINRY 217
TF L ++ Y
Sbjct: 141 YISPRITFPGLHELVRHY 158
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECT 65
+L F+KG+ + + G+ W + TG++G I + V + +++P WF +
Sbjct: 28 DLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN-SLEPEP---WFFKNLS 82
Query: 66 KNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR--- 120
+ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 83 RKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYI 142
Query: 121 ----TFECLDAVINRY 132
TF L ++ Y
Sbjct: 143 SPRITFPGLHELVRHY 158
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR- 205
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 81 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGF 140
Query: 206 ------TFECLDAVINRY 217
TF L ++ Y
Sbjct: 141 YISPRITFPGLHELVRHY 158
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
DW+H + +A ++L K G FLVR S PG+Y L + + Q + F I+ Y
Sbjct: 18 DWYHGAIPRIEAQELLKKQG--DFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRF 75
Query: 118 GGRTFECLDAVIN-RYRKEQIV 138
G F + +I+ Y +Q++
Sbjct: 76 EGTGFSNIPQLIDHHYTTKQVI 97
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 166 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVIN-RYRKEQIV- 223
FLVR S PG+Y L + + Q + F I+ Y G F + +I+ Y +Q++
Sbjct: 39 FLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQVIT 98
Query: 224 --EGHTLGFPVTRTEDWF 239
G L P+ + + W
Sbjct: 99 KKSGVVLLNPIPKDKKWI 116
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
W+H ++N A +L GSFLVR S++SPG S+ ++ +RI
Sbjct: 7 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 56
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRI 193
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI
Sbjct: 11 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRI 56
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
W+H ++N A +L GSFLVR S++SPG S+ ++ +RI
Sbjct: 11 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 60
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRI 193
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI
Sbjct: 15 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRI 60
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV----- 113
W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 12 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 71
Query: 114 -------------RYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
R +G + F+ L A++ Y K ++ TL PV+R SRQ
Sbjct: 72 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSR-SRQ 122
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 149 RMSRQWKIAT-KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV--------- 198
R+SRQ +A +G H FLVR S SPGDY L N+++ + I
Sbjct: 16 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 75
Query: 199 ---------RYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRT 235
R +G + F+ L A++ Y K ++ TL PV+R+
Sbjct: 76 QPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSRS 120
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR 114
++ WFH + + +AV L G FLVR S PGDY L + +R+ +
Sbjct: 2 SLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH 61
Query: 115 YLMGGRTFEC-LDAVINRYRKEQ 136
+ F C L ++ Y K++
Sbjct: 62 LTIDEAVFFCNLMDMVEHYSKDK 84
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA 112
W+H ++N A +L GSFLVR S++SPG S+ ++ +RI +
Sbjct: 17 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 71
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMG 203
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI + Y+
Sbjct: 22 PVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSS 79
Query: 204 GRTFECLDAVINRYRKEQIVEG--HTLGFPVTRTEDWFSLAGVTP 246
F L +++ + + +G TL +P + + ++ GV+P
Sbjct: 80 ESRFNTLAELVHHH--STVADGLITTLHYPAPK-RNKPTVYGVSP 121
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 6 ELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
+L+F+KG+ + V+N GD WL AH TG+ G I + V D +W+
Sbjct: 19 DLSFKKGERLQIVNNTEGDWWL---AHSLTTGQTGYIPSNYVAPSDSI----QAEEWYFG 71
Query: 63 ECTKNDAVDMLVKA-GP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG- 119
+ T+ ++ +L+ P G+FLVR S+ + G Y L + + ++ +R L G
Sbjct: 72 KITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 131
Query: 120 -----RT-FECLDAVINRYRK 134
RT F L ++ Y K
Sbjct: 132 FYITSRTQFSSLQQLVAYYSK 152
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGG 204
PV+R Q ++ +G H FLVR S PGDY L N+++ + I R+ +G
Sbjct: 18 PVSRQEAQTRL--QGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD 75
Query: 205 RTFECLDAVINRYR 218
+ F+ L A++ Y+
Sbjct: 76 QEFDHLPALLEFYK 89
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLM 117
W+ ++ +A L G FLVR S PGDY L N+++ + I R+ +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 118 GGRTFECLDAVINRYR 133
G + F+ L A++ Y+
Sbjct: 74 GDQEFDHLPALLEFYK 89
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
D ++L F+KG+I + + + W W ++ G GMI VE L
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQW-WSARNKDGRVGMIPVPYVEKL 181
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV----- 113
W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61
Query: 114 -------------RYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
R +G + F+ L A++ Y K ++ TL PV+R
Sbjct: 62 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSR 109
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 149 RMSRQWKIAT-KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV--------- 198
R+SRQ +A +G H FLVR S SPGDY L N+++ + I
Sbjct: 6 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 65
Query: 199 ---------RYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 234
R +G + F+ L A++ Y K ++ TL PV+R
Sbjct: 66 QPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSR 109
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGG 204
PV+R Q ++ +G H FLVR S PGDY L N+++ + I R+ +G
Sbjct: 18 PVSRQEAQTRL--QGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD 75
Query: 205 RTFECLDAVINRYR 218
+ F+ L A++ Y+
Sbjct: 76 QEFDHLPALLEFYK 89
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLM 117
W+ ++ +A L G FLVR S PGDY L N+++ + I R+ +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 118 GGRTFECLDAVINRYR 133
G + F+ L A++ Y+
Sbjct: 74 GDQEFDHLPALLEFYK 89
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
D ++L F+KG+I + + + W W ++ G GMI VE L
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQW-WSARNKDGRVGMIPVPYVEKL 181
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D DE++F+ GD + +GW++ T RTG GM+ + VE
Sbjct: 16 DADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D DE++F+ GD + DGW++ T RTG GM+ + +E
Sbjct: 19 DEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGG 204
PV+R Q ++ +G H FLVR S PGDY L N+++ + I R+ +G
Sbjct: 25 PVSRQEAQTRL--QGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD 82
Query: 205 RTFECLDAVINRYRKEQIVEGHTLGFPVTR 234
+ F+ L A++ Y K ++ TL P R
Sbjct: 83 QEFDHLPALLEFY-KIHYLDTTTLIEPAPR 111
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLM 117
W+ ++ +A L G FLVR S PGDY L N+++ + I R+ +
Sbjct: 21 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 80
Query: 118 GGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
G + F+ L A++ Y K ++ TL P R
Sbjct: 81 GDQEFDHLPALLEFY-KIHYLDTTTLIEPAPR 111
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-------- 110
W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 13 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 72
Query: 111 ----------KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
R +G + F+ L A++ Y K ++ TL PV+R SRQ
Sbjct: 73 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSR-SRQ 123
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 149 RMSRQWKIAT-KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK------------ 195
R+SRQ +A +G H FLVR S SPGDY L N+++ + I
Sbjct: 17 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 76
Query: 196 ------KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRT 235
R +G + F+ L A++ Y K ++ TL PV+R+
Sbjct: 77 QPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSRS 121
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 147 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 188
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMG 118
WFH + + +AV L G FLVR S PGDY L + +R+ + +
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 119 GRTFEC-LDAVINRYRKEQ 136
F C L + Y K++
Sbjct: 67 EAVFFCNLXDXVEHYSKDK 85
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 68 DAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECL-- 125
+A D L+ GS+L+R S PG Y+L +Q + FR+ ++ +G + FE +
Sbjct: 61 EAADQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDG-KHFVGEKRFESIHD 119
Query: 126 ---DAVINRYRKEQIVE 139
D +I Y + + E
Sbjct: 120 LVTDGLITLYIETKAAE 136
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 224
S+L+R S PG Y+L +Q + FR+ ++ +G + FE + + + +
Sbjct: 73 SYLIRESQRQPGTYTLALRFGSQTRNFRLYYDG-KHFVGEKRFESIHDL--------VTD 123
Query: 225 GHTLGFPVTRTEDWFSLAGVTPIGE 249
G + T+ ++ + + PI E
Sbjct: 124 GLITLYIETKAAEYIAKMTINPIYE 148
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-------- 110
W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 15 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 74
Query: 111 ----------KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
R +G + F+ L A++ Y K ++ TL PV+R SRQ
Sbjct: 75 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSR-SRQ 125
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 149 RMSRQWKIAT-KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK------------ 195
R+SRQ +A +G H FLVR S SPGDY L N+++ + I
Sbjct: 19 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 78
Query: 196 ------KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRT 235
R +G + F+ L A++ Y K ++ TL PV+R+
Sbjct: 79 QPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSRS 123
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 149 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 190
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA 112
W+H +++ A +L GSFLVR S++SPG S+ ++ +RI A
Sbjct: 18 WYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTA 71
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA 197
PV+R + ++ +++ + SFLVR S++SPG S+ ++ +RI A
Sbjct: 22 PVSRSAAEYLLSSL--INGSFLVRESESSPGQLSISLRYEGRVYHYRINTTA 71
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 59 WFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRI-----EKKA 112
W H T++ A ++L + G GSFLVR S++ Y+L N + +RI +K
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 113 VRYLMG--GRTFECLDAVINRYRKEQIVEGHTLGFPV 147
V+ G R F LD +I Y+KE + L +PV
Sbjct: 72 VQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPV 108
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRI-----EKKAVRYL 201
+TR S+ ++ ++ SFLVR S++ Y+L N + +RI +K V+
Sbjct: 17 ITR-SKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQAS 75
Query: 202 MG--GRTFECLDAVINRYRKEQIVEGHTLGFPVTRTED 237
G R F LD +I Y+KE + L +PV E+
Sbjct: 76 EGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLEEE 113
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 149 RMSRQWKIAT-KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK------------ 195
R+SRQ +A +G H FLVR S SPGDY L N+++ + I
Sbjct: 17 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 76
Query: 196 ------KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRT 235
R +G + F+ L A++ Y K ++ TL PV+R+
Sbjct: 77 QPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSRS 121
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-------- 110
W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 13 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 72
Query: 111 ----------KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
R +G + F+ L A++ Y K ++ TL PV+R SRQ
Sbjct: 73 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFY-KIHYLDTTTLIEPVSR-SRQ 123
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 147 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 188
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 59 WFHPECTKNDAVDML-VKAGPGSFLVRPSDNSPGDYSLFFHINN---------QIQRFRI 108
W+H + A +L K P +FLVR S + PGD+ L + ++ ++
Sbjct: 8 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 109 EKKAVRYLMGG-RTFECLDAVINRYRKEQIVEG 140
+ RY +GG TF+ L ++ ++K I E
Sbjct: 68 MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEA 100
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 165 SFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLMGG-RTFECLDAVI 214
+FLVR S + PGD+ L + ++ ++ + RY +GG TF+ L ++
Sbjct: 30 TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV 89
Query: 215 NRYRKEQIVEG 225
++K I E
Sbjct: 90 EHFKKTGIEEA 100
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 59 WFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++++AV L G G+FL+R S+ DY L ++ ++I ++A
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRA---- 59
Query: 117 MGGR-------TFECLDAVINRYRKEQIVEGHTLGFPVTR 149
GGR +F L ++N +R + + G L P +
Sbjct: 60 -GGRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98
Score = 34.7 bits (78), Expect = 0.094, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR- 205
++R ++ +G+ +FL+R S+ DY L ++ ++I ++A GGR
Sbjct: 9 ISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRA-----GGRL 63
Query: 206 ------TFECLDAVINRYRKEQIVEGHTLGFPVTRTE 236
+F L ++N +R + + G L P + E
Sbjct: 64 HLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRKHE 100
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 57 FDWFHPECTKNDAVDMLVKAGP---GSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
+ WFH ++ A +++ GP G F++R S+ PG+ L F+ + + R+
Sbjct: 11 YPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLS 66
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 57 FDWFHPECTKNDAVDMLVKAGP---GSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
+ WFH ++ A +++ GP G F++R S+ PG+ L F+ + + R+
Sbjct: 11 YPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLS 66
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 58 DWFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY 115
+WF ++ DA L+ G GSF++R S+ + G YSL + Q ++ +R
Sbjct: 5 EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT 64
Query: 116 LMGG-------RTFECLDAVINRYRK 134
L G TF L +++ Y+K
Sbjct: 65 LDNGGFYISPRSTFSTLQELVDHYKK 90
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-- 204
++R + ++ G+ SF++R S+ + G YSL + Q ++ +R L G
Sbjct: 11 ISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGF 70
Query: 205 -----RTFECLDAVINRYRK 219
TF L +++ Y+K
Sbjct: 71 YISPRSTFSTLQELVDHYKK 90
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
+LTF+KG+I V + DGW W+ G +G++ R +E E
Sbjct: 26 DLTFKKGEILLVIEKKPDGW-WIAKDAKGNEGLVPRTYLEPYSE 68
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 53 PNTVFDWFHPECTKNDAVDMLVKAGPGS---FLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
P + + WFH ++ A ++++ G GS FLVR S+ G+ L F+ + + R+
Sbjct: 5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64
Query: 110 KKA 112
A
Sbjct: 65 LNA 67
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 59 WFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
WFH + ++++A ++++ G G FLVR S ++P + L +I+ F+I
Sbjct: 28 WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQI 79
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 59 WFHPECTKNDAVDMLV--KAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK--KAVR 114
WF + DA L+ + G+FL+R S++ GD+SL ++ +RI + +
Sbjct: 18 WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGF 77
Query: 115 YLMGGRTFECLDAVINRY 132
+L + F L+ +N Y
Sbjct: 78 FLTRRKVFSTLNEFVNYY 95
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEK--KAVRYLMGGRTFECLDAVINRY 217
+FL+R S++ GD+SL ++ +RI + + +L + F L+ +N Y
Sbjct: 41 AFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYY 95
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 2 PDTDELTFQKGDIFFVHN-ELGDGWLWVTAHRTGEQGMIFRDLVEDL-DETIDP 53
P +ELT +G+I V N +G GWL + GEQG++ D VE L ++ DP
Sbjct: 22 PGNNELTVTEGEIITVTNPNVGGGWL-EGKNNKGEQGLVPTDYVEILPNDGKDP 74
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
ELT QKGDI ++H E+ WL H G G+ + VE L
Sbjct: 23 ELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVEVL 62
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
ELT QKGDI ++H E+ WL H G G+ + VE L
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVEVL 56
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR S GDY+L + +I + +Y
Sbjct: 12 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYG 71
Query: 116 LMGGRTFECLDAVINRYRKEQIVE 139
TF + +IN YR E + +
Sbjct: 72 FSDSLTFNSVVELINHYRNESLAQ 95
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
DEL+F++GDI V NE D W A G+ G I ++ +E
Sbjct: 15 DELSFKRGDILKVLNEESDQ-NWYKAELNGKDGFIPKNYIE 54
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 58 DWFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFH-----INNQIQRFRIEK 110
+W+ + + DA L+ G G+FL+R S+ + G YSL + ++ ++I K
Sbjct: 6 EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 65
Query: 111 --KAVRYLMGGRTFECLDAVINRY 132
Y+ FE L ++ Y
Sbjct: 66 LDNGGYYITTRAQFETLQQLVQHY 89
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR S GDY+L + +I + +Y
Sbjct: 12 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYG 71
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTR 149
TF + +IN YR E + + + L +PV++
Sbjct: 72 FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
Length = 98
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L
Sbjct: 3 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 62
Query: 117 MGG 119
G
Sbjct: 63 DNG 65
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 204
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 8 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 65
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINN 101
W+ P +++ A+ +L PG+FL+R S + G Y L +
Sbjct: 7 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVAT 49
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR S GDY+L + +I + +Y
Sbjct: 5 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYG 64
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTR 149
TF + +IN YR E + + + L +PV++
Sbjct: 65 FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 103
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI 99
W+ P +++ A+ +L PG+FL+R S + G Y L +
Sbjct: 22 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKV 62
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR S GDY+L + +I + +Y
Sbjct: 12 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYG 71
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTR 149
TF + +IN YR E + + + L +PV++
Sbjct: 72 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 65
Query: 117 MGG 119
G
Sbjct: 66 DNG 68
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 204
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 11 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 68
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 64
Query: 117 MGG 119
G
Sbjct: 65 DNG 67
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 204
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 10 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 67
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L
Sbjct: 9 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 68
Query: 117 MGG 119
G
Sbjct: 69 DNG 71
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 204
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 14 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 71
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L
Sbjct: 10 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 69
Query: 117 MGG 119
G
Sbjct: 70 DNG 72
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 204
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 15 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 72
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 60 FHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 119
FH ++ A D L+ G++++R S PG Y+L NQ +R+ ++ +G
Sbjct: 58 FHGIISREQA-DELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDG-KHFVGE 115
Query: 120 RTFECLDAVI 129
+ FE + ++
Sbjct: 116 KRFESIHDLV 125
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 150 MSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFEC 209
+SR+ G ++++R S PG Y+L NQ +R+ ++ +G + FE
Sbjct: 62 ISREQADELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDG-KHFVGEKRFES 120
Query: 210 LDAVINRYRKEQIVEGHTLGFPVTRTEDWFSLAGVTPIGE 249
+ + + +G + T+ ++ S PI E
Sbjct: 121 IHDL--------VTDGLITLYIETKAAEYISKMTTNPIYE 152
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 54 NTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
+ V +WFH ++ DA ++L GSFL+R S + G Y+L + + F ++
Sbjct: 13 DGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVK 67
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R L
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 63
Query: 117 MGG 119
G
Sbjct: 64 DNG 66
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 147 VTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 204
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R L G
Sbjct: 9 LSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 66
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
DEL+F++GDI V NE D W A G+ G I ++ +E
Sbjct: 24 DELSFKRGDILKVLNEECDQ-NWYKAELNGKDGFIPKNYIE 63
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 31.6 bits (70), Expect = 0.68, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
DELTF++GD VH + GW W G++G + + V+D+
Sbjct: 19 DELTFKEGDTIIVHQKDPAGW-W-EGELNGKRGWVPANYVQDI 59
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
DELTF++GD VH + GW W G++G + + V+D+
Sbjct: 18 DELTFKEGDTIIVHQKDPAGW-W-EGELNGKRGWVPANYVQDI 58
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide
Length = 103
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
++H TK + +L+K G G+FL+R S++ PG L + +RI
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRI 55
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 3 DTDELTFQKGD-IFFVHNELGDGWLWVTAHRTGEQGMI 39
D DE+T GD I V + G GW + TGE G++
Sbjct: 14 DDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLV 51
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR S GDY+L + +I + +Y
Sbjct: 11 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYG 70
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTR 149
TF + +IN YR E + + + L +PV++
Sbjct: 71 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK 109
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR S GDY+L + +I + +Y
Sbjct: 11 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYG 70
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTR 149
TF + +IN YR E + + + L +PV++
Sbjct: 71 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK 109
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAH-RTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
EL F+ GD+ F+ + + WL T TG + F +++D E DP ++ E
Sbjct: 190 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYED 249
Query: 65 TKNDAVDMLVK 75
T + D+ V+
Sbjct: 250 TISTIKDIAVE 260
>pdb|3KEZ|A Chain A, Crystal Structure Of Putative Sugar Binding Protein
(Yp_001299726.1) From Bacteroides Vulgatus Atcc 8482 At
1.90 A Resolution
pdb|3KEZ|B Chain B, Crystal Structure Of Putative Sugar Binding Protein
(Yp_001299726.1) From Bacteroides Vulgatus Atcc 8482 At
1.90 A Resolution
Length = 461
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 127 AVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINN 186
A +N+Y+ +Q P+ R+S + A + + V+ DN+ ++N+
Sbjct: 314 AYVNKYQPQQGENITDANIPLIRLSEAYLNAAEAA------VQTGDNAKA----VKYLNS 363
Query: 187 QIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGH 226
+QR E + G+T L+ V++ RKE + EGH
Sbjct: 364 IVQRANPENS-----VEGKTL-TLENVLDERRKELVAEGH 397
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 51 IDPNTVFDWFHPECTKNDAVDMLVKA-GP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
+D +W+ + T+ ++ +L+ A P G+FLVR S+ + G YSL + + +
Sbjct: 1 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNV 60
Query: 109 EKKAVRYLMGG------RT-FECLDAVINRYRK 134
+ +R L G RT F L ++ Y K
Sbjct: 61 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSK 93
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
DEL +KGDI +H + +GW W + G++G VE+L
Sbjct: 22 DELNLEKGDIVIIHEKKEEGW-WFGS-LNGKKGHFPAAYVEEL 62
>pdb|3SI2|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase In
Presence Of The Inhibitor Pq50 (Pdbd150)
Length = 327
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFR------IEKKAVRYL 116
E +ND +L++ PGS PG YS HI +IQR + ++ R
Sbjct: 30 EMWQNDLRPLLIERYPGS---------PGSYSARQHIMQRIQRLQAEWVVEVDTFLSRTP 80
Query: 117 MGGRTFECLDAVINRYRKEQIV 138
G R+F + + +N K +V
Sbjct: 81 YGYRSFSNIISTLNPEAKRHLV 102
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 127 AVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINN 186
A +N +Q+ EG T +S W+ + + L+ SPG YS HI
Sbjct: 12 AHLNSSSLQQVAEG-------TSISEMWQ-----NDLRPLLIERYPGSPGSYSARQHIMQ 59
Query: 187 QIQRFR------IEKKAVRYLMGGRTFECLDAVINRYRKEQIV 223
+IQR + ++ R G R+F + + +N K +V
Sbjct: 60 RIQRLQAEWVVEVDTFLSRTPYGYRSFSNIISTLNPEAKRHLV 102
>pdb|3SI1|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase
Length = 327
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFR------IEKKAVRYL 116
E +ND +L++ PGS PG YS HI +IQR + ++ R
Sbjct: 30 EMWQNDLRPLLIERYPGS---------PGSYSARQHIMQRIQRLQAEWVVEVDTFLSRTP 80
Query: 117 MGGRTFECLDAVINRYRKEQIV 138
G R+F + + +N K +V
Sbjct: 81 YGYRSFSNIISTLNPEAKRHLV 102
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 127 AVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINN 186
A +N +Q+ EG T +S W+ + + L+ SPG YS HI
Sbjct: 12 AHLNSSSLQQVAEG-------TSISEMWQ-----NDLRPLLIERYPGSPGSYSARQHIMQ 59
Query: 187 QIQRFR------IEKKAVRYLMGGRTFECLDAVINRYRKEQIV 223
+IQR + ++ R G R+F + + +N K +V
Sbjct: 60 RIQRLQAEWVVEVDTFLSRTPYGYRSFSNIISTLNPEAKRHLV 102
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSL 95
WFH + ++ +A +L G FLVR S +PG Y L
Sbjct: 9 WFHGKLSRREAEALLQLNG--DFLVRESTTTPGQYVL 43
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSL 95
WFH + ++ +A +L G FLVR S +PG Y L
Sbjct: 9 WFHGKLSRREAEALLQLNG--DFLVRESTTTPGQYVL 43
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 56 VFDWFHPECTKNDAVDMLVKA--GPGSFLVRPSDNSPGDYSLFFH-INNQ---IQRFRIE 109
V WF ++ DA L+ GSFL+R S+++ G +SL I Q ++ ++I
Sbjct: 11 VEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIR 70
Query: 110 K--KAVRYLMGGRTFECLDAVINRYRKE 135
Y+ TF L A++ Y K+
Sbjct: 71 SLDNGGYYISPRITFPTLQALVQHYSKK 98
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G + L +Q Q ++ +R L
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 117 MGG 119
G
Sbjct: 65 DNG 67
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/100 (17%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFR-IEKKAV 113
T + WF + ++L G++L+R +++ N++++ + +EK
Sbjct: 14 TAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNW 73
Query: 114 RYLMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVT 148
++ + F+ L ++ Y+ + E TL +P +
Sbjct: 74 IHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYS 113
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 59 WFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
WF ++ DA L+ G GSFL+R S+++ G + L +Q Q ++ +R L
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 117 MGG 119
G
Sbjct: 65 DNG 67
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
+ DEL GDI V E DGW W T R G++G + +E L
Sbjct: 21 NPDELDLSAGDILEVILEGEDGW-W-TVERNGQRGFVPGSYLEKL 63
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
DTDEL+F DI + E GW W T G+QG+
Sbjct: 18 DTDELSFNANDIIDIIKEDPSGW-W-TGRLRGKQGL 51
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 14 DDEDLPFKKGDILKIRDKPEEQW-WNAEDMDGKRGMIPVPYVE 55
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With A
Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 60 FHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMG 118
+H + ++ +L+ G GS+L+R S++ PG Y L + I +R+ + G
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET----G 62
Query: 119 GRTFECLDAVINRY 132
+ E V RY
Sbjct: 63 SWSAETAPGVHKRY 76
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFR-IEKKAV 113
T + WF + ++L G++L+R +++ N++++ + +EK
Sbjct: 20 TAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNW 79
Query: 114 RYLMGGRTFECLDAVINRYRKEQIVEGH-----TLGFP 146
++ + F+ L ++ Y+ + E TL +P
Sbjct: 80 IHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYP 117
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1TYZ|A Chain A, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|B Chain B, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|C Chain C, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|D Chain D, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TZ2|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZJ|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZK|A Chain A, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|B Chain B, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|C Chain C, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|D Chain D, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZM|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
Length = 338
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 328 VTEVDAKIKPVQHAEKIYATLRECREQVGLKK 359
V VDA KP Q E+I R+ E+VGL++
Sbjct: 219 VIGVDASAKPAQTREQITRIARQTAEKVGLER 250
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 60 FHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMG 118
+H + ++ +L+ G GS+L+R S++ PG Y L + I +R+ + G
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET----G 62
Query: 119 GRTFECLDAVINRY 132
+ E V RY
Sbjct: 63 SWSAETAPGVHKRY 76
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 27 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 68
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 PDTD-ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 44
P+ D EL +GDI F+ + G GWL + G++ + V
Sbjct: 16 PENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 PDTD-ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 44
P+ D EL +GDI F+ + G GWL + G++ + V
Sbjct: 12 PENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 16 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 57
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 49
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 16 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 51
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 49
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
DEL + GDI V + DGW T+ RT + G + V+ L
Sbjct: 21 DELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 13 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 54
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 55
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
DEL+F+KG I + N + D W A G++G+I + +E
Sbjct: 15 DELSFRKGQILKILN-MEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
DEL + GDI V + DGW T+ RT + G + V+ L
Sbjct: 21 DELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQI--QRFRIE 109
W+ T N+A + L +A G+FL+R D+S DY L + RIE
Sbjct: 19 WYWGSMTVNEAKEKLKEAPEGTFLIR--DSSHSDYLLTISVKTSAGPTNLRIE 69
>pdb|1RLF|A Chain A, Structure Determination Of The Ras-Binding Domain Of The
Ral-Specific Guanine Nucleotide Exchange Factor Rlf,
Nmr, 10 Structures
Length = 90
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 153 QWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTF 207
Q ++ GS +KS LV D +P S NN+ E + V+ L G R
Sbjct: 11 QMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPGDREL 65
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 30 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 15 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 58
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 20 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 30 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 19 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 20 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 26/101 (25%)
Query: 256 KFRYSH-----DLVMPSEEYSPLQQLLLESDLAVVKALADVCHGDRNRL------ASSLL 304
+FR S DL + +Y P QL+LESDL G+R RL S L
Sbjct: 984 EFRLSQGDVYKDLRLRGYDYGPFFQLVLESDL----------EGNRGRLQWNDSWVSFLD 1033
Query: 305 RIFSLDVKETLPCSIFYAILFQTVTEVDAKIKPVQHAEKIY 345
+ + + ++ F ++ +I PV H +K+Y
Sbjct: 1034 AMLHMSILAPGQLGLYLPTRFTSI-----RIDPVTHRQKLY 1069
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 18 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 16 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 4 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPE 63
T++L+F+KG+ F + N W + TG+ G I + V D +W+ +
Sbjct: 41 TEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI----QAEEWYFGK 96
Query: 64 CTKNDAVDMLVKAGPGS 80
+ DA ++GP S
Sbjct: 97 MGRKDA-----ESGPSS 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,193,600
Number of Sequences: 62578
Number of extensions: 467641
Number of successful extensions: 1459
Number of sequences better than 100.0: 159
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 265
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)