Query psy13521
Match_columns 366
No_of_seqs 333 out of 2098
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:29:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1264|consensus 100.0 1.2E-30 2.7E-35 270.3 18.5 224 4-233 471-739 (1267)
2 KOG4226|consensus 100.0 1E-28 2.2E-33 231.0 10.6 135 3-138 204-363 (379)
3 KOG0790|consensus 99.9 2.9E-25 6.2E-30 219.4 15.2 176 56-232 3-215 (600)
4 KOG4278|consensus 99.9 7.2E-24 1.6E-28 217.2 11.3 143 3-151 103-248 (1157)
5 KOG0197|consensus 99.9 3.1E-24 6.8E-29 217.0 8.5 147 3-149 24-185 (468)
6 KOG4637|consensus 99.9 1.4E-22 3E-27 196.4 12.9 97 52-148 18-120 (464)
7 cd00173 SH2 Src homology 2 dom 99.8 1.5E-20 3.2E-25 151.2 11.2 90 58-147 1-94 (94)
8 smart00252 SH2 Src homology 2 99.8 1.1E-19 2.3E-24 144.1 10.1 81 57-137 1-83 (84)
9 PF00017 SH2: SH2 domain; Int 99.8 4.1E-19 8.9E-24 138.6 9.2 74 59-132 1-77 (77)
10 KOG2996|consensus 99.8 2.6E-18 5.5E-23 174.5 10.5 147 5-151 625-785 (865)
11 KOG3508|consensus 99.7 5.6E-21 1.2E-25 203.8 -14.4 319 1-320 174-649 (932)
12 KOG1264|consensus 99.7 4.1E-17 8.8E-22 170.6 9.2 101 49-150 640-741 (1267)
13 KOG4226|consensus 99.7 5.6E-17 1.2E-21 152.5 9.3 207 3-223 120-363 (379)
14 KOG3601|consensus 99.7 7.2E-18 1.6E-22 153.6 -0.7 126 4-139 14-141 (222)
15 KOG0790|consensus 99.6 2.8E-16 6E-21 156.1 8.3 94 55-148 108-216 (600)
16 KOG4792|consensus 99.6 7.2E-15 1.6E-19 135.2 7.9 101 51-152 5-113 (293)
17 KOG4637|consensus 99.2 1.1E-11 2.4E-16 121.1 5.7 113 38-151 312-432 (464)
18 cd00173 SH2 Src homology 2 dom 99.2 7.1E-11 1.5E-15 94.7 9.3 75 158-232 16-94 (94)
19 KOG0194|consensus 99.1 3E-10 6.6E-15 116.7 10.2 97 56-156 48-154 (474)
20 smart00252 SH2 Src homology 2 99.1 4.8E-10 1E-14 88.6 9.1 64 159-222 18-83 (84)
21 PF00017 SH2: SH2 domain; Int 99.1 5E-10 1.1E-14 87.1 7.8 60 158-217 16-77 (77)
22 KOG4278|consensus 99.0 1E-09 2.2E-14 114.2 11.1 82 157-239 168-263 (1157)
23 KOG0197|consensus 99.0 5.3E-10 1.2E-14 114.0 6.9 76 158-233 99-184 (468)
24 PF14604 SH3_9: Variant SH3 do 99.0 4.2E-10 9.1E-15 81.0 3.7 41 3-45 9-49 (49)
25 KOG1930|consensus 99.0 8.1E-10 1.8E-14 109.6 6.1 96 55-150 210-324 (483)
26 cd05137 RasGAP_CLA2_BUD2 CLA2/ 98.8 1.6E-09 3.4E-14 109.5 3.5 92 234-326 18-110 (395)
27 PF14633 SH2_2: SH2 domain; PD 98.8 5E-08 1.1E-12 91.3 12.9 161 58-219 39-218 (220)
28 PF00018 SH3_1: SH3 domain; I 98.8 7.2E-09 1.6E-13 73.9 3.8 39 3-41 10-48 (48)
29 PF07653 SH3_2: Variant SH3 do 98.7 1E-08 2.3E-13 75.2 3.5 43 2-46 11-54 (55)
30 KOG3751|consensus 98.5 3.2E-08 7E-13 100.9 2.2 97 52-148 514-618 (622)
31 cd05391 RasGAP_p120GAP p120GAP 98.5 1.1E-07 2.3E-12 93.7 3.7 57 268-324 1-57 (315)
32 smart00326 SH3 Src homology 3 98.4 4.4E-07 9.6E-12 65.0 4.7 43 3-46 15-57 (58)
33 cd00174 SH3 Src homology 3 dom 98.4 6.5E-07 1.4E-11 63.4 5.1 42 3-45 12-53 (54)
34 KOG2199|consensus 98.2 6.3E-07 1.4E-11 89.0 2.1 43 3-47 228-270 (462)
35 KOG2996|consensus 98.1 2.5E-06 5.4E-11 88.2 5.4 76 158-233 701-782 (865)
36 KOG2070|consensus 98.1 1.8E-06 4E-11 87.7 2.4 44 3-48 30-73 (661)
37 KOG4792|consensus 98.1 7.8E-06 1.7E-10 76.1 6.3 76 157-233 26-109 (293)
38 KOG1856|consensus 98.0 1.9E-05 4.1E-10 87.0 10.1 162 57-219 1108-1286(1299)
39 KOG3697|consensus 97.7 4.6E-05 1E-09 73.2 5.0 94 55-150 199-344 (345)
40 KOG3601|consensus 97.7 8.5E-06 1.9E-10 75.1 -0.1 103 122-224 27-141 (222)
41 cd05134 RasGAP_RASA3 RASA3 (or 97.5 3.6E-05 7.7E-10 75.7 1.6 55 268-323 1-61 (310)
42 smart00323 RasGAP GTPase-activ 97.4 0.00014 3E-09 72.4 4.4 80 248-327 4-85 (344)
43 cd05394 RasGAP_RASA2 RASA2 (or 97.2 0.00016 3.5E-09 71.1 2.3 55 268-323 1-61 (313)
44 KOG4225|consensus 97.1 0.0004 8.7E-09 70.2 3.6 44 3-48 243-286 (489)
45 KOG4348|consensus 96.9 0.00017 3.6E-09 72.8 -0.9 44 3-48 113-156 (627)
46 KOG0194|consensus 96.8 0.0043 9.2E-08 64.5 8.8 84 163-247 68-162 (474)
47 KOG3875|consensus 96.8 0.00045 9.8E-09 67.1 1.0 46 3-48 281-331 (362)
48 KOG2059|consensus 96.6 0.0019 4.2E-08 68.7 4.5 87 234-321 244-342 (800)
49 KOG1029|consensus 96.6 0.0012 2.6E-08 70.7 2.6 43 3-48 826-868 (1118)
50 KOG4348|consensus 96.0 0.0042 9.1E-08 63.0 2.7 44 3-48 274-319 (627)
51 cd05128 RasGAP_GAP1_like The G 96.0 0.0045 9.7E-08 61.3 2.9 60 269-328 2-67 (315)
52 KOG4566|consensus 95.8 0.015 3.3E-07 55.8 5.4 84 54-137 49-140 (258)
53 cd04013 C2_SynGAP_like C2 doma 95.7 0.0056 1.2E-07 54.0 2.1 34 234-267 104-146 (146)
54 KOG3523|consensus 95.5 0.003 6.5E-08 66.3 -0.7 46 3-48 621-666 (695)
55 KOG1930|consensus 95.2 0.016 3.4E-07 58.7 3.4 75 157-231 227-320 (483)
56 KOG0609|consensus 94.7 0.014 3.1E-07 60.7 1.5 42 6-47 237-281 (542)
57 KOG3557|consensus 94.7 0.012 2.5E-07 62.4 0.8 44 3-48 513-556 (721)
58 KOG3632|consensus 94.4 0.035 7.5E-07 61.3 3.8 44 3-48 1159-1203(1335)
59 KOG4575|consensus 94.2 0.037 8E-07 58.6 3.2 45 3-48 21-66 (874)
60 KOG1029|consensus 94.1 0.038 8.3E-07 59.7 3.1 43 3-48 919-962 (1118)
61 PF14633 SH2_2: SH2 domain; PD 94.0 0.055 1.2E-06 51.0 3.8 76 58-135 136-219 (220)
62 PF14603 hSH3: Helically-exten 93.1 0.098 2.1E-06 42.2 3.2 44 4-48 30-73 (89)
63 KOG3775|consensus 91.8 0.11 2.3E-06 52.2 2.3 46 3-48 275-320 (482)
64 cd05130 RasGAP_Neurofibromin N 91.4 0.14 3.1E-06 50.9 2.8 50 271-320 4-58 (329)
65 KOG4225|consensus 90.2 0.23 4.9E-06 50.8 3.0 45 4-48 318-362 (489)
66 KOG3508|consensus 89.9 0.0079 1.7E-07 66.2 -8.1 177 57-233 81-324 (932)
67 KOG4773|consensus 89.0 0.11 2.5E-06 51.5 -0.2 82 4-87 189-281 (386)
68 PF08239 SH3_3: Bacterial SH3 89.0 0.3 6.4E-06 35.0 2.1 36 9-45 19-55 (55)
69 cd05395 RasGAP_RASA4 Ras GTPas 88.9 0.35 7.5E-06 48.4 3.2 59 270-328 3-69 (337)
70 KOG2222|consensus 88.5 0.28 6E-06 50.8 2.2 44 3-48 561-604 (848)
71 cd08400 C2_Ras_p21A1 C2 domain 87.5 0.38 8.2E-06 40.7 2.1 30 234-263 95-126 (126)
72 smart00287 SH3b Bacterial SH3 87.1 0.98 2.1E-05 33.0 3.9 35 9-44 27-61 (63)
73 KOG1856|consensus 86.6 1.4 3E-05 50.1 6.3 79 57-136 1205-1288(1299)
74 KOG3751|consensus 86.0 0.36 7.7E-06 50.5 1.3 66 159-224 538-609 (622)
75 KOG0199|consensus 84.3 0.79 1.7E-05 50.0 3.0 43 3-45 387-430 (1039)
76 KOG3812|consensus 81.3 0.38 8.3E-06 47.9 -0.6 37 6-42 81-118 (475)
77 PRK10884 SH3 domain-containing 76.7 2.5 5.4E-05 39.5 3.2 39 8-47 49-88 (206)
78 cd05136 RasGAP_DAB2IP The DAB2 75.0 2.1 4.5E-05 42.4 2.4 55 268-322 1-56 (309)
79 cd05135 RasGAP_RASAL Ras GTPas 73.4 2.6 5.7E-05 42.1 2.7 56 270-325 3-67 (333)
80 cd04016 C2_Tollip C2 domain pr 68.3 3.6 7.8E-05 34.9 2.1 26 234-259 96-121 (121)
81 KOG3632|consensus 68.3 3.8 8.2E-05 46.1 2.7 43 3-47 1264-1307(1335)
82 KOG2528|consensus 63.6 4.7 0.0001 41.7 2.1 44 3-47 15-59 (490)
83 PF02762 Cbl_N3: CBL proto-onc 62.6 20 0.00044 28.4 5.0 42 59-100 4-47 (86)
84 cd01245 PH_RasGAP_CG5898 RAS G 60.4 15 0.00033 30.2 4.3 31 165-195 3-39 (98)
85 KOG0040|consensus 58.9 0.86 1.9E-05 52.9 -4.3 46 3-50 981-1026(2399)
86 PF06972 DUF1296: Protein of u 57.4 7 0.00015 29.4 1.6 12 340-351 20-31 (60)
87 PF06347 SH3_4: Bacterial SH3 57.3 16 0.00036 26.1 3.6 34 8-44 20-53 (55)
88 smart00743 Agenet Tudor-like d 53.4 18 0.00039 26.3 3.3 23 8-30 2-24 (61)
89 cd05392 RasGAP_Neurofibromin_l 52.7 12 0.00025 37.1 2.8 54 269-323 2-56 (323)
90 cd04519 RasGAP RasGAP: Ras-GTP 49.2 19 0.00041 34.5 3.7 78 270-347 3-86 (318)
91 cd01260 PH_CNK Connector enhan 49.2 40 0.00086 26.6 5.0 31 165-195 4-39 (96)
92 PRK13914 invasion associated s 49.0 20 0.00044 37.7 4.0 39 8-47 104-142 (481)
93 PF11302 DUF3104: Protein of u 48.8 23 0.0005 27.9 3.3 26 5-30 2-33 (75)
94 cd01247 PH_GPBP Goodpasture an 44.4 38 0.00083 27.0 4.2 32 164-195 2-34 (91)
95 COG2403 Predicted GTPase [Gene 43.0 5.3 0.00012 40.7 -1.2 44 263-306 64-108 (449)
96 KOG3667|consensus 42.0 37 0.00081 37.0 4.7 50 60-109 566-616 (682)
97 cd01251 PH_centaurin_alpha Cen 39.0 47 0.001 27.1 4.0 32 164-195 2-35 (103)
98 cd01233 Unc104 Unc-104 pleckst 38.4 56 0.0012 26.3 4.3 34 163-196 4-38 (100)
99 COG3323 Uncharacterized protei 36.5 20 0.00044 30.1 1.4 44 234-277 44-88 (109)
100 COG3103 SH3 domain protein [Si 35.7 41 0.00088 31.5 3.4 40 8-48 49-89 (205)
101 COG4716 Myosin-crossreactive a 35.0 16 0.00034 37.7 0.6 23 342-364 554-576 (587)
102 cd01235 PH_SETbf Set binding f 34.9 62 0.0013 25.5 4.0 30 165-194 3-35 (101)
103 cd08383 C2A_RasGAP C2 domain ( 32.0 32 0.0007 27.7 2.0 26 234-259 91-117 (117)
104 cd01244 PH_RasGAP_CG9209 RAS_G 30.5 1.2E+02 0.0026 24.7 5.1 32 164-195 4-40 (98)
105 cd01265 PH_PARIS-1 PARIS-1 ple 30.3 1.1E+02 0.0024 24.4 4.8 33 164-196 2-39 (95)
106 cd01238 PH_Tec Tec pleckstrin 30.3 74 0.0016 26.0 3.9 31 164-194 3-39 (106)
107 cd01252 PH_cytohesin Cytohesin 29.2 89 0.0019 26.1 4.2 32 164-195 3-35 (125)
108 cd01246 PH_oxysterol_bp Oxyste 27.6 1.2E+02 0.0025 23.0 4.4 32 164-195 2-34 (91)
109 COG3309 VapD Uncharacterized v 26.6 36 0.00079 27.8 1.3 43 320-363 1-43 (96)
110 COG2069 CdhD CO dehydrogenase/ 25.3 30 0.00064 34.4 0.7 26 279-304 211-236 (403)
111 cd04033 C2_NEDD4_NEDD4L C2 dom 25.0 40 0.00087 28.0 1.4 27 234-260 106-133 (133)
112 KOG3705|consensus 24.3 53 0.0011 33.9 2.2 45 3-47 522-566 (580)
113 cd04365 IlGF_relaxin_like IlGF 23.6 49 0.0011 24.5 1.5 14 283-296 8-21 (59)
114 smart00557 IG_FLMN Filamin-typ 23.6 73 0.0016 25.2 2.6 29 73-101 50-78 (93)
115 cd01241 PH_Akt Akt pleckstrin 23.5 1.5E+02 0.0032 24.0 4.4 32 163-194 3-36 (102)
116 cd04015 C2_plant_PLD C2 domain 23.4 58 0.0013 28.6 2.2 27 234-260 130-158 (158)
117 KOG3697|consensus 23.3 1.2E+02 0.0026 30.0 4.3 61 172-232 276-341 (345)
118 cd01250 PH_centaurin Centaurin 21.9 1.6E+02 0.0034 22.4 4.2 32 164-195 2-35 (94)
No 1
>KOG1264|consensus
Probab=99.97 E-value=1.2e-30 Score=270.27 Aligned_cols=224 Identities=24% Similarity=0.485 Sum_probs=180.4
Q ss_pred CCCCCCCCCCEEEEEecCCCCeeEEEeCCCC---------------cccceeccccccccCCCCCCCcccCcCCccc-HH
Q psy13521 4 TDELTFQKGDIFFVHNELGDGWLWVTAHRTG---------------EQGMIFRDLVEDLDETIDPNTVFDWFHPECT-KN 67 (366)
Q Consensus 4 ~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg---------------~~GlVPsnyV~~~~~~~~p~e~~~WyhG~Is-R~ 67 (366)
+.+.++++| ++++-+..+..|-...=..+. +.--+|.. ..++..-|-.+.||||++- |.
T Consensus 471 d~~nsvk~G-iLy~kd~vdheWt~h~fvlt~~kl~ys~e~~~~~n~ndee~~kd----~s~s~ElH~~E~WFHgkle~R~ 545 (1267)
T KOG1264|consen 471 DHKNSVKQG-ILYMKDPVDHEWTRHYFVLTDAKLSYSDEIEQTENPNDEEVPKD----ISPSTELHFGEKWFHGKLEGRT 545 (1267)
T ss_pred cchhhhhcc-eEEEecCCCCceeeeEEEEecceeEeehhccCcCCCCccccccc----CCcchhhccchhhhhcccccch
Confidence 345567777 567778778788543211121 11111111 0012233678899999998 99
Q ss_pred HHHHHHhcC----C--CCcEEEecCCCCCCceEEEEeecCeeEEEEEEe--CC---eEEecCCcccCCHHHHHHHhhhcC
Q psy13521 68 DAVDMLVKA----G--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK--KA---VRYLMGGRTFECLDAVINRYRKEQ 136 (366)
Q Consensus 68 eAE~lL~~~----~--~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~--~g---~~y~~~~~~F~SL~eLV~~Y~~~~ 136 (366)
+|+++|... | +|+||||+|++..|+|+||++.+|+|+|+||+. .+ .+|+.++..|+||.+||.||+++.
T Consensus 546 eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~vfdslY~LI~~Y~~~~ 625 (1267)
T KOG1264|consen 546 EAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLVFDSLYALIQHYRETH 625 (1267)
T ss_pred HHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchhHHHHHHHHHHHHhcc
Confidence 999999753 4 999999999999999999999999999999986 22 478999999999999999999998
Q ss_pred Ccc---ceeecCCccCCCcc----h-----------hhhhcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecCe
Q psy13521 137 IVE---GHTLGFPVTRMSRQ----W-----------KIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV 198 (366)
Q Consensus 137 l~l---~~~L~~Pv~~~~~~----~-----------~i~~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~~ 198 (366)
+.. ..+|+.|||.|.|+ | .+++.--.+|+||||.+ ..++.|++||..+++++||+|.+.|.
T Consensus 626 Lr~aeF~m~LtePvPqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~-~~~nsy~iSfr~~gkikHcRi~rdGr 704 (1267)
T KOG1264|consen 626 LRCAEFEMRLTEPVPQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKR-EGSNSYAISFRARGKIKHCRINRDGR 704 (1267)
T ss_pred ccccceEEEecCCCCCCCcccCCccccccccHHHHHHHHhhCccCcceEEEec-cCCceEEEEEEEcCcEeEEEEccCce
Confidence 864 56999999999876 4 11344446899999955 55889999999999999999999999
Q ss_pred EEEcCCCccCCHHHHHHHHHhcccccccccCCCCC
Q psy13521 199 RYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 233 (366)
Q Consensus 199 ~yi~~~~~F~sL~eLV~~Y~~~~i~~~~~L~~pv~ 233 (366)
.|+.+.+.|+||++||+||.++++..+.+|.+||.
T Consensus 705 ~fvl~t~~FesLv~lv~yY~k~~lyR~mkLr~PVn 739 (1267)
T KOG1264|consen 705 HFVLGTSAFESLVELVSYYEKHPLYRKMKLRYPVN 739 (1267)
T ss_pred EEEeccHHHHHHHHHHHHHhcChhhhcccccCcCC
Confidence 99999999999999999999999999999999987
No 2
>KOG4226|consensus
Probab=99.95 E-value=1e-28 Score=231.04 Aligned_cols=135 Identities=25% Similarity=0.518 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCEEEEEec--CCCCeeEEEeCCCCcccceeccccccccCCC----------C---------C---CCccc
Q psy13521 3 DTDELTFQKGDIFFVHNE--LGDGWLWVTAHRTGEQGMIFRDLVEDLDETI----------D---------P---NTVFD 58 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~--~d~dWw~~~~~~tg~~GlVPsnyV~~~~~~~----------~---------p---~e~~~ 58 (366)
+..||+|+|||++.|+++ .|++||.++ +..|+.|+||.|||....+.+ . + ++..|
T Consensus 204 ndeELsFeKGerleivd~Pe~DPdWwkar-n~~G~vGLVPrNYv~vl~d~~~ts~~~~~s~~pq~sgn~p~~sg~~ag~~ 282 (379)
T KOG4226|consen 204 NDEELSFEKGERLEIVDKPENDPDWWKAR-NARGQVGLVPRNYVVVLSDGPSTSKALHPSHAPQISGNGPSSSGRFAGRP 282 (379)
T ss_pred ChhhcccccCceeEeccCCCCCchHHhhc-ccCCccceeecceEEEeccCccccccCCccccccccCCCCCccccccCCc
Confidence 457999999999999997 478998765 788999999999998654211 1 1 46789
Q ss_pred CcCCcccHHHHHHHHhcCC-CCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCCeEEecCCcccCCHHHHHHHhhhcCC
Q psy13521 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQI 137 (366)
Q Consensus 59 WyhG~IsR~eAE~lL~~~~-~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~~y~~~~~~F~SL~eLV~~Y~~~~l 137 (366)
||+|+|+|.+||.+|...+ +|.||||+|+++||+|++|++..++-+||++...++.|++|++.|.++++||+||++.++
T Consensus 283 WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGqRkF~tmd~Lv~HY~kaPI 362 (379)
T KOG4226|consen 283 WYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQRKFHTMDELVEHYKKAPI 362 (379)
T ss_pred ceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEeccceeccHHHHHHhhhcCCc
Confidence 9999999999999998888 999999999999999999999999999999999899999999999999999999999887
Q ss_pred c
Q psy13521 138 V 138 (366)
Q Consensus 138 ~ 138 (366)
.
T Consensus 363 f 363 (379)
T KOG4226|consen 363 F 363 (379)
T ss_pred e
Confidence 4
No 3
>KOG0790|consensus
Probab=99.93 E-value=2.9e-25 Score=219.42 Aligned_cols=176 Identities=31% Similarity=0.604 Sum_probs=152.5
Q ss_pred cccCcCCcccHHHHHHHHhcCC-CCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCCeEE-ecCCcccCCHHHHHHHhh
Q psy13521 56 VFDWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYR 133 (366)
Q Consensus 56 ~~~WyhG~IsR~eAE~lL~~~~-~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~~y-~~~~~~F~SL~eLV~~Y~ 133 (366)
+..|||.+++..+||.||...+ +|+||.|.|+++||+|+||++.+++|.|.+|...+++| +.++..|.++.+||+||.
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyym 82 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYYM 82 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999877777 779999999999999999
Q ss_pred hcCC------ccceeecCCccCCCcc---h-----------hhh-hcCCCcceeEeecCCCCCCceEEEEEeCC------
Q psy13521 134 KEQI------VEGHTLGFPVTRMSRQ---W-----------KIA-TKGSCHKSFLVRPSDNSPGDYSLFFHINN------ 186 (366)
Q Consensus 134 ~~~l------~l~~~L~~Pv~~~~~~---~-----------~i~-~~g~~~G~FLVR~S~~~~g~y~LSfv~~~------ 186 (366)
+++. |....|++|+...+|+ | +++ .+| ++|+||||+|.+.||+|+||+..++
T Consensus 83 e~~~~lkekng~~ielK~pl~cAdptserWfHG~LsgkeAekLl~ekg-k~gsfLvReSqs~PGdfVlSvrTdd~~~~~~ 161 (600)
T KOG0790|consen 83 EHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLQEKG-KHGSFLVRESQSHPGDFVLSVRTDDKKESND 161 (600)
T ss_pred hhhHHHHhcCCCEEEecCCCccCCchhhhhhccCCCchhHHHHHHhcC-CCccEEEeccccCCCceEEEEEcCCcccCCC
Confidence 8773 3456899999877775 3 223 445 5899999999999999999966644
Q ss_pred ---eEEEEEEeecC-eEEEcCCCccCCHHHHHHHHHhccccccc----ccCCCC
Q psy13521 187 ---QIQRFRIEKKA-VRYLMGGRTFECLDAVINRYRKEQIVEGH----TLGFPV 232 (366)
Q Consensus 187 ---~V~HykI~~~~-~~yi~~~~~F~sL~eLV~~Y~~~~i~~~~----~L~~pv 232 (366)
+|-|-.|+..+ .|-+-++..|+||.+||+||+++++++.. .|.+|.
T Consensus 162 ~~~kVtHvmI~~q~~kydVGgge~F~sltdLidhykknpmvEt~gtvv~LrqP~ 215 (600)
T KOG0790|consen 162 SKLKVTHVMIRCQEGKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVVYLRQPL 215 (600)
T ss_pred CccceEEEEEEecccccccCCccccchHHHHHHHhccCchhhhcceeEEeeccc
Confidence 89999998776 55577778999999999999999999875 455663
No 4
>KOG4278|consensus
Probab=99.90 E-value=7.2e-24 Score=217.19 Aligned_cols=143 Identities=22% Similarity=0.408 Sum_probs=127.0
Q ss_pred CCCCCCCCCCCEEEEEecC-CCCeeEEEeCCCCcccceeccccccccCCCCCCCcccCcCCcccHHHHHHHHhcCCCCcE
Q psy13521 3 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSF 81 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~-d~dWw~~~~~~tg~~GlVPsnyV~~~~~~~~p~e~~~WyhG~IsR~eAE~lL~~~~~GsF 81 (366)
+...||+.|||.+.|+..+ +++|-.++. .+|+ ||||+||+++.. .++...||||.++|..||.+|...-.|+|
T Consensus 103 GdntLSitKGeklRvLGYN~NgEWcEart-KNGq-GWVPSNyItPvN----SLeKhsWYHGpvSRsaaEy~LsSgInGSF 176 (1157)
T KOG4278|consen 103 GDNTLSITKGEKLRVLGYNKNGEWCEART-KNGQ-GWVPSNYITPVN----SLEKHSWYHGPVSRSAAEYILSSGINGSF 176 (1157)
T ss_pred ccceeeeecCceEEEeeecCCCcceeecc-cCCC-cccccccccccc----chhhcccccCccccchhhhhhhcCcccce
Confidence 3567999999999999864 678877763 5566 999999999864 45778999999999999999976559999
Q ss_pred EEecCCCCCCceEEEEeecCeeEEEEEEe--CCeEEecCCcccCCHHHHHHHhhhcCCccceeecCCccCCC
Q psy13521 82 LVRPSDNSPGDYSLFFHINNQIQRFRIEK--KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMS 151 (366)
Q Consensus 82 LVR~S~s~pg~y~LSv~~~~~V~H~rI~~--~g~~y~~~~~~F~SL~eLV~~Y~~~~l~l~~~L~~Pv~~~~ 151 (366)
|||+|++.||.|++|+++.|+|.||||.. +|..|+.....|.||.|||.||+..++|+.+.|.+|.++..
T Consensus 177 LVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLittLhYPApK~n 248 (1157)
T KOG4278|consen 177 LVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITTLHYPAPKKN 248 (1157)
T ss_pred EEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEeeeccCccCC
Confidence 99999999999999999999999999987 47789988899999999999999999999999999998753
No 5
>KOG0197|consensus
Probab=99.90 E-value=3.1e-24 Score=217.02 Aligned_cols=147 Identities=24% Similarity=0.442 Sum_probs=129.4
Q ss_pred CCCCCCCCCCCE-EEEEecCCCCeeEEEeCCCCcccceeccccccccC--CCCCCCcccCcCCcccHHHHHHHHhcCC--
Q psy13521 3 DTDELTFQKGDI-FFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE--TIDPNTVFDWFHPECTKNDAVDMLVKAG-- 77 (366)
Q Consensus 3 ~~dELSF~kGD~-l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~~--~~~p~e~~~WyhG~IsR~eAE~lL~~~~-- 77 (366)
...||+|.+||+ +.+++..+++||++++..++..|+||+|||++... ....++.++||+|.|+|.+||+.|...+
T Consensus 24 ~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~ 103 (468)
T KOG0197|consen 24 TPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKISREEAERQLLAPENK 103 (468)
T ss_pred CccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhccccHHHHHHhhcCCCCC
Confidence 468999999999 89999999999999888799999999999997631 2345688999999999999997666555
Q ss_pred CCcEEEecCCCCCCceEEEEeecC------eeEEEEEEe-C-CeEE--ecCCcccCCHHHHHHHhhhcCCccceeecCCc
Q psy13521 78 PGSFLVRPSDNSPGDYSLFFHINN------QIQRFRIEK-K-AVRY--LMGGRTFECLDAVINRYRKEQIVEGHTLGFPV 147 (366)
Q Consensus 78 ~GsFLVR~S~s~pg~y~LSv~~~~------~V~H~rI~~-~-g~~y--~~~~~~F~SL~eLV~~Y~~~~l~l~~~L~~Pv 147 (366)
.|+||||+|++.+|+|+||++... .|+||+|.. + ++++ +.....|++|.+||+||+.++.+++.+|..||
T Consensus 104 ~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~~~~~~gl~~~l~~p~ 183 (468)
T KOG0197|consen 104 EGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNYYSKNADGLCTRLRDPC 183 (468)
T ss_pred ccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhhhccCcchhhcccCch
Confidence 699999999999999999999865 899999987 3 4455 66778999999999999999999999999999
Q ss_pred cC
Q psy13521 148 TR 149 (366)
Q Consensus 148 ~~ 149 (366)
..
T Consensus 184 ~~ 185 (468)
T KOG0197|consen 184 SK 185 (468)
T ss_pred hc
Confidence 75
No 6
>KOG4637|consensus
Probab=99.88 E-value=1.4e-22 Score=196.35 Aligned_cols=97 Identities=26% Similarity=0.466 Sum_probs=86.7
Q ss_pred CCCCcccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCCeEE-ecCCcccCCHHHHHH
Q psy13521 52 DPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVIN 130 (366)
Q Consensus 52 ~p~e~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~~y-~~~~~~F~SL~eLV~ 130 (366)
+++...+||||+|||+++.+.|.+.+||+||||+-.+.+|+|+|+++.++.++-++|...+|.| +.+.-.|+|+.+||+
T Consensus 18 ~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn 97 (464)
T KOG4637|consen 18 DELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELIN 97 (464)
T ss_pred hhhhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHH
Confidence 3456789999999999999999999999999999888899999999999999999998754444 778899999999999
Q ss_pred HhhhcCCc-----cceeecCCcc
Q psy13521 131 RYRKEQIV-----EGHTLGFPVT 148 (366)
Q Consensus 131 ~Y~~~~l~-----l~~~L~~Pv~ 148 (366)
||+++++. +..+|.+||.
T Consensus 98 ~yr~~SL~~yN~~LDvrLlyPVs 120 (464)
T KOG4637|consen 98 HYRNESLAQYNPKLDVRLLYPVS 120 (464)
T ss_pred HHhhhHHHhhCcccceeeechHH
Confidence 99998875 5789999994
No 7
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.84 E-value=1.5e-20 Score=151.23 Aligned_cols=90 Identities=38% Similarity=0.756 Sum_probs=81.1
Q ss_pred cCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEeC-CeEEecC-CcccCCHHHHHHHhhhc
Q psy13521 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMG-GRTFECLDAVINRYRKE 135 (366)
Q Consensus 58 ~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~-g~~y~~~-~~~F~SL~eLV~~Y~~~ 135 (366)
+||||.|+|++||++|.+.++|+||||.|.+.++.|+||++.+++++||+|... +++++.. +..|+||.|||+||+.+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~ 80 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN 80 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence 699999999999999998779999999999889999999999999999999884 4555443 89999999999999999
Q ss_pred C--CccceeecCCc
Q psy13521 136 Q--IVEGHTLGFPV 147 (366)
Q Consensus 136 ~--l~l~~~L~~Pv 147 (366)
+ .++++.|+.|+
T Consensus 81 ~~~~~~~~~L~~p~ 94 (94)
T cd00173 81 PLSDGLGVKLRYPV 94 (94)
T ss_pred ccCCCcccEeCCcC
Confidence 8 67788999886
No 8
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.81 E-value=1.1e-19 Score=144.05 Aligned_cols=81 Identities=32% Similarity=0.732 Sum_probs=72.7
Q ss_pred ccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCC-eEE-ecCCcccCCHHHHHHHhhh
Q psy13521 57 FDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRY-LMGGRTFECLDAVINRYRK 134 (366)
Q Consensus 57 ~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g-~~y-~~~~~~F~SL~eLV~~Y~~ 134 (366)
++||||.|+|++||++|.+.++|+||||.|++.+|.|+||++.++.++||+|...+ +.| +.+...|+||.+||+||+.
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~ 80 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK 80 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence 48999999999999999987799999999998899999999999999999998843 445 5555999999999999998
Q ss_pred cCC
Q psy13521 135 EQI 137 (366)
Q Consensus 135 ~~l 137 (366)
+++
T Consensus 81 ~~~ 83 (84)
T smart00252 81 NSL 83 (84)
T ss_pred CCC
Confidence 765
No 9
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.79 E-value=4.1e-19 Score=138.55 Aligned_cols=74 Identities=32% Similarity=0.744 Sum_probs=68.0
Q ss_pred CcCCcccHHHHHHHHhc-CCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEe-CCe-EEecCCcccCCHHHHHHHh
Q psy13521 59 WFHPECTKNDAVDMLVK-AGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAV-RYLMGGRTFECLDAVINRY 132 (366)
Q Consensus 59 WyhG~IsR~eAE~lL~~-~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~-~g~-~y~~~~~~F~SL~eLV~~Y 132 (366)
||||.|+|++||++|++ .++|+||||.|.+.+|.|+||++.+++++||+|.+ +++ +++.++..|+||.+||+||
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 99999999999999999 55999999999999999999999999999999988 344 5677778999999999998
No 10
>KOG2996|consensus
Probab=99.75 E-value=2.6e-18 Score=174.49 Aligned_cols=147 Identities=20% Similarity=0.349 Sum_probs=126.0
Q ss_pred CCCCCCCCCEEEEEecC-CCCeeEEEeCCCCcccceeccccccccCCC-------CCCCcccCcCCcccHHHHHHHHhcC
Q psy13521 5 DELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMIFRDLVEDLDETI-------DPNTVFDWFHPECTKNDAVDMLVKA 76 (366)
Q Consensus 5 dELSF~kGD~l~Il~~~-d~dWw~~~~~~tg~~GlVPsnyV~~~~~~~-------~p~e~~~WyhG~IsR~eAE~lL~~~ 76 (366)
.-|.++.||++..+..+ +..||.++...++++|++|++-|.+..... -.....+||.|.|.|..||..|.+.
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG~MERaqaes~Lk~~ 704 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAGEMERAQAESTLKNR 704 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcchHhhhhhhhHhhcC
Confidence 46889999999987653 568999999999999999999999764211 1135679999999999999999999
Q ss_pred CCCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCCe-EEecCCcccCCHHHHHHHhhhcCCc-----cceeecCCccCC
Q psy13521 77 GPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV-----EGHTLGFPVTRM 150 (366)
Q Consensus 77 ~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~-~y~~~~~~F~SL~eLV~~Y~~~~l~-----l~~~L~~Pv~~~ 150 (366)
++|+||||.+....+.|++|+++++.|+|++|..++| +++.+...|.|+.|||+||+.+++. +.++|++|...+
T Consensus 705 ~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~Pyke~ 784 (865)
T KOG2996|consen 705 PNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFPYKEP 784 (865)
T ss_pred CCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCCCcCh
Confidence 9999999999878889999999999999999988544 5578889999999999999999985 567999999754
Q ss_pred C
Q psy13521 151 S 151 (366)
Q Consensus 151 ~ 151 (366)
.
T Consensus 785 e 785 (865)
T KOG2996|consen 785 E 785 (865)
T ss_pred h
Confidence 3
No 11
>KOG3508|consensus
Probab=99.73 E-value=5.6e-21 Score=203.78 Aligned_cols=319 Identities=31% Similarity=0.362 Sum_probs=224.1
Q ss_pred CCCCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccccCCCCCCCcccCcCCcccHHHHHHHHhcCC-CC
Q psy13521 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAG-PG 79 (366)
Q Consensus 1 ~p~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~~~~~p~e~~~WyhG~IsR~eAE~lL~~~~-~G 79 (366)
+|.+++++|.+|+.+.+.++..+.|.|+...++++.|.+-...+.....+.+++....|+|++|...+|.+.|...+ .+
T Consensus 174 ~~~n~~l~~~~~~~f~~~~~~~d~w~~v~t~~~~e~~~i~~s~~~~~~~~~~~~~~ar~q~i~i~~~e~y~~~~e~~~~~ 253 (932)
T KOG3508|consen 174 KPTNDEIGFVKGDEFPVHRDLEDGWYWVTTSRTDEGGSIIASLVGGKSESPDPRIKARWQSINILPMEAYDELAETGTYN 253 (932)
T ss_pred cCcccccccccchhheecccccceeEEeeccccccCCcccccccccccCCCCccccccccccccCchHHHHHHHHHhccc
Confidence 58899999999999999999889999999999999999888888776667778889999999999999999999887 66
Q ss_pred cEEEecCCCCCCceEEEEeecCeeEEEEEEeC-CeEEecCCcccCCHHH-HHHHhhhcCCccceeecCCccCCCcch---
Q psy13521 80 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDA-VINRYRKEQIVEGHTLGFPVTRMSRQW--- 154 (366)
Q Consensus 80 sFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~-g~~y~~~~~~F~SL~e-LV~~Y~~~~l~l~~~L~~Pv~~~~~~~--- 154 (366)
.|++|.+...+++|.+-..-.+.+.|+.+... ...|+.+...++.+.. -++||......+.+.+..|+.+.....
T Consensus 254 y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~ak~fl~Dl~~~e~~r~~~idhlifrentlatka~ep~mklv~q~yl~ 333 (932)
T KOG3508|consen 254 YFLLCPVLNPPLDVSLKEELANALVRVLISTGRAKQFLMDLRMKEVLRLGDIDHLIFRENTLATKAIEPYMKLVAQDYLQ 333 (932)
T ss_pred eeeeecccCCCcchhHHHHHHHHHHHHHHhcchHHHHhhcchhHhhhhccchhhhhhhhhhhhhhhhhHHHHhhHHHHHH
Confidence 99999999888988777666778888888774 5678888888888877 788888877777777777776544321
Q ss_pred -----hh-----------------hhcCCCcceeEeecC-----------------------------CCCCCceEEEEE
Q psy13521 155 -----KI-----------------ATKGSCHKSFLVRPS-----------------------------DNSPGDYSLFFH 183 (366)
Q Consensus 155 -----~i-----------------~~~g~~~G~FLVR~S-----------------------------~~~~g~y~LSfv 183 (366)
+| ..++.+.-..+.|.+ .+..|--.++-.
T Consensus 334 dtl~eki~~iy~S~e~cevDp~k~~~s~l~~hq~~lK~~~e~~~~ki~~sl~~~p~el~~vf~s~r~r~~~rgridls~~ 413 (932)
T KOG3508|consen 334 DTLGEKIKAIYESTENCEVDPSKCSYSSLPKHQALLKKCCELAWKKIYNSLCVFPSELQLVFSSWRKRCKPRGRIDLSDR 413 (932)
T ss_pred HHHHHHHHHHHcccccceeccccccccchhhHHHHHhhhHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccccchhhhhh
Confidence 11 000000000111111 111111111100
Q ss_pred e--C---CeEEEEEEeec-----CeEEEcCCCccCCHHHHHHHHHh---------------------cccccccc-----
Q psy13521 184 I--N---NQIQRFRIEKK-----AVRYLMGGRTFECLDAVINRYRK---------------------EQIVEGHT----- 227 (366)
Q Consensus 184 ~--~---~~V~HykI~~~-----~~~yi~~~~~F~sL~eLV~~Y~~---------------------~~i~~~~~----- 227 (366)
. + ....=+.|-.. +..|.++. +=.+|.+|++-.+. .+..++|+
T Consensus 414 lv~aSLFlR~lCpaI~spslF~l~~eYp~~~-tsrtLtlIak~lQnlan~skfg~ke~~m~fmn~fleh~~~~mk~flk~ 492 (932)
T KOG3508|consen 414 LVSASLFLRFLCPAILSPSLFNLAQEYPSPT-TARTLTLIAKVLQNLANFSKFGGKEKRMRFMNEFLEHEWEAMKLFLKR 492 (932)
T ss_pred hhhHhhhcccccHHHhhHHHhhhhhhcCCCc-chHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000111000 12333322 22334333311111 11111111
Q ss_pred ------cCC-------------------------------------------C------C--------CccccceecCCC
Q psy13521 228 ------LGF-------------------------------------------P------V--------TRTEDWFSLAGV 244 (366)
Q Consensus 228 ------L~~-------------------------------------------p------v--------~~~d~W~~l~~~ 244 (366)
|.. | + ..++.|+++..+
T Consensus 493 isnp~~l~~~~~~~~~~dlg~Els~l~~~L~e~l~~l~~~~~q~~~~k~~plP~l~~v~~~Ls~~~~g~~tl~~~~l~~~ 572 (932)
T KOG3508|consen 493 ISNPSCLNNVKNAKGIVDLGLELSWLHEFLWEDLPPLSGLITQETRGKLGPLPRLADVSTVLSELELGQCTLRSFNLLNH 572 (932)
T ss_pred cCCcccccccchhhhhhhccccchHHHHHHHHhhcchhhhHHHhhccccCCCchhhHHHHHhcccccccccccccccccC
Confidence 111 0 0 037889999999
Q ss_pred Cc-cCccCcceeeeecccccccCcccchhhHhhhhcchhHHHHHhhhhhccccchhhhHHHHHhhhcccccCcchhh
Q psy13521 245 TP-IGEWGSLRLKFRYSHDLVMPSEEYSPLQQLLLESDLAVVKALADVCHGDRNRLASSLLRIFSLDVKETLPCSIF 320 (366)
Q Consensus 245 ~p-~~~~g~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (366)
+| ..+|||+|.+.+|.+++|||++|+.++.++.+..+||+|+|++..|++||.++|+.++|+|++++.|.++.-++
T Consensus 573 sP~~~Q~~s~~~~~~~~~~~i~P~~e~~~~~~~~~~~~l~~~~a~~~s~~~~r~~~~~~~~~s~~~~~lq~~~~~~~ 649 (932)
T KOG3508|consen 573 SPLMLQQGSSRPRNSYMQQLIMPRHENSPLYRLTLPQELHPVKALSLSCSTNRPSTASLLLRSFSQEKLQDLQTPPL 649 (932)
T ss_pred CcccccccccchhhhcccccCCCcccccchhhhcccccchhhHhhhhhhccCcccchhhhhhhhhhhhhhhcccccc
Confidence 99 58999999999999999999999999999999999999999999999999999999999999999999885544
No 12
>KOG1264|consensus
Probab=99.69 E-value=4.1e-17 Score=170.55 Aligned_cols=101 Identities=26% Similarity=0.576 Sum_probs=94.5
Q ss_pred CCCCCCCcccCcCCcccHHHHHHHHhcCC-CCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCCeEEecCCcccCCHHH
Q psy13521 49 ETIDPNTVFDWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDA 127 (366)
Q Consensus 49 ~~~~p~e~~~WyhG~IsR~eAE~lL~~~~-~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~~y~~~~~~F~SL~e 127 (366)
|++.||+++||||...+|++||++|+.-+ +|+|||| +...+..|+||++.+++|+||||.++|..|.++...|+||.+
T Consensus 640 Pqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~rdGr~fvl~t~~FesLv~ 718 (1267)
T KOG1264|consen 640 PQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRARGKIKHCRINRDGRHFVLGTSAFESLVE 718 (1267)
T ss_pred CCCCcccCCccccccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEEcCcEeEEEEccCceEEEeccHHHHHHHH
Confidence 45678999999999999999999999988 9999999 556778899999999999999999999999999999999999
Q ss_pred HHHHhhhcCCccceeecCCccCC
Q psy13521 128 VINRYRKEQIVEGHTLGFPVTRM 150 (366)
Q Consensus 128 LV~~Y~~~~l~l~~~L~~Pv~~~ 150 (366)
||+||.++++....+|++||...
T Consensus 719 lv~yY~k~~lyR~mkLr~PVnee 741 (1267)
T KOG1264|consen 719 LVSYYEKHPLYRKMKLRYPVNEE 741 (1267)
T ss_pred HHHHHhcChhhhcccccCcCCHH
Confidence 99999999999999999999743
No 13
>KOG4226|consensus
Probab=99.69 E-value=5.6e-17 Score=152.51 Aligned_cols=207 Identities=22% Similarity=0.350 Sum_probs=124.2
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccccCCCCCCCcccCcCCcccHHHHHHHHhcCCCCcEE
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFL 82 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~~~~~p~e~~~WyhG~IsR~eAE~lL~~~~~GsFL 82 (366)
.+|||++-||+.+.|++++.++||.+. .+|+.||+|+|||.+..++... ... +.+++.-|... ..++|+|.
T Consensus 120 ~eDELsLtKGtrv~vmEKssDGWWrG~--~ng~VGWFPSNYv~E~~ds~~g-d~~----s~~~~~~~A~a--~n~~~s~v 190 (379)
T KOG4226|consen 120 REDELSLTKGTRVTVMEKSSDGWWRGS--YNGQVGWFPSNYVTEEVDSAAG-DSP----SFLSLRKAASA--SNGQGSRV 190 (379)
T ss_pred cccccccccCcEEEEEEeccCcceecc--cCCeeccccccceehhcccccc-CCc----cceecchhhcc--cCCCCceE
Confidence 478999999999999999999999884 5899999999999976533211 111 12233222211 22367776
Q ss_pred Eec-----CCCCCCceEEEEeecCee----------EEEEEEeC-CeEEecCCcccCCHHHHHHHhhhcCCcc------c
Q psy13521 83 VRP-----SDNSPGDYSLFFHINNQI----------QRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIVE------G 140 (366)
Q Consensus 83 VR~-----S~s~pg~y~LSv~~~~~V----------~H~rI~~~-g~~y~~~~~~F~SL~eLV~~Y~~~~l~l------~ 140 (366)
+.- |.+...+--||+..+... ..++-+.. |..-+++... +..|.++-..+ .++ .
T Consensus 191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNY---v~vl~d~~~ts-~~~~~s~~pq 266 (379)
T KOG4226|consen 191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNY---VVVLSDGPSTS-KALHPSHAPQ 266 (379)
T ss_pred EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecce---EEEeccCcccc-ccCCcccccc
Confidence 552 222223334555543322 12222111 1111111111 01111111000 000 0
Q ss_pred eeecCCccC---CCcch---hh-------hh--cCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecCeEEEcCCC
Q psy13521 141 HTLGFPVTR---MSRQW---KI-------AT--KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR 205 (366)
Q Consensus 141 ~~L~~Pv~~---~~~~~---~i-------~~--~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~~~yi~~~~ 205 (366)
+.-..|.+. ....| .| ++ .| ..|.||||+|+++||+|+.|+...+.-+||+++..++.|..+++
T Consensus 267 ~sgn~p~~sg~~ag~~WYyG~itR~qae~~Ln~hG-~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGqR 345 (379)
T KOG4226|consen 267 ISGNGPSSSGRFAGRPWYYGNITRHQAECALNEHG-HEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQR 345 (379)
T ss_pred ccCCCCCccccccCCcceeccccHHHHHHHHhccC-ccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEeccc
Confidence 011112210 11224 12 23 44 47999999999999999999888999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcccc
Q psy13521 206 TFECLDAVINRYRKEQIV 223 (366)
Q Consensus 206 ~F~sL~eLV~~Y~~~~i~ 223 (366)
+|.++++||+||++.+|-
T Consensus 346 kF~tmd~Lv~HY~kaPIf 363 (379)
T KOG4226|consen 346 KFHTMDELVEHYKKAPIF 363 (379)
T ss_pred eeccHHHHHHhhhcCCce
Confidence 999999999999997763
No 14
>KOG3601|consensus
Probab=99.66 E-value=7.2e-18 Score=153.60 Aligned_cols=126 Identities=27% Similarity=0.473 Sum_probs=110.5
Q ss_pred CCCCCCCCCCEEEEEecCC-CCeeEEEeCCCCcccceeccccccccCCCCCCCcccCcCCcccHHHHHHHHhcCCCCcEE
Q psy13521 4 TDELTFQKGDIFFVHNELG-DGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFL 82 (366)
Q Consensus 4 ~dELSF~kGD~l~Il~~~d-~dWw~~~~~~tg~~GlVPsnyV~~~~~~~~p~e~~~WyhG~IsR~eAE~lL~~~~~GsFL 82 (366)
.+||+|.|||.++|++..| .+|. ++...|.+|++|.||+.- ...+||+|.++|..||++|+...+|+||
T Consensus 14 ~dELsFlkg~~lk~l~~~d~~nw~--~ael~g~~g~~P~Nai~~--------~~~~wve~~i~r~~ae~~l~~~~~G~fl 83 (222)
T KOG3601|consen 14 RDELSFLKGDNLKILNMEDDINWY--KAELDGPEGFIPKNAIRM--------KPHEWVEGLIPRPLAEDLLSKKRDGDFL 83 (222)
T ss_pred cccceeecCCceEecchHHhhhhh--hHhhcCccccCccccccc--------ccccceecccccchhhhhhhccCcchhh
Confidence 6899999999999998743 3564 347889999999999952 2368999999999999999996699999
Q ss_pred EecCCCCCCceEEEEeecCeeEEEEEEeC-CeEEecCCcccCCHHHHHHHhhhcCCcc
Q psy13521 83 VRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIVE 139 (366)
Q Consensus 83 VR~S~s~pg~y~LSv~~~~~V~H~rI~~~-g~~y~~~~~~F~SL~eLV~~Y~~~~l~l 139 (366)
+|.+++.||.|++|+++...|+||++.++ .+.|......|+|+.+|++||..++...
T Consensus 84 ~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r 141 (222)
T KOG3601|consen 84 IRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSR 141 (222)
T ss_pred hhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCccccccc
Confidence 99999999999999999999999999885 5678888889999999999999877654
No 15
>KOG0790|consensus
Probab=99.64 E-value=2.8e-16 Score=156.15 Aligned_cols=94 Identities=32% Similarity=0.603 Sum_probs=84.3
Q ss_pred CcccCcCCcccHHHHHHHHhcCC-CCcEEEecCCCCCCceEEEEeecC---------eeEEEEEEeCCeEEec-CCcccC
Q psy13521 55 TVFDWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLM-GGRTFE 123 (366)
Q Consensus 55 e~~~WyhG~IsR~eAE~lL~~~~-~GsFLVR~S~s~pg~y~LSv~~~~---------~V~H~rI~~~g~~y~~-~~~~F~ 123 (366)
.++.||||.++-.+||.||...+ +|+||||+|.+.||+|+||++.++ +|.|..|++.++.|-+ |+..|+
T Consensus 108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~ 187 (600)
T KOG0790|consen 108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFD 187 (600)
T ss_pred hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccc
Confidence 46789999999999999998888 999999999999999999999855 8999999998788844 568999
Q ss_pred CHHHHHHHhhhcCCcc----ceeecCCcc
Q psy13521 124 CLDAVINRYRKEQIVE----GHTLGFPVT 148 (366)
Q Consensus 124 SL~eLV~~Y~~~~l~l----~~~L~~Pv~ 148 (366)
||.+||+||+++++.. ...|++|+.
T Consensus 188 sltdLidhykknpmvEt~gtvv~LrqP~n 216 (600)
T KOG0790|consen 188 SLTDLVEHYKKNPMVETLGTVVYLRQPLN 216 (600)
T ss_pred hHHHHHHHhccCchhhhcceeEEeecccc
Confidence 9999999999999764 348899986
No 16
>KOG4792|consensus
Probab=99.56 E-value=7.2e-15 Score=135.25 Aligned_cols=101 Identities=29% Similarity=0.515 Sum_probs=88.6
Q ss_pred CCCCCcccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEe--C---C---eEEecCCccc
Q psy13521 51 IDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK--K---A---VRYLMGGRTF 122 (366)
Q Consensus 51 ~~p~e~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~--~---g---~~y~~~~~~F 122 (366)
.++.+...||+|.|||+||..+|+....|.||||+|.+.||+|+|||+-+.+|.||.|.+ . + ..|.++...|
T Consensus 5 FD~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgdQ~F 84 (293)
T KOG4792|consen 5 FDSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGDQEF 84 (293)
T ss_pred cChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeeccccc
Confidence 455677899999999999999999888999999999999999999999999999999987 2 2 2688999999
Q ss_pred CCHHHHHHHhhhcCCccceeecCCccCCCc
Q psy13521 123 ECLDAVINRYRKEQIVEGHTLGFPVTRMSR 152 (366)
Q Consensus 123 ~SL~eLV~~Y~~~~l~l~~~L~~Pv~~~~~ 152 (366)
++|+.|++||+-+-+ ..+.|..|.+++..
T Consensus 85 d~lPaLL~fykihyL-dtttLi~p~~r~~~ 113 (293)
T KOG4792|consen 85 DSLPALLEFYKIHYL-DTTTLIEPAKRSRQ 113 (293)
T ss_pred cchHHHHhheeEeee-cccccccccccccc
Confidence 999999999997755 45688899988765
No 17
>KOG4637|consensus
Probab=99.22 E-value=1.1e-11 Score=121.06 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=88.8
Q ss_pred ceeccccccccCCCCC-CCcccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEeC-CeE-
Q psy13521 38 MIFRDLVEDLDETIDP-NTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVR- 114 (366)
Q Consensus 38 lVPsnyV~~~~~~~~p-~e~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~-g~~- 114 (366)
+.|.+|.-.-.+...| +...-|+.+.+.|..||.+|...++|+||||+| +..|.|++||.+++.|+|+.|..+ .|+
T Consensus 312 ~t~~qy~l~et~~~~ph~~e~~w~~~~a~r~kAe~llrg~~dGtFLIR~s-s~~g~yalSV~~~~~V~HClIy~tatG~G 390 (464)
T KOG4637|consen 312 WTDAQYLLCETDENLPHNDEKTWRVRDANRDKAEELLRGKPDGTFLIRES-SKGGCYALSVVHDGEVKHCLIYQTATGFG 390 (464)
T ss_pred CCHHHHHHhcccccCcchhhhHhHHhhhhHHHHHHHhcCCCCCeEEEeec-cCCCceEEEEEECCceeeeEEeecccccc
Confidence 3455555433222233 345679999999999999999989999999996 677999999999999999999874 333
Q ss_pred EecCCcccCCHHHHHHHhhhcCC-----ccceeecCCccCCC
Q psy13521 115 YLMGGRTFECLDAVINRYRKEQI-----VEGHTLGFPVTRMS 151 (366)
Q Consensus 115 y~~~~~~F~SL~eLV~~Y~~~~l-----~l~~~L~~Pv~~~~ 151 (366)
|.-+...+.||.+||.||+++++ .+.++|.+|+-.+.
T Consensus 391 Fa~pyn~y~tlk~lV~hY~h~SLe~HnDal~ttLr~Pv~~~~ 432 (464)
T KOG4637|consen 391 FAEPYNLYSTLKELVLHYQHTSLEQHNDALTTTLRYPVFAQV 432 (464)
T ss_pred ccchhHHHHHHHHHHHHHhhhhHHhhccccccccccceeccc
Confidence 44556889999999999998775 46789999997553
No 18
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.21 E-value=7.1e-11 Score=94.71 Aligned_cols=75 Identities=39% Similarity=0.697 Sum_probs=63.5
Q ss_pred hcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecC-eEEEcC-CCccCCHHHHHHHHHhcc--cccccccCCCC
Q psy13521 158 TKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRYLMG-GRTFECLDAVINRYRKEQ--IVEGHTLGFPV 232 (366)
Q Consensus 158 ~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~-~~yi~~-~~~F~sL~eLV~~Y~~~~--i~~~~~L~~pv 232 (366)
+.+.++|+||||.|.+.++.|+||++.++.++||+|...+ ++++.. +..|+|+.|||+||+.++ ...++.|..||
T Consensus 16 L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~~~~~~~~~~L~~p~ 94 (94)
T cd00173 16 LKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKNPLSDGLGVKLRYPV 94 (94)
T ss_pred HhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhCccCCCcccEeCCcC
Confidence 3446789999999998899999998889999999997765 444444 789999999999999998 57788888875
No 19
>KOG0194|consensus
Probab=99.10 E-value=3e-10 Score=116.70 Aligned_cols=97 Identities=24% Similarity=0.524 Sum_probs=81.5
Q ss_pred cccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCc---e-EEEEeec--CeeEEEEEEeC-CeEEecCCcccCCHHHH
Q psy13521 56 VFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGD---Y-SLFFHIN--NQIQRFRIEKK-AVRYLMGGRTFECLDAV 128 (366)
Q Consensus 56 ~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~---y-~LSv~~~--~~V~H~rI~~~-g~~y~~~~~~F~SL~eL 128 (366)
.++||||-+.|++|+.+|.+ +|+||||.|+..+|. + .||+... .+++||.|.+. +.+|..+...|+|+.+|
T Consensus 48 ~~~~yHG~l~red~~~lL~~--~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~si~~l 125 (474)
T KOG0194|consen 48 ELPYYHGLLPREDAEKLLKN--DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPTISEL 125 (474)
T ss_pred cCccccccccHhHHHHHhCC--CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCcHHHH
Confidence 47999999999999999988 899999999877663 3 8999875 78999999985 44567778999999999
Q ss_pred HHHhhhcCCcc---ceeecCCccCCCcchhh
Q psy13521 129 INRYRKEQIVE---GHTLGFPVTRMSRQWKI 156 (366)
Q Consensus 129 V~~Y~~~~l~l---~~~L~~Pv~~~~~~~~i 156 (366)
|.||+.+.... ...|+.|++++. |.+
T Consensus 126 i~~~~~~~~~~~~~~~~L~~PI~r~~--Wel 154 (474)
T KOG0194|consen 126 VNYYKFSKLEITGKNFFLKRPIPRQK--WEL 154 (474)
T ss_pred HHHHHhcccceeccceeecccccccc--cEE
Confidence 99999987753 346999999765 643
No 20
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.10 E-value=4.8e-10 Score=88.56 Aligned_cols=64 Identities=34% Similarity=0.702 Sum_probs=55.6
Q ss_pred cCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecC--eEEEcCCCccCCHHHHHHHHHhccc
Q psy13521 159 KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 222 (366)
Q Consensus 159 ~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~--~~yi~~~~~F~sL~eLV~~Y~~~~i 222 (366)
...++|+||||.|++.++.|+||++.++.++||+|...+ .+++.+...|+||.|||+||+++++
T Consensus 18 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~~~~ 83 (84)
T smart00252 18 KNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQKNSL 83 (84)
T ss_pred hcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 344589999999998899999998889999999998765 5777767999999999999998764
No 21
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.07 E-value=5e-10 Score=87.13 Aligned_cols=60 Identities=32% Similarity=0.700 Sum_probs=53.1
Q ss_pred hcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecC-e-EEEcCCCccCCHHHHHHHH
Q psy13521 158 TKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-V-RYLMGGRTFECLDAVINRY 217 (366)
Q Consensus 158 ~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~-~-~yi~~~~~F~sL~eLV~~Y 217 (366)
..+.++|+||||.|.+.+|.|+||++.++.|+||+|...+ + +++..+..|+||.|||+||
T Consensus 16 ~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 16 MQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp HTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred HhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 3347899999999998899999998889999999997765 4 7888888999999999998
No 22
>KOG4278|consensus
Probab=99.05 E-value=1e-09 Score=114.16 Aligned_cols=82 Identities=26% Similarity=0.468 Sum_probs=73.4
Q ss_pred hhcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecC--eEEEcCCCccCCHHHHHHHHHhcccccccccCCCCC-
Q psy13521 157 ATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT- 233 (366)
Q Consensus 157 ~~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~--~~yi~~~~~F~sL~eLV~~Y~~~~i~~~~~L~~pv~- 233 (366)
+..|+ .|+||||+|++++|-|++|++.++.|+||+|...+ ..|+...+.|.+|.|||.|++..++++-+.|-+|.+
T Consensus 168 LsSgI-nGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLittLhYPApK 246 (1157)
T KOG4278|consen 168 LSSGI-NGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITTLHYPAPK 246 (1157)
T ss_pred hhcCc-ccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEeeeccCcc
Confidence 34454 79999999999999999998889999999997653 799999999999999999999999999999999855
Q ss_pred -----------ccccce
Q psy13521 234 -----------RTEDWF 239 (366)
Q Consensus 234 -----------~~d~W~ 239 (366)
..|+|+
T Consensus 247 ~nKptvygvSPn~DkWE 263 (1157)
T KOG4278|consen 247 KNKPTVYGVSPNADKWE 263 (1157)
T ss_pred CCCCceeeecCCcchhh
Confidence 478895
No 23
>KOG0197|consensus
Probab=99.00 E-value=5.3e-10 Score=114.05 Aligned_cols=76 Identities=26% Similarity=0.385 Sum_probs=66.6
Q ss_pred hcCCCcceeEeecCCCCCCceEEEEEeC------CeEEEEEEeecC--eEE--EcCCCccCCHHHHHHHHHhcccccccc
Q psy13521 158 TKGSCHKSFLVRPSDNSPGDYSLFFHIN------NQIQRFRIEKKA--VRY--LMGGRTFECLDAVINRYRKEQIVEGHT 227 (366)
Q Consensus 158 ~~g~~~G~FLVR~S~~~~g~y~LSfv~~------~~V~HykI~~~~--~~y--i~~~~~F~sL~eLV~~Y~~~~i~~~~~ 227 (366)
..++..|+||||+|++.+|+|++|+... ..|+||+|+..+ ++| +.....|++|.+||+||+.++.+.|++
T Consensus 99 ~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~~~~~~gl~~~ 178 (468)
T KOG0197|consen 99 APENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNYYSKNADGLCTR 178 (468)
T ss_pred CCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhhhccCcchhhc
Confidence 4566789999999999999999995443 389999998775 456 888899999999999999999999999
Q ss_pred cCCCCC
Q psy13521 228 LGFPVT 233 (366)
Q Consensus 228 L~~pv~ 233 (366)
|..||.
T Consensus 179 l~~p~~ 184 (468)
T KOG0197|consen 179 LRDPCS 184 (468)
T ss_pred ccCchh
Confidence 999985
No 24
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=98.98 E-value=4.2e-10 Score=81.05 Aligned_cols=41 Identities=41% Similarity=0.772 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~ 45 (366)
+++||||++||++.|+...+++||+++. +|+.|+||+|||+
T Consensus 9 ~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 9 DPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE 49 (49)
T ss_dssp STTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred CcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence 6789999999999999988999999974 8999999999984
No 25
>KOG1930|consensus
Probab=98.96 E-value=8.1e-10 Score=109.63 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=81.9
Q ss_pred CcccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEee---------------cCeeEEEEEEeC-CeEE---
Q psy13521 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI---------------NNQIQRFRIEKK-AVRY--- 115 (366)
Q Consensus 55 e~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~---------------~~~V~H~rI~~~-g~~y--- 115 (366)
.++-||..+|+|++|-.||++..+|+||||+|.+.+|.|-|.++. +.-|+||.|... .|.-
T Consensus 210 TSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkLKG 289 (483)
T KOG1930|consen 210 TSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKLKG 289 (483)
T ss_pred ccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceeccC
Confidence 467799999999999999999999999999999999999999885 134899999873 3332
Q ss_pred ecCCcccCCHHHHHHHhhhcCCccceeecCCccCC
Q psy13521 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRM 150 (366)
Q Consensus 116 ~~~~~~F~SL~eLV~~Y~~~~l~l~~~L~~Pv~~~ 150 (366)
+.+...|.||..||--|+-.++.+.|+|..|-..+
T Consensus 290 C~nEP~FGSLSALV~QHSIt~LALPckL~iP~rDp 324 (483)
T KOG1930|consen 290 CDNEPVFGSLSALVYQHSITALALPCKLVIPDRDP 324 (483)
T ss_pred CCCCCccchhHHHHhhccchhhhcceeEeccCCCc
Confidence 34568999999999888889999999999887655
No 26
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=98.84 E-value=1.6e-09 Score=109.53 Aligned_cols=92 Identities=20% Similarity=0.341 Sum_probs=84.9
Q ss_pred ccccceecCCCCccC-ccCcceeeeecccccccCcccchhhHhhhhcchhHHHHHhhhhhccccchhhhHHHHHhhhccc
Q psy13521 234 RTEDWFSLAGVTPIG-EWGSLRLKFRYSHDLVMPSEEYSPLQQLLLESDLAVVKALADVCHGDRNRLASSLLRIFSLDVK 312 (366)
Q Consensus 234 ~~d~W~~l~~~~p~~-~~g~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (366)
..+.|+|+-+.+..+ ++|++ |++||..+.|+|.++|++|.+||.+.++.++.+++++|.+|+.-+|++|++||.+.++
T Consensus 18 ~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~~VLp~~~Y~~l~~lL~~~~~~l~~~~~~~~~~~~~~la~~lv~if~~~g~ 96 (395)
T cd05137 18 DKETWLPIFDVDNKSVGEGLI-IKVSSEENFVLPSNNYEKLEELLHRFSLGLTTQISHDSPGKLRKLSEMFLNIFQVSGR 96 (395)
T ss_pred CceeeeccccCCCCCcCcceE-EEEEeeeceeccHHHHHHHHHHHhcCCHHHHHHHHHhChHhHHHHHHHHHHHHHhcCc
Confidence 478999999988864 89999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhhhhc
Q psy13521 313 ETLPCSIFYAILFQ 326 (366)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (366)
+..+++.+..-=++
T Consensus 97 ~~~~l~~L~~~Ei~ 110 (395)
T cd05137 97 ADEWLMALIEKEID 110 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877655443
No 27
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=98.83 E-value=5e-08 Score=91.27 Aligned_cols=161 Identities=17% Similarity=0.325 Sum_probs=104.1
Q ss_pred cCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEee-cCeeEEEEEEe-C-------CeEEecCCcccCCHHHH
Q psy13521 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEK-K-------AVRYLMGGRTFECLDAV 128 (366)
Q Consensus 58 ~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~-~~~V~H~rI~~-~-------g~~y~~~~~~F~SL~eL 128 (366)
|-|+ +++-.+|+++|.+...|.++||+|...+...+++++. ++..+|+.|.- + |....+++..|++|+||
T Consensus 39 P~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDLDEi 117 (220)
T PF14633_consen 39 PLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDLDEI 117 (220)
T ss_dssp TTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSHHHH
T ss_pred CCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCHHHH
Confidence 3355 8899999999998889999999997766668888875 56778999964 1 45677889999999999
Q ss_pred HHHhhhcCCcc-ceeecCCccCCCcc---hhhh--h-cCC-CcceeEeecCCCCCCceEEEEEe--CCeEEEEEEeecCe
Q psy13521 129 INRYRKEQIVE-GHTLGFPVTRMSRQ---WKIA--T-KGS-CHKSFLVRPSDNSPGDYSLFFHI--NNQIQRFRIEKKAV 198 (366)
Q Consensus 129 V~~Y~~~~l~l-~~~L~~Pv~~~~~~---~~i~--~-~g~-~~G~FLVR~S~~~~g~y~LSfv~--~~~V~HykI~~~~~ 198 (366)
|..|-+.-... ...+.++--+.... .+++ . ..+ ..-.|-+-.+...||.|.|+|+. +..+.|.-|.-...
T Consensus 118 i~r~V~pm~~~v~~~~~h~kf~~g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~ 197 (220)
T PF14633_consen 118 IARHVEPMARNVEEMMNHRKFKDGTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPD 197 (220)
T ss_dssp HHHCHHHHHHHHHHHHCSTTEESS-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecC
Confidence 99997643221 12233333332211 1221 1 111 12334444454679999999988 55666633544432
Q ss_pred EEEcCCCccCCHHHHHHHHHh
Q psy13521 199 RYLMGGRTFECLDAVINRYRK 219 (366)
Q Consensus 199 ~yi~~~~~F~sL~eLV~~Y~~ 219 (366)
-|...+..|+++++|+++.+.
T Consensus 198 Gf~~r~~~f~~~~~L~~~FK~ 218 (220)
T PF14633_consen 198 GFRFRKQVFPSLDRLINWFKK 218 (220)
T ss_dssp SEEETTEEESSHHHHHHHHHH
T ss_pred cEEEecccCCCHHHHHHHHhh
Confidence 244578999999999999875
No 28
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.76 E-value=7.2e-09 Score=73.92 Aligned_cols=39 Identities=44% Similarity=0.730 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceec
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFR 41 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPs 41 (366)
+++||+|++||.+.|+++.+++||+++...++++|+||+
T Consensus 10 ~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 10 DPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp STTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 578999999999999999888999999998899999996
No 29
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.71 E-value=1e-08 Score=75.17 Aligned_cols=43 Identities=37% Similarity=0.645 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCEEEEE-ecCCCCeeEEEeCCCCcccceecccccc
Q psy13521 2 PDTDELTFQKGDIFFVH-NELGDGWLWVTAHRTGEQGMIFRDLVED 46 (366)
Q Consensus 2 p~~dELSF~kGD~l~Il-~~~d~dWw~~~~~~tg~~GlVPsnyV~~ 46 (366)
+++++|+|++||++.|+ +..+++||+++. +|+.|+||+++|++
T Consensus 11 ~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 11 EDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEE 54 (55)
T ss_dssp SSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred CCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEE
Confidence 46789999999999999 777789999875 89999999999975
No 30
>KOG3751|consensus
Probab=98.53 E-value=3.2e-08 Score=100.87 Aligned_cols=97 Identities=21% Similarity=0.384 Sum_probs=83.6
Q ss_pred CCCCcccCcCCcccHHHHHHHHhcCC--CCcEEEecCCCCCCceEEEEeecCeeEEEEEEe---CCeEEec---CCcccC
Q psy13521 52 DPNTVFDWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK---KAVRYLM---GGRTFE 123 (366)
Q Consensus 52 ~p~e~~~WyhG~IsR~eAE~lL~~~~--~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~---~g~~y~~---~~~~F~ 123 (366)
..|..+.||||.|+|+|+..++.+.+ +|-|++|+|.++|..|++++.+..+|+||.|.. ++..|+. |...|.
T Consensus 514 ~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~s 593 (622)
T KOG3751|consen 514 AIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFS 593 (622)
T ss_pred hhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccc
Confidence 34788999999999999999998888 999999999999999999999999999999976 2444532 568999
Q ss_pred CHHHHHHHhhhcCCccceeecCCcc
Q psy13521 124 CLDAVINRYRKEQIVEGHTLGFPVT 148 (366)
Q Consensus 124 SL~eLV~~Y~~~~l~l~~~L~~Pv~ 148 (366)
++..|+++|+-+...+.+.|++-|.
T Consensus 594 d~~ql~~~~ql~k~~l~~al~~~~~ 618 (622)
T KOG3751|consen 594 DLIQLVEFYQLNKGVLPCALKHCCE 618 (622)
T ss_pred ccccccchhhcCCCcchHHHHHHHH
Confidence 9999999999987777777776554
No 31
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=98.46 E-value=1.1e-07 Score=93.71 Aligned_cols=57 Identities=44% Similarity=0.575 Sum_probs=53.7
Q ss_pred ccchhhHhhhhcchhHHHHHhhhhhccccchhhhHHHHHhhhcccccCcchhhhhhh
Q psy13521 268 EEYSPLQQLLLESDLAVVKALADVCHGDRNRLASSLLRIFSLDVKETLPCSIFYAIL 324 (366)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (366)
|+|++|++|+++++++++.||++||++|+..||++|++||.++++|..|++.+..-=
T Consensus 1 ~~y~~l~~ll~~~~~~~~~al~~vc~~d~~~la~~Lv~vF~~~~~~~~ll~~Li~~E 57 (315)
T cd05391 1 EEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFLHEKLESLLLRTLNDRE 57 (315)
T ss_pred CchHHHHHHHhCCChHHHHHHHHHChhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999988877643
No 32
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.39 E-value=4.4e-07 Score=65.04 Aligned_cols=43 Identities=42% Similarity=0.727 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVED 46 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~ 46 (366)
.+++|+|++||.+.|++..+++||+++... ++.|+||.+|+..
T Consensus 15 ~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v~~ 57 (58)
T smart00326 15 DPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVEE 57 (58)
T ss_pred CCCCCCCCCCCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHEEE
Confidence 568999999999999998788999997655 8999999999863
No 33
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.37 E-value=6.5e-07 Score=63.43 Aligned_cols=42 Identities=38% Similarity=0.591 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~ 45 (366)
.+++|+|++||.+.|++..+++||+++...+ +.|+||.+|+.
T Consensus 12 ~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~-~~G~vP~~~v~ 53 (54)
T cd00174 12 DPDELSFKKGDIIEVLEKSDDGWWEGRLLGG-KRGLFPSNYVE 53 (54)
T ss_pred CCCCCCCCCCCEEEEEEcCCCCeEEEEECCC-CEEEEccccCc
Confidence 4579999999999999987789999986554 89999999985
No 34
>KOG2199|consensus
Probab=98.19 E-value=6.3e-07 Score=89.01 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~ 47 (366)
+.+||||++||++.|+++++++||.+. ..+..|++|+|||...
T Consensus 228 E~nELsFkaGdIItVLd~s~~~WWKG~--~~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 228 EDNELSFKAGDIITVLDDSDPNWWKGE--NHRGIGLFPSNFVTAD 270 (462)
T ss_pred CCCccceecCcEEEEcccCCcchhccc--cCCcccccchhhhhhh
Confidence 578999999999999999999999984 4456899999999854
No 35
>KOG2996|consensus
Probab=98.15 E-value=2.5e-06 Score=88.19 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=66.4
Q ss_pred hcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecC-eEEEcCCCccCCHHHHHHHHHhccccccc-----ccCCC
Q psy13521 158 TKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRYLMGGRTFECLDAVINRYRKEQIVEGH-----TLGFP 231 (366)
Q Consensus 158 ~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~-~~yi~~~~~F~sL~eLV~~Y~~~~i~~~~-----~L~~p 231 (366)
+++.++|+||||.+.+..+.|++|...++.|+|.+|..++ -++|..+..|.||.|||+||+.+++-++- +|..|
T Consensus 701 Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~P 780 (865)
T KOG2996|consen 701 LKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFP 780 (865)
T ss_pred hhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCC
Confidence 6778899999999988889999998889999999998776 58899999999999999999998887663 56666
Q ss_pred CC
Q psy13521 232 VT 233 (366)
Q Consensus 232 v~ 233 (366)
-.
T Consensus 781 yk 782 (865)
T KOG2996|consen 781 YK 782 (865)
T ss_pred Cc
Confidence 44
No 36
>KOG2070|consensus
Probab=98.06 E-value=1.8e-06 Score=87.71 Aligned_cols=44 Identities=32% Similarity=0.557 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
++|||||.|||++.|-...+++||.+. .+|..||+|+|||..+.
T Consensus 30 NnDELsf~KgDvItVTq~eeGGWWEGT--lng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 30 NNDELSFSKGDVITVTQVEEGGWWEGT--LNGRTGWFPSNYVREIK 73 (661)
T ss_pred CCceeccccCCEEEEEEeccCcceecc--ccCccCccchHHHHHHh
Confidence 579999999999999999999999985 67889999999998665
No 37
>KOG4792|consensus
Probab=98.06 E-value=7.8e-06 Score=76.13 Aligned_cols=76 Identities=32% Similarity=0.530 Sum_probs=60.3
Q ss_pred hhcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecC--------eEEEcCCCccCCHHHHHHHHHhccccccccc
Q psy13521 157 ATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--------VRYLMGGRTFECLDAVINRYRKEQIVEGHTL 228 (366)
Q Consensus 157 ~~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~--------~~yi~~~~~F~sL~eLV~~Y~~~~i~~~~~L 228 (366)
++.+...|.||||+|.+.||+|+|++.-+..|.||-|.+.. ..|-.++..|++|..|++||+-+ .+....|
T Consensus 26 lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgdQ~Fd~lPaLL~fykih-yLdtttL 104 (293)
T KOG4792|consen 26 LLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGDQEFDSLPALLEFYKIH-YLDTTTL 104 (293)
T ss_pred HhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeeccccccchHHHHhheeEe-eeccccc
Confidence 35566789999999999999999995558999999997631 37888999999999999999764 3344466
Q ss_pred CCCCC
Q psy13521 229 GFPVT 233 (366)
Q Consensus 229 ~~pv~ 233 (366)
..|++
T Consensus 105 i~p~~ 109 (293)
T KOG4792|consen 105 IEPAK 109 (293)
T ss_pred ccccc
Confidence 66643
No 38
>KOG1856|consensus
Probab=98.05 E-value=1.9e-05 Score=87.02 Aligned_cols=162 Identities=17% Similarity=0.319 Sum_probs=114.3
Q ss_pred ccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEee-cCeeEEEEEEeC--------CeEEecCCcccCCHHH
Q psy13521 57 FDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEKK--------AVRYLMGGRTFECLDA 127 (366)
Q Consensus 57 ~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~-~~~V~H~rI~~~--------g~~y~~~~~~F~SL~e 127 (366)
.|-|| +++-++||.+|.....|.++||+|+......+++++. .+.-+|+.|.-. |+.+.+++..|+.|.+
T Consensus 1108 HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDE 1186 (1299)
T KOG1856|consen 1108 HPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDE 1186 (1299)
T ss_pred Ccccc-CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHH
Confidence 46776 8899999999998889999999997766667777765 456688888641 4556678899999999
Q ss_pred HHHHhhhcCCcc-ceeecCCccCCCcc---hhhh--hcCC--CcceeEeecCCCCCCceEEEEEeCCeEEEEEEeecCeE
Q psy13521 128 VINRYRKEQIVE-GHTLGFPVTRMSRQ---WKIA--TKGS--CHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR 199 (366)
Q Consensus 128 LV~~Y~~~~l~l-~~~L~~Pv~~~~~~---~~i~--~~g~--~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~~~~ 199 (366)
+|.-|-+.-... ...+.+-..+.... .+++ ++.. ..--|-+-.|...||+|.|+|..++.+.|--+..-..-
T Consensus 1187 iI~r~vqpm~~~~~em~nhkyf~~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g 1266 (1299)
T KOG1856|consen 1187 IIARYVQPMATNLREMTNHKYFFTGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEG 1266 (1299)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccc
Confidence 999997754322 11222222221111 1222 3332 12334455676789999999998888888877666555
Q ss_pred EEcCCCccCCHHHHHHHHHh
Q psy13521 200 YLMGGRTFECLDAVINRYRK 219 (366)
Q Consensus 200 yi~~~~~F~sL~eLV~~Y~~ 219 (366)
|...+.-|+|+++|+.+++.
T Consensus 1267 ~~~rg~~f~tld~L~~~FK~ 1286 (1299)
T KOG1856|consen 1267 FRFRGQNFGTLDELCRWFKR 1286 (1299)
T ss_pred eEEecccchhHHHHHHHHHH
Confidence 66778999999999987766
No 39
>KOG3697|consensus
Probab=97.69 E-value=4.6e-05 Score=73.15 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=75.7
Q ss_pred CcccCcCCcccHHHHHHHHhcCCCCcEEEecCC-----------------------------------------------
Q psy13521 55 TVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSD----------------------------------------------- 87 (366)
Q Consensus 55 e~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~----------------------------------------------- 87 (366)
..++|+||.+++.++++.|.. +|.|++|.+.
T Consensus 199 ~k~pp~~g~l~~~~~q~~l~~--~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~ 276 (345)
T KOG3697|consen 199 SKMPPPGGFLDTRLKQRPLAP--DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET 276 (345)
T ss_pred ccCCCCCCccchhhhhccCCc--ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence 467999999999999999854 7888887653
Q ss_pred CCCCceEEEEeecCeeEEEEEEeCCeEEecCCcccCCHHHHHHHhhhcCCcc-----ceeecCCccCC
Q psy13521 88 NSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE-----GHTLGFPVTRM 150 (366)
Q Consensus 88 s~pg~y~LSv~~~~~V~H~rI~~~g~~y~~~~~~F~SL~eLV~~Y~~~~l~l-----~~~L~~Pv~~~ 150 (366)
++||.|+|+=..++..+|..+.-..|......+.|+|+..||+||..+.+.. ...|.+|+.++
T Consensus 277 ~~~gqyvltgl~~~~~khlllvdpegvvrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 277 TTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred CCCccEEEecccCCCcceEEEECCccceecccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence 4567788877778889998887666666677799999999999999998763 34788888653
No 40
>KOG3601|consensus
Probab=97.69 E-value=8.5e-06 Score=75.11 Aligned_cols=103 Identities=21% Similarity=0.361 Sum_probs=72.5
Q ss_pred cCCHHHHHHHhhhcCCccceee-cCCccCCCcch---hh-------hhcCCCcceeEeecCCCCCCceEEEEEeCCeEEE
Q psy13521 122 FECLDAVINRYRKEQIVEGHTL-GFPVTRMSRQW---KI-------ATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQR 190 (366)
Q Consensus 122 F~SL~eLV~~Y~~~~l~l~~~L-~~Pv~~~~~~~---~i-------~~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~H 190 (366)
=-+..|.|+.|.....+-.... +...+.....| .+ .+.+...|.||+|.++.+||||++|+...+.|+|
T Consensus 27 ~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqh 106 (222)
T KOG3601|consen 27 ILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQH 106 (222)
T ss_pred ecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCcee
Confidence 3467788888887654422211 11111112334 11 2334788999999999999999999666899999
Q ss_pred EEEeecC-eEEEcCCCccCCHHHHHHHHHhccccc
Q psy13521 191 FRIEKKA-VRYLMGGRTFECLDAVINRYRKEQIVE 224 (366)
Q Consensus 191 ykI~~~~-~~yi~~~~~F~sL~eLV~~Y~~~~i~~ 224 (366)
|+.-+.+ +-|..+.+.|+|++++|+||+.+.+..
T Consensus 107 fkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r 141 (222)
T KOG3601|consen 107 FKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSR 141 (222)
T ss_pred ccccccCccccccchhhccCCCCCcccCccccccc
Confidence 9997665 667788899999999999998844433
No 41
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=97.52 E-value=3.6e-05 Score=75.72 Aligned_cols=55 Identities=36% Similarity=0.493 Sum_probs=49.6
Q ss_pred ccchhhHhhhhcc-hhHHH-----HHhhhhhccccchhhhHHHHHhhhcccccCcchhhhhh
Q psy13521 268 EEYSPLQQLLLES-DLAVV-----KALADVCHGDRNRLASSLLRIFSLDVKETLPCSIFYAI 323 (366)
Q Consensus 268 ~~~~~~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
|+|++|++||+++ |++-+ ++|++||. |+..||++|++||.+.++...+++.+..-
T Consensus 1 ~~y~~l~~ll~~s~~~~p~~~s~~~~l~~v~~-~~~elA~~Lv~if~~~~~~~~~l~~l~~~ 61 (310)
T cd05134 1 EYYSPLRDLLLKSADVEPVSASAAHILGEVCR-EKQEAAIPLVRLFLHYGKIVPFISAIASA 61 (310)
T ss_pred CccHHHHHHHHhCcccCCcchhHHHHHHHhCc-cHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6899999999999 68777 79999999 88999999999999999999988877654
No 42
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=97.41 E-value=0.00014 Score=72.38 Aligned_cols=80 Identities=38% Similarity=0.578 Sum_probs=73.7
Q ss_pred CccCcceeeeecccccccCcccchhhHhhhhcch-hHHHHHhhhhhcc-ccchhhhHHHHHhhhcccccCcchhhhhhhh
Q psy13521 248 GEWGSLRLKFRYSHDLVMPSEEYSPLQQLLLESD-LAVVKALADVCHG-DRNRLASSLLRIFSLDVKETLPCSIFYAILF 325 (366)
Q Consensus 248 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
+++|++|++++|....++|.+.|+.+..|++... +..+.+++++|.. |...+|+.|+++|.+.++...+++.+..--+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~Lv~~f~~~~~~~~~L~~li~~Ei 83 (344)
T smart00323 4 GDLGSLRLKTVYTTDFILPSEYYEELLELLLFSLDLSLASALSEVCSGLDKDELATKLVRLFLRRGRGHPFLRALIDPEV 83 (344)
T ss_pred CCcceeEEEeehhhcccCcHHHHHHHHHHHhcCchHHHHHHHHHhCChHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999777 7999999999965 7999999999999999999999998887776
Q ss_pred ce
Q psy13521 326 QT 327 (366)
Q Consensus 326 ~~ 327 (366)
+.
T Consensus 84 ~~ 85 (344)
T smart00323 84 ER 85 (344)
T ss_pred Hc
Confidence 65
No 43
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=97.23 E-value=0.00016 Score=71.13 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=49.2
Q ss_pred ccchhhHhhhhcc-hhH-----HHHHhhhhhccccchhhhHHHHHhhhcccccCcchhhhhh
Q psy13521 268 EEYSPLQQLLLES-DLA-----VVKALADVCHGDRNRLASSLLRIFSLDVKETLPCSIFYAI 323 (366)
Q Consensus 268 ~~~~~~~~l~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
|=|++|++||+++ |.+ .++.|+++| +||+.+|+.|+|+|.+.++...+++.+...
T Consensus 1 ~~Y~~l~~ll~~s~~~~p~~~s~~~~l~e~~-~~~~~~a~~Lvrlf~~~~~~~~fl~~li~~ 61 (313)
T cd05394 1 EYYSSLRSLLLKSPDVQPISASAAYILGEVC-RDKYDAVLPLVRLLLHHQKLVPFVAAVAEL 61 (313)
T ss_pred CchHHHHHHHHhCcccCCCcccHHHHHHHHH-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3589999999999 788 999999999 669999999999999999998888877643
No 44
>KOG4225|consensus
Probab=97.09 E-value=0.0004 Score=70.17 Aligned_cols=44 Identities=30% Similarity=0.545 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
...||+|.|||++.|+.+.|+.|.-+ ...|+.|++|.|||+.+.
T Consensus 243 t~kEL~~~kGDIVyI~rkvD~nWyeG--EhhGr~GifP~sYvE~~~ 286 (489)
T KOG4225|consen 243 TPKELPFNKGDIVYILRKVDQNWYEG--EHHGRVGIFPASYVEILT 286 (489)
T ss_pred CccccccCCCCEEEEEeeccCceeee--eecceecceechheeecC
Confidence 35799999999999999999999777 678899999999999775
No 45
>KOG4348|consensus
Probab=96.91 E-value=0.00017 Score=72.83 Aligned_cols=44 Identities=32% Similarity=0.585 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
+.|||+|+.||++.|+...+.+||.+. .+|..|++|+|||....
T Consensus 113 ndDELelkVGDiIeli~eVEeGWw~G~--Lngk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 113 NDDELELKVGDIIELISEVEEGWWKGK--LNGKVGMFPSNFVKELP 156 (627)
T ss_pred CCceeeeeeccHHHhhhHhhhhhhhce--ecCcccccchhhceecC
Confidence 578999999999999999889999986 45899999999998664
No 46
>KOG0194|consensus
Probab=96.85 E-value=0.0043 Score=64.50 Aligned_cols=84 Identities=21% Similarity=0.434 Sum_probs=61.9
Q ss_pred cceeEeecCCCCCCce----EEEEEe--CCeEEEEEEeecC-eEEEcCCCccCCHHHHHHHHHhcccc---cccccCCCC
Q psy13521 163 HKSFLVRPSDNSPGDY----SLFFHI--NNQIQRFRIEKKA-VRYLMGGRTFECLDAVINRYRKEQIV---EGHTLGFPV 232 (366)
Q Consensus 163 ~G~FLVR~S~~~~g~y----~LSfv~--~~~V~HykI~~~~-~~yi~~~~~F~sL~eLV~~Y~~~~i~---~~~~L~~pv 232 (366)
+|.||||.|+..+|.. .||+.- ...++||-|+..+ .+|......|+|+.+||+||..+... .+..|..|+
T Consensus 68 ~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~si~~li~~~~~~~~~~~~~~~~L~~PI 147 (474)
T KOG0194|consen 68 DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPTISELVNYYKFSKLEITGKNFFLKRPI 147 (474)
T ss_pred CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCcHHHHHHHHHhcccceeccceeecccc
Confidence 7999999998876542 677433 2789999998876 46777779999999999999884432 222488888
Q ss_pred Cccccc-eecCCCCcc
Q psy13521 233 TRTEDW-FSLAGVTPI 247 (366)
Q Consensus 233 ~~~d~W-~~l~~~~p~ 247 (366)
. +..| ..-+.++..
T Consensus 148 ~-r~~Wel~H~~v~l~ 162 (474)
T KOG0194|consen 148 P-RQKWELSHSDIELG 162 (474)
T ss_pred c-ccccEEeccCcccc
Confidence 5 6669 555555553
No 47
>KOG3875|consensus
Probab=96.79 E-value=0.00045 Score=67.15 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCEEEEEecC-----CCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNEL-----GDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~-----d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
++.||||++||++-|..+. +.+||..+....++.|+||.|||+-+.
T Consensus 281 np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~ 331 (362)
T KOG3875|consen 281 NPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIG 331 (362)
T ss_pred CHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhh
Confidence 4579999999999998764 336988877667899999999998765
No 48
>KOG2059|consensus
Probab=96.64 E-value=0.0019 Score=68.68 Aligned_cols=87 Identities=33% Similarity=0.556 Sum_probs=73.6
Q ss_pred ccccceecCCCCc------cCccCcceeeeecccccccCcccchhhHhhhhcch------hHHHHHhhhhhccccchhhh
Q psy13521 234 RTEDWFSLAGVTP------IGEWGSLRLKFRYSHDLVMPSEEYSPLQQLLLESD------LAVVKALADVCHGDRNRLAS 301 (366)
Q Consensus 234 ~~d~W~~l~~~~p------~~~~g~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~ 301 (366)
.-+.||-|..-.+ -+..||+|+.++|.-|-|.|.+-|++|..||+.+. --+|.-|.++|. +|+..|.
T Consensus 244 ~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps~~Y~pL~~LLl~s~d~~p~taS~v~ileEl~~-~kqdva~ 322 (800)
T KOG2059|consen 244 SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPSQYYKPLMDLLLESVDVQPITASAVAILEELCR-EKQDVAR 322 (800)
T ss_pred CccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccHhhhhhHHHHHHhcccccccchhHHHHHHHHhh-hhhhHHH
Confidence 4678988877755 25899999999999999999999999999998754 345777889998 9999999
Q ss_pred HHHHHhhhcccccCcchhhh
Q psy13521 302 SLLRIFSLDVKETLPCSIFY 321 (366)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~ 321 (366)
.|+|.|.|-.+=+..++.++
T Consensus 323 ~LVrLfl~~~r~~pfl~~L~ 342 (800)
T KOG2059|consen 323 PLVRLFLHSDRIVPFLSALA 342 (800)
T ss_pred HHHHHHhcccchHHHHHHHH
Confidence 99999999887766666555
No 49
>KOG1029|consensus
Probab=96.59 E-value=0.0012 Score=70.68 Aligned_cols=43 Identities=26% Similarity=0.530 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
...+|+|.|||+++|+++. +.||.+ ...|+.||+|.+||.+.+
T Consensus 826 ke~dLsFskgd~I~Vlekq-emwW~G--~v~g~~GwFPksYVk~~~ 868 (1118)
T KOG1029|consen 826 KENDLSFSKGDTITVLEKQ-EMWWFG--EVAGEIGWFPKSYVKEVG 868 (1118)
T ss_pred ccccccccCCCeeeeehhc-cceecc--cccCccCcCcHHhhhhcc
Confidence 4579999999999999984 589888 678899999999999664
No 50
>KOG4348|consensus
Probab=96.02 E-value=0.0042 Score=62.99 Aligned_cols=44 Identities=30% Similarity=0.558 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCEEEEEecC--CCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNEL--GDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~--d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
+.|||+|+.||++..++++ |.+||.+ ..+|+.|.+|-|||..+.
T Consensus 274 ndDELt~KEgdil~lItK~cgdaGWweG--ELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 274 NDDELTLKEGDILILITKNCGDAGWWEG--ELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred CccceeeccccEEEEecccccccceeee--eecCccccCCchhhhhcC
Confidence 5789999999999988764 6699988 688999999999998654
No 51
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=96.01 E-value=0.0045 Score=61.26 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=53.2
Q ss_pred cchhhHhhhhcc------hhHHHHHhhhhhccccchhhhHHHHHhhhcccccCcchhhhhhhhcee
Q psy13521 269 EYSPLQQLLLES------DLAVVKALADVCHGDRNRLASSLLRIFSLDVKETLPCSIFYAILFQTV 328 (366)
Q Consensus 269 ~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
-|++|++||+++ +.+.+.+|.+||..|+..+|+.|+++|.+.++...+++.+..-=+++.
T Consensus 2 ~y~~l~~ll~~~~~~~~~~~s~~~~l~~v~~~~~~~~a~~Lv~if~~~g~l~~ll~~li~~Ei~~t 67 (315)
T cd05128 2 YYQPLRDLLLESVDVGPISASAAAILEEVCREERQDVAVPLVKLFLGQGLIVPFLDALAQLELKRT 67 (315)
T ss_pred CcHHHHHHHHcccccCCCChhHHHHHHHhCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 489999999998 799999999999999999999999999999998888887776555543
No 52
>KOG4566|consensus
Probab=95.79 E-value=0.015 Score=55.82 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=66.3
Q ss_pred CCcccCcCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCeeEEEEEEeCCeEEec------CC--cccCCH
Q psy13521 54 NTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM------GG--RTFECL 125 (366)
Q Consensus 54 ~e~~~WyhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~~y~~------~~--~~F~SL 125 (366)
+..-+||+|..++.+|+..|...+.|+|++|+|...+-.+.|+++.....+--+|...++.|.. .. ..|++.
T Consensus 49 ~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~~e~~ 128 (258)
T KOG4566|consen 49 LDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLISFEDV 128 (258)
T ss_pred cccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCcccChhH
Confidence 4456899999999999999988889999999998777789999998777777777663332221 12 599999
Q ss_pred HHHHHHhhhcCC
Q psy13521 126 DAVINRYRKEQI 137 (366)
Q Consensus 126 ~eLV~~Y~~~~l 137 (366)
..+++||+....
T Consensus 129 ~~~~~~y~~~~~ 140 (258)
T KOG4566|consen 129 EVLIHHYRQSRK 140 (258)
T ss_pred HHHHHhhhhhhh
Confidence 999999966544
No 53
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=95.74 E-value=0.0056 Score=54.04 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=30.8
Q ss_pred ccccceecCCCCcc---------CccCcceeeeecccccccCc
Q psy13521 234 RTEDWFSLAGVTPI---------GEWGSLRLKFRYSHDLVMPS 267 (366)
Q Consensus 234 ~~d~W~~l~~~~p~---------~~~g~~~~~~~~~~~~~~p~ 267 (366)
..|.||||.+..+. +++|+||+++||.+..|||-
T Consensus 104 ~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP~ 146 (146)
T cd04013 104 FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLPL 146 (146)
T ss_pred cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCCC
Confidence 58999999999876 58999999999999999993
No 54
>KOG3523|consensus
Probab=95.47 E-value=0.003 Score=66.28 Aligned_cols=46 Identities=35% Similarity=0.541 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
.+|||++++||++.|+.+..++|..+.+.+.|+.||+|..|+..+.
T Consensus 621 q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 621 QPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEIT 666 (695)
T ss_pred CCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhc
Confidence 5799999999999999999899999999999999999999998764
No 55
>KOG1930|consensus
Probab=95.23 E-value=0.016 Score=58.66 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=57.4
Q ss_pred hhcCCCcceeEeecCCCCCCceEEEEEe---------------CCeEEEEEEeecC-eEEE--cC-CCccCCHHHHHHHH
Q psy13521 157 ATKGSCHKSFLVRPSDNSPGDYSLFFHI---------------NNQIQRFRIEKKA-VRYL--MG-GRTFECLDAVINRY 217 (366)
Q Consensus 157 ~~~g~~~G~FLVR~S~~~~g~y~LSfv~---------------~~~V~HykI~~~~-~~yi--~~-~~~F~sL~eLV~~Y 217 (366)
+++...+|+|+||+|.+.+|.|-|-+.. +.-|+||.|+... +.-+ |. ...|.||..||--+
T Consensus 227 lLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkLKGC~nEP~FGSLSALV~QH 306 (483)
T KOG1930|consen 227 LLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKLKGCDNEPVFGSLSALVYQH 306 (483)
T ss_pred HhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceeccCCCCCCccchhHHHHhhc
Confidence 4677889999999999999999888655 1459999998653 3333 22 35999999999766
Q ss_pred HhcccccccccCCC
Q psy13521 218 RKEQIVEGHTLGFP 231 (366)
Q Consensus 218 ~~~~i~~~~~L~~p 231 (366)
+-.++-+-++|..|
T Consensus 307 SIt~LALPckL~iP 320 (483)
T KOG1930|consen 307 SITALALPCKLVIP 320 (483)
T ss_pred cchhhhcceeEecc
Confidence 66777777777655
No 56
>KOG0609|consensus
Probab=94.68 E-value=0.014 Score=60.68 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEecCCCCeeEEEeCC---CCcccceeccccccc
Q psy13521 6 ELTFQKGDIFFVHNELGDGWLWVTAHR---TGEQGMIFRDLVEDL 47 (366)
Q Consensus 6 ELSF~kGD~l~Il~~~d~dWw~~~~~~---tg~~GlVPsnyV~~~ 47 (366)
-|+|++||++.|++..|..||.+++.. .+..|+|||......
T Consensus 237 gl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 237 GLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred CCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence 589999999999999999999998865 356799999887643
No 57
>KOG3557|consensus
Probab=94.66 E-value=0.012 Score=62.38 Aligned_cols=44 Identities=25% Similarity=0.583 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
+..||+..|||+++|+++ ...||.++ +..|+.||||+|.+++..
T Consensus 513 Ns~ELsV~k~E~LEvl~d-~R~WW~~k-n~~G~~GyvP~nIL~~~~ 556 (721)
T KOG3557|consen 513 NSSELSVKKGEVLEVLDD-GRKWWKVK-NGHGRAGYVPSNILAPLQ 556 (721)
T ss_pred cchhhhhhhhhhhhhhhc-cccceecc-CccCCCCCcchhhhccCC
Confidence 356999999999999997 46887765 688999999999998764
No 58
>KOG3632|consensus
Probab=94.43 E-value=0.035 Score=61.33 Aligned_cols=44 Identities=27% Similarity=0.497 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCEEEEEecCC-CCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELG-DGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d-~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
...||+|++||+++|+.+.| ++++.+ ..+|..|+||+|+|++..
T Consensus 1159 aEeELpFregqIikV~GDkDadgFY~G--E~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1159 AEEELPFREGQIIKVLGDKDADGFYMG--ELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred hhhccccccCcEEEEeccccccceeec--cccccccccccccccccc
Confidence 35699999999999998755 566554 788999999999999875
No 59
>KOG4575|consensus
Probab=94.17 E-value=0.037 Score=58.60 Aligned_cols=45 Identities=31% Similarity=0.564 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCC-CCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHR-TGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~-tg~~GlVPsnyV~~~~ 48 (366)
..+||-|-.||++++..-. ++|||...++ +.+.|++|+|||...+
T Consensus 21 ~eGdl~f~egDlie~trI~-dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 21 REGDLKFTEGDLIEQTRIE-DGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred cccccceecccceeEEeec-cceeeeeeeecccccccCcccceeecc
Confidence 3579999999999998874 5677776666 6789999999998765
No 60
>KOG1029|consensus
Probab=94.07 E-value=0.038 Score=59.65 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecc-cccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRD-LVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsn-yV~~~~ 48 (366)
++.+|+|..||.+.|.++ |++||.++ .++.+|.+|+| |+.+.+
T Consensus 919 Eq~dlt~~egd~iLvtek-dgeww~gt--~~~r~gifPan~y~r~~~ 962 (1118)
T KOG1029|consen 919 EQGDLTFHEGDEILVTEK-DGEWWTGT--CGDREGIFPANYYVRPKD 962 (1118)
T ss_pred cCCCccccccceEEEeec-cCceeccc--cCCccccccccceeeehh
Confidence 467999999999999998 67998873 67789999999 555544
No 61
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=94.02 E-value=0.055 Score=50.95 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=51.8
Q ss_pred cCcCCcccHHHHHHHHhcC----C-CCcEEEecCCCCCCceEEEEeecCeeEEEE--EEe-CCeEEecCCcccCCHHHHH
Q psy13521 58 DWFHPECTKNDAVDMLVKA----G-PGSFLVRPSDNSPGDYSLFFHINNQIQRFR--IEK-KAVRYLMGGRTFECLDAVI 129 (366)
Q Consensus 58 ~WyhG~IsR~eAE~lL~~~----~-~GsFLVR~S~s~pg~y~LSv~~~~~V~H~r--I~~-~g~~y~~~~~~F~SL~eLV 129 (366)
+.|.. -+++++|+.|... + --.|.+-.+...||.|.|++..+....|.. |.. .+| |.+.+..|+++.+|+
T Consensus 136 ~kf~~-g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~G-f~~r~~~f~~~~~L~ 213 (220)
T PF14633_consen 136 RKFKD-GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDG-FRFRKQVFPSLDRLI 213 (220)
T ss_dssp TTEES-S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSS-EEETTEEESSHHHHH
T ss_pred ccccC-CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCc-EEEecccCCCHHHHH
Confidence 34432 3577788888653 3 456777778889999999998755444443 655 344 446789999999999
Q ss_pred HHhhhc
Q psy13521 130 NRYRKE 135 (366)
Q Consensus 130 ~~Y~~~ 135 (366)
.+++.+
T Consensus 214 ~~FK~~ 219 (220)
T PF14633_consen 214 NWFKKH 219 (220)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 999864
No 62
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=93.07 E-value=0.098 Score=42.18 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 4 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 4 ~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
.-+|.+++|+.+.|++..+++-|.+| +..|+-||||.+++.+.+
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCR-N~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCR-NSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEE-ETTTEEEEEEGGGS----
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEe-CCCCceeEEEHHHccCCC
Confidence 46899999999999998887776765 788999999999997665
No 63
>KOG3775|consensus
Probab=91.79 E-value=0.11 Score=52.25 Aligned_cols=46 Identities=33% Similarity=0.482 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
.+|||-++.||-+.|-...++-|..+...+||+.|.+|+.|+..++
T Consensus 275 HpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 275 HPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred CcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 5789999999999998888889999999999999999999998764
No 64
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=91.38 E-value=0.14 Score=50.94 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=39.3
Q ss_pred hhhHhhhh----cchhHHHHHhhhhhcc-ccchhhhHHHHHhhhcccccCcchhh
Q psy13521 271 SPLQQLLL----ESDLAVVKALADVCHG-DRNRLASSLLRIFSLDVKETLPCSIF 320 (366)
Q Consensus 271 ~~~~~l~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (366)
+-|-+|+. +++|.++.||+.||.. |..-||++|+++|.++++...|++.+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~al~~v~~~~e~d~la~~lv~lf~~~~~l~~ll~~~ 58 (329)
T cd05130 4 ERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNM 58 (329)
T ss_pred HHHHHHHHHhccCccchHHHHHHHhCCHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34445554 7999999999999987 88889999999999977655554443
No 65
>KOG4225|consensus
Probab=90.23 E-value=0.23 Score=50.83 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=40.3
Q ss_pred CCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 4 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 4 ~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
+.||+|++||.+.+....|.+|..+....++.+|.+|.+||....
T Consensus 318 ~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~ 362 (489)
T KOG4225|consen 318 PVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIK 362 (489)
T ss_pred chhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhh
Confidence 459999999999999888999999987778999999999998654
No 66
>KOG3508|consensus
Probab=89.93 E-value=0.0079 Score=66.21 Aligned_cols=177 Identities=23% Similarity=0.219 Sum_probs=114.1
Q ss_pred ccCcCCcccHHHHHHHHhcCC-CCcEEEecCCCCCCceEEEEee-cCeeEEEEEEeC---CeEEecCCcccCCHHHH---
Q psy13521 57 FDWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEKK---AVRYLMGGRTFECLDAV--- 128 (366)
Q Consensus 57 ~~WyhG~IsR~eAE~lL~~~~-~GsFLVR~S~s~pg~y~LSv~~-~~~V~H~rI~~~---g~~y~~~~~~F~SL~eL--- 128 (366)
-.||||+..|.-++..+.... .|.++||++..-|+.+.++.-- -+.+.|+++... ...+.-+..-|..++-|
T Consensus 81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s~~~~s~vl~gE~~~f~~lPpl~~~ 160 (932)
T KOG3508|consen 81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTISKCGTSNVLWGENFLFPVLPPLPVV 160 (932)
T ss_pred hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhhhcccchhccccccccccCCccchh
Confidence 469999999999999977666 8999999999999999887753 344888888642 12222222222222111
Q ss_pred -------HHHhhhcCC----ccceeecCCccC-CCcc----------------------------------h--------
Q psy13521 129 -------INRYRKEQI----VEGHTLGFPVTR-MSRQ----------------------------------W-------- 154 (366)
Q Consensus 129 -------V~~Y~~~~l----~l~~~L~~Pv~~-~~~~----------------------------------~-------- 154 (366)
|+.|++.+. +.-.--..++.. +... |
T Consensus 161 ~~~~~~~i~~~~k~~~n~~l~~~~~~~f~~~~~~~d~w~~v~t~~~~e~~~i~~s~~~~~~~~~~~~~~ar~q~i~i~~~ 240 (932)
T KOG3508|consen 161 DVLRVRAILPKKKKPTNDEIGFVKGDEFPVHRDLEDGWYWVTTSRTDEGGSIIASLVGGKSESPDPRIKARWQSINILPM 240 (932)
T ss_pred hhhhhhhhhhhhccCcccccccccchhheecccccceeEEeeccccccCCcccccccccccCCCCccccccccccccCch
Confidence 223333221 100000011100 0001 1
Q ss_pred ---hhhhcCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeec-CeEEEcCCCccCCHHH-HHHHHHhcccccccccC
Q psy13521 155 ---KIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDA-VINRYRKEQIVEGHTLG 229 (366)
Q Consensus 155 ---~i~~~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~-~~~yi~~~~~F~sL~e-LV~~Y~~~~i~~~~~L~ 229 (366)
++.......+.|+++.+...++.|.+.+...+.+.|+.+... +.-|+++...++.+.. -++||....+.+++++.
T Consensus 241 e~y~~~~e~~~~~y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~ak~fl~Dl~~~e~~r~~~idhlifrentlatka~ 320 (932)
T KOG3508|consen 241 EAYDELAETGTYNYFLLCPVLNPPLDVSLKEELANALVRVLISTGRAKQFLMDLRMKEVLRLGDIDHLIFRENTLATKAI 320 (932)
T ss_pred HHHHHHHHHhccceeeeecccCCCcchhHHHHHHHHHHHHHHhcchHHHHhhcchhHhhhhccchhhhhhhhhhhhhhhh
Confidence 111122234588899998888888888777888889988655 5778899999999866 68999999999999999
Q ss_pred CCCC
Q psy13521 230 FPVT 233 (366)
Q Consensus 230 ~pv~ 233 (366)
.|+.
T Consensus 321 ep~m 324 (932)
T KOG3508|consen 321 EPYM 324 (932)
T ss_pred hHHH
Confidence 8844
No 67
>KOG4773|consensus
Probab=89.00 E-value=0.11 Score=51.52 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccccC--CCC---CCCcccCcCCcccH---HHHHHHHhc
Q psy13521 4 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE--TID---PNTVFDWFHPECTK---NDAVDMLVK 75 (366)
Q Consensus 4 ~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~~--~~~---p~e~~~WyhG~IsR---~eAE~lL~~ 75 (366)
..||.|.+||+..++...+.+||.++ ..+..||+|..|+...+. +.+ .-...|+|-|.++- -..+++|..
T Consensus 189 ~~EL~l~agdV~~~~~r~ek~W~~gk--~R~~~g~yp~sF~~~ld~fpeeD~~~nw~r~pY~~~~v~tv~e~~~~~rl~~ 266 (386)
T KOG4773|consen 189 KLELNLVAGDVEFLLSRDEKYWLLGK--VRGLTGYYPDSFVKQLDDFPEEDAGTNWLRCPYYPGPVSTVKEGIEESRLEV 266 (386)
T ss_pred cceeeeehhhHHHHHhhcccceeeee--eccccccccHHhhhhhccCccccCCCCcccCccccCchHHhhhhhhHhhhhh
Confidence 45899999999999998899999985 456789999999987652 111 12457888887752 233444554
Q ss_pred CC---CCcEEEecCC
Q psy13521 76 AG---PGSFLVRPSD 87 (366)
Q Consensus 76 ~~---~GsFLVR~S~ 87 (366)
.+ +|.-++|+++
T Consensus 267 lp~~l~~~~~~~~r~ 281 (386)
T KOG4773|consen 267 LPKYLDGLEVIRPRE 281 (386)
T ss_pred hHHhhccccccChhh
Confidence 44 6777777543
No 68
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=88.98 E-value=0.3 Score=35.00 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=27.7
Q ss_pred CCCCCEEEEEecCCCC-eeEEEeCCCCcccceeccccc
Q psy13521 9 FQKGDIFFVHNELGDG-WLWVTAHRTGEQGMIFRDLVE 45 (366)
Q Consensus 9 F~kGD~l~Il~~~d~d-Ww~~~~~~tg~~GlVPsnyV~ 45 (366)
+.+|+.+.|++..+++ |..++ ...+..|||+++|+.
T Consensus 19 l~~g~~v~v~~~~~~~~W~~V~-~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 19 LPKGEKVTVLGESGDGNWYKVR-TYDGKTGWVSSSYLS 55 (55)
T ss_dssp EETTSEEEEEEEETT--EEEEE-EETTEEEEEEGGCEE
T ss_pred EeCCCEEEEEEEcCCcEEEEEE-CcCCcEEEEEccccC
Confidence 5689999999876544 87773 466779999999873
No 69
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=88.92 E-value=0.35 Score=48.43 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=49.7
Q ss_pred chhhHhhhhcc-------hhHHHHHhhhhhc-cccchhhhHHHHHhhhcccccCcchhhhhhhhcee
Q psy13521 270 YSPLQQLLLES-------DLAVVKALADVCH-GDRNRLASSLLRIFSLDVKETLPCSIFYAILFQTV 328 (366)
Q Consensus 270 ~~~~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
|++|-+|++++ ....+..|.+++. .+|.-||++|++||.+.++...+++.|...=++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~eela~~Lv~if~~~g~~~~fL~~l~~~Ev~~~ 69 (337)
T cd05395 3 YQPLVSLLCEEVKKGNQGWPDLIMLIDETTTAESRQDVANNLVKLFLGQGLVKEFLDLLFKLELDKT 69 (337)
T ss_pred hhHHHHHHHHHHhcccCCchhHHHHHHhhcChhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhC
Confidence 88999998754 4589999999997 55999999999999999999999988876654443
No 70
>KOG2222|consensus
Probab=88.53 E-value=0.28 Score=50.81 Aligned_cols=44 Identities=34% Similarity=0.403 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
+.+||.|+|.|+++|++..|.+-|-+ ..+|-.||+|..||+..+
T Consensus 561 dddelgfrkndiitiisekdehcwvg--elnglrgwfpakfvelld 604 (848)
T KOG2222|consen 561 DDDELGFRKNDIITIISEKDEHCWVG--ELNGLRGWFPAKFVELLD 604 (848)
T ss_pred cccccccccccEEEEeecCCcceeee--ccccccccchHHHHHHHH
Confidence 57899999999999998877777655 678889999999998665
No 71
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=87.48 E-value=0.38 Score=40.71 Aligned_cols=30 Identities=53% Similarity=1.228 Sum_probs=25.8
Q ss_pred ccccceecCCCCc--cCccCcceeeeeccccc
Q psy13521 234 RTEDWFSLAGVTP--IGEWGSLRLKFRYSHDL 263 (366)
Q Consensus 234 ~~d~W~~l~~~~p--~~~~g~~~~~~~~~~~~ 263 (366)
..+.|++|.+..+ .+..|+|+++++|.+|+
T Consensus 95 ~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~~ 126 (126)
T cd08400 95 ETDEWYPLSSASPLKGGEWGSLRIRARYSHEL 126 (126)
T ss_pred cccEeEEcccCCCCCCCcCcEEEEEEEEEccC
Confidence 3688999998875 57899999999999985
No 72
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=87.09 E-value=0.98 Score=33.01 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=27.8
Q ss_pred CCCCCEEEEEecCCCCeeEEEeCCCCcccceecccc
Q psy13521 9 FQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 44 (366)
Q Consensus 9 F~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV 44 (366)
+.+|+.+.|+...+++|..++ ...|..||||..++
T Consensus 27 l~~g~~v~i~~~~~~~W~~v~-~~~g~~Gwi~~~~~ 61 (63)
T smart00287 27 LKKGDKVKVLGVDGQDWAKIT-YGSGQRGYVPGYVV 61 (63)
T ss_pred ecCCCEEEEEEccCCceEEEE-cCCCCEEEEEeeee
Confidence 679999999987555897775 45689999987765
No 73
>KOG1856|consensus
Probab=86.61 E-value=1.4 Score=50.09 Aligned_cols=79 Identities=15% Similarity=0.339 Sum_probs=60.7
Q ss_pred ccCcCCcccHHHHHHHHhcCC--CCc---EEEecCCCCCCceEEEEeecCeeEEEEEEeCCeEEecCCcccCCHHHHHHH
Q psy13521 57 FDWFHPECTKNDAVDMLVKAG--PGS---FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINR 131 (366)
Q Consensus 57 ~~WyhG~IsR~eAE~lL~~~~--~Gs---FLVR~S~s~pg~y~LSv~~~~~V~H~rI~~~g~~y~~~~~~F~SL~eLV~~ 131 (366)
..+|. .-++.+.|++|.... ++. |-..-|...||.|.||++.++++.|--+......|.+.+..|+|+.+|..+
T Consensus 1205 hkyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg~~f~tld~L~~~ 1283 (1299)
T KOG1856|consen 1205 HKYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRGQNFGTLDELCRW 1283 (1299)
T ss_pred hhHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEEecccchhHHHHHHH
Confidence 34555 335999999998432 343 445678889999999999999999988877544566678899999999999
Q ss_pred hhhcC
Q psy13521 132 YRKEQ 136 (366)
Q Consensus 132 Y~~~~ 136 (366)
++.+-
T Consensus 1284 FK~h~ 1288 (1299)
T KOG1856|consen 1284 FKRHY 1288 (1299)
T ss_pred HHHHh
Confidence 98753
No 74
>KOG3751|consensus
Probab=85.95 E-value=0.36 Score=50.50 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=52.3
Q ss_pred cCCCcceeEeecCCCCCCceEEEEEeCCeEEEEEEeec---CeEEEc---CCCccCCHHHHHHHHHhccccc
Q psy13521 159 KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK---AVRYLM---GGRTFECLDAVINRYRKEQIVE 224 (366)
Q Consensus 159 ~g~~~G~FLVR~S~~~~g~y~LSfv~~~~V~HykI~~~---~~~yi~---~~~~F~sL~eLV~~Y~~~~i~~ 224 (366)
.|..+|-||+|.|.++|..+++++...+.|+||.|.-- +..|.. +.+.|.++.+||++|+-+.-.+
T Consensus 538 ~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd~~ql~~~~ql~k~~l 609 (622)
T KOG3751|consen 538 QGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSDLIQLVEFYQLNKGVL 609 (622)
T ss_pred cccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccccccccchhhcCCCcc
Confidence 36678999999999999999998888999999999533 344433 4469999999999998864333
No 75
>KOG0199|consensus
Probab=84.31 E-value=0.79 Score=50.01 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCEEEEEecCC-CCeeEEEeCCCCcccceeccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELG-DGWLWVTAHRTGEQGMIFRDLVE 45 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d-~dWw~~~~~~tg~~GlVPsnyV~ 45 (366)
+++-|-|++||.+.|++.+. +-||.++..+|++.|.+|.+-|.
T Consensus 387 ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 387 EPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred CCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 46789999999999998753 57888888999999999999887
No 76
>KOG3812|consensus
Probab=81.31 E-value=0.38 Score=47.86 Aligned_cols=37 Identities=19% Similarity=0.461 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEecCCCCeeEEEeCCCC-cccceecc
Q psy13521 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTG-EQGMIFRD 42 (366)
Q Consensus 6 ELSF~kGD~l~Il~~~d~dWw~~~~~~tg-~~GlVPsn 42 (366)
-+||+..|.+-|.++-+.|||.++..+.| +.|+||+-
T Consensus 81 aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 81 AISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred eeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence 58999999999999989999999876665 57999963
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.67 E-value=2.5 Score=39.49 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEecCC-CCeeEEEeCCCCcccceeccccccc
Q psy13521 8 TFQKGDIFFVHNELG-DGWLWVTAHRTGEQGMIFRDLVEDL 47 (366)
Q Consensus 8 SF~kGD~l~Il~~~d-~dWw~~~~~~tg~~GlVPsnyV~~~ 47 (366)
++.+|+.+.|++..+ ++|..++ ...|.+|||++.|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr-~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIR-DSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEE-eCCCCEEeEEHHHhcCC
Confidence 467999999998764 5787775 46789999999999754
No 78
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=75.00 E-value=2.1 Score=42.39 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=47.7
Q ss_pred ccchhhHhhhhcchhHHHHHhhhhhc-cccchhhhHHHHHhhhcccccCcchhhhh
Q psy13521 268 EEYSPLQQLLLESDLAVVKALADVCH-GDRNRLASSLLRIFSLDVKETLPCSIFYA 322 (366)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (366)
|-|..+-++|-..=..+..+|+.|+. +|+.-||++|++||.++++...+++.+..
T Consensus 1 ~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~~ela~~Lv~if~~~~~~~~~l~~Li~ 56 (309)
T cd05136 1 EVYKEFAEYLTSNYARLCEVLEPVLSVRAKEELACALVHVLQSTGKAKDFLTDLVM 56 (309)
T ss_pred CchHHHHHHHHhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45788888888877789999999995 78999999999999999999998877754
No 79
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=73.38 E-value=2.6 Score=42.11 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=44.5
Q ss_pred chhhHhhhhcch--------hHHHHHhhhhhcc-ccchhhhHHHHHhhhcccccCcchhhhhhhh
Q psy13521 270 YSPLQQLLLESD--------LAVVKALADVCHG-DRNRLASSLLRIFSLDVKETLPCSIFYAILF 325 (366)
Q Consensus 270 ~~~~~~l~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
|++|.+|++++- -..+..|.++|.. |+..+|..|+++|.+.++-..+++.+..-=+
T Consensus 3 y~~l~~ll~~~~~~~~~~~~~~~~~~L~ev~~~~~~~~~a~~LV~~f~~~~~~~~ll~~li~~Ev 67 (333)
T cd05135 3 YQPLIHLLVESVQAPAEVEDSSALALLEEVTTVESRQDVAMKLVKIFLGQGLAVPFLDYLNTREV 67 (333)
T ss_pred hHHHHHHHHhcccccccccchHHHHHHHhhcChHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889999998642 3378999999996 6799999999999999977666666654333
No 80
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=68.35 E-value=3.6 Score=34.92 Aligned_cols=26 Identities=35% Similarity=0.709 Sum_probs=23.8
Q ss_pred ccccceecCCCCccCccCcceeeeec
Q psy13521 234 RTEDWFSLAGVTPIGEWGSLRLKFRY 259 (366)
Q Consensus 234 ~~d~W~~l~~~~p~~~~g~~~~~~~~ 259 (366)
..|+|++|.+..+....|.|+|.++|
T Consensus 96 ~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 96 TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CccccEeCcCccCCCCceEEEEEEeC
Confidence 37999999999988899999999998
No 81
>KOG3632|consensus
Probab=68.26 E-value=3.8 Score=46.08 Aligned_cols=43 Identities=28% Similarity=0.602 Sum_probs=35.5
Q ss_pred CCCCCCCCCCCEEEEEecCC-CCeeEEEeCCCCcccceeccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELG-DGWLWVTAHRTGEQGMIFRDLVEDL 47 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d-~dWw~~~~~~tg~~GlVPsnyV~~~ 47 (366)
...+|+|+.||++.|..++| +++..+ ..+|+.|+||+|++...
T Consensus 1264 geAelafraGdIitVfg~mdddgfyyG--elngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1264 GEAELAFRAGDIITVFGKMDDDGFYYG--ELNGQKGLVPSNFLEAP 1307 (1335)
T ss_pred cceeeccccCCeEEeeccccCCccccc--ccCCccCccccccccCC
Confidence 34689999999999998864 566666 68899999999999754
No 82
>KOG2528|consensus
Probab=63.60 E-value=4.7 Score=41.66 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCEEEEEecC-CCCeeEEEeCCCCcccceeccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMIFRDLVEDL 47 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~-d~dWw~~~~~~tg~~GlVPsnyV~~~ 47 (366)
...||+...||++.|.+.. ..+||.+ .+.+|+.|++|..||+-.
T Consensus 15 ~~sElsi~~~evl~i~~e~~~~GwLeg-~Nsrge~GlfPa~yVeV~ 59 (490)
T KOG2528|consen 15 GHSELSIWEGEVLSITSEDVIEGWLEG-SNSRGERGLFPASYVEVT 59 (490)
T ss_pred ccccccccccceeeecCcccccccccC-CCccCccCCCcccceeee
Confidence 3568999999999999864 4578666 578899999999999844
No 83
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=62.64 E-value=20 Score=28.44 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred CcCCcccHHHHHHHHhcCC--CCcEEEecCCCCCCceEEEEeec
Q psy13521 59 WFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHIN 100 (366)
Q Consensus 59 WyhG~IsR~eAE~lL~~~~--~GsFLVR~S~s~pg~y~LSv~~~ 100 (366)
=|...++-+|....|+... +|+|+.|-|.+..|..++-....
T Consensus 4 gY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 4 GYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp TBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred ceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence 3555788999999998754 89999999999999999877653
No 84
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=60.38 E-value=15 Score=30.18 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=21.7
Q ss_pred eeEeecCCC-CCCceEEEEEe-C----CeEEEEEEee
Q psy13521 165 SFLVRPSDN-SPGDYSLFFHI-N----NQIQRFRIEK 195 (366)
Q Consensus 165 ~FLVR~S~~-~~g~y~LSfv~-~----~~V~HykI~~ 195 (366)
+||++++.+ .+.|+..+|++ + +++++|+-..
T Consensus 3 G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~ 39 (98)
T cd01245 3 GNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPK 39 (98)
T ss_pred CccccCCCCcccccceeEEEEecCCCCceEEEEcCCC
Confidence 567777665 67788888887 2 7777776543
No 85
>KOG0040|consensus
Probab=58.95 E-value=0.86 Score=52.94 Aligned_cols=46 Identities=28% Similarity=0.504 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccccCC
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~~~~ 50 (366)
++-+.+.++||++..++..+.+||.++ ...+.|+||..||....+.
T Consensus 981 Sprev~mKkgDvltll~s~nkdwwkve--~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 981 SPREVTMKKGDVLTLLNSINKDWWKVE--VNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred CHHHHHHhhhhHHHHHhhcccccccch--hhhhcCcchHHHHHHhccC
Confidence 345678899999999998889999874 6678999999999987644
No 86
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=57.40 E-value=7 Score=29.35 Aligned_cols=12 Identities=58% Similarity=1.110 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHH
Q psy13521 340 HAEKIYATLREC 351 (366)
Q Consensus 340 ~~~~~~~~~~~~ 351 (366)
--++|||+|+||
T Consensus 20 se~eIya~L~ec 31 (60)
T PF06972_consen 20 SEEEIYAMLKEC 31 (60)
T ss_pred CHHHHHHHHHHh
Confidence 367999999999
No 87
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=57.35 E-value=16 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEecCCCCeeEEEeCCCCcccceecccc
Q psy13521 8 TFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 44 (366)
Q Consensus 8 SF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV 44 (366)
.+.+|..+.|.+. .++|-.++ ..|..|+|+.+.+
T Consensus 20 ~l~~g~~v~v~~~-~~~W~~V~--~~g~~GWv~~~~l 53 (55)
T PF06347_consen 20 RLEPGVPVRVIEC-RGGWCKVR--ADGRTGWVHKSLL 53 (55)
T ss_pred EECCCCEEEEEEc-cCCeEEEE--ECCeEEeEEeeec
Confidence 3568888888865 56897775 7788999998776
No 88
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=53.44 E-value=18 Score=26.34 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.4
Q ss_pred CCCCCCEEEEEecCCCCeeEEEe
Q psy13521 8 TFQKGDIFFVHNELGDGWLWVTA 30 (366)
Q Consensus 8 SF~kGD~l~Il~~~d~dWw~~~~ 30 (366)
.|++||.+.+....++.||.+.-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 58999999999877789988754
No 89
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=52.69 E-value=12 Score=37.07 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=41.8
Q ss_pred cchhhHhhhhcchhHHHHHhhhhhc-cccchhhhHHHHHhhhcccccCcchhhhhh
Q psy13521 269 EYSPLQQLLLESDLAVVKALADVCH-GDRNRLASSLLRIFSLDVKETLPCSIFYAI 323 (366)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
-|+.|-.|+..... .+.+|+++|. .|...+|++|+++|...++-..|++.+..-
T Consensus 2 ~y~~l~~lL~~~p~-l~~~l~~~~~~~~~~~~~~~ll~lf~~~~~l~~ll~~li~~ 56 (323)
T cd05392 2 AYEELVNLLTNNPL-LAMAICNVCPSSEVDELASSLVNLFDSKHLLLPLVKQLIKR 56 (323)
T ss_pred cHHHHHHHHhCCHH-HHHHHHHhCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 36666666665555 8999999998 788899999999999998666666655543
No 90
>cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain. RasGAP functions as an enhancer of the hydrolysis of GTP that is bound to Ras-GTPases. Proteins having a RasGAP domain include p120GAP, IQGAP, Rab5-activating protein 6, and Neurofibromin. Although the Rho (Ras homolog) GTPases are most closely related to members of the Ras family, RhoGAP and RasGAP show no sequence homology at their amino acid level. RasGTPases function as molecular switches in a myriad of signaling pathways. When bound to GTP they are in the on state and when bound to GDP they are in the off state. The RasGap domain speeds up the hydrolysis of GTP in Ras-like proteins acting as a negative regulator.
Probab=49.24 E-value=19 Score=34.53 Aligned_cols=78 Identities=23% Similarity=0.215 Sum_probs=58.9
Q ss_pred chhhHhhhhcchh--HHHHHhhhhhc-cccchhhhHHHHHhhhcccccCcchhhhhhhhce---eecccccccchhhHHH
Q psy13521 270 YSPLQQLLLESDL--AVVKALADVCH-GDRNRLASSLLRIFSLDVKETLPCSIFYAILFQT---VTEVDAKIKPVQHAEK 343 (366)
Q Consensus 270 ~~~~~~l~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 343 (366)
|+.+..|+..... .....++.+|. .+...++..|+.+|.+.++...+++.+...-++. +......+...-+.-+
T Consensus 3 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ll~~li~~ei~~~~~~~~lfr~ns~~t~~~~ 82 (318)
T cd04519 3 YDRLEELLLKLPLELLLAEILSLVCPQDEVEELAISLLTLFLSRGKLLELLKELIKPEIKRTDEPNTLFRGNSLATRPLS 82 (318)
T ss_pred chHHHHHHHcCcchhHHHHHHhcCCChhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCchhHHhhhchHhhHHHH
Confidence 4566667766665 78888999998 7888999999999999999999988888777765 3444444555556666
Q ss_pred HHHH
Q psy13521 344 IYAT 347 (366)
Q Consensus 344 ~~~~ 347 (366)
+|..
T Consensus 83 ~y~~ 86 (318)
T cd04519 83 IYLK 86 (318)
T ss_pred HHHH
Confidence 6654
No 91
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=49.17 E-value=40 Score=26.62 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=19.4
Q ss_pred eeEeecCCCCC----CceEEEEEe-CCeEEEEEEee
Q psy13521 165 SFLVRPSDNSP----GDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 165 ~FLVR~S~~~~----g~y~LSfv~-~~~V~HykI~~ 195 (366)
++|-+.+.... .|...+|++ ++.+..|+-+.
T Consensus 4 GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~ 39 (96)
T cd01260 4 GWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ 39 (96)
T ss_pred eEEEEecCCCCccccCceeEEEEEECCEEEEECCCC
Confidence 56666554333 577777777 66777776544
No 92
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=49.03 E-value=20 Score=37.65 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccc
Q psy13521 8 TFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47 (366)
Q Consensus 8 SF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~ 47 (366)
++.+|+.+.|+...+.+|+..+ ...|..|||-+.|+...
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~-~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKIT-YNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEE-cCCCCEEEEecccccCC
Confidence 4679999999864456898774 45689999999999854
No 93
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=48.77 E-value=23 Score=27.91 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=19.5
Q ss_pred CCCCCCCCCEEEEEecC------CCCeeEEEe
Q psy13521 5 DELTFQKGDIFFVHNEL------GDGWLWVTA 30 (366)
Q Consensus 5 dELSF~kGD~l~Il~~~------d~dWw~~~~ 30 (366)
--|+.+.||.+.|-+.. +.+||.+.-
T Consensus 2 ~FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 2 VFLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 46899999999776543 569987754
No 94
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=44.39 E-value=38 Score=27.04 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=27.4
Q ss_pred ceeEeecCCCCCCceEEEEEe-CCeEEEEEEee
Q psy13521 164 KSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 164 G~FLVR~S~~~~g~y~LSfv~-~~~V~HykI~~ 195 (366)
.++|.+.+...++|...+||+ ++.+.+|+.+.
T Consensus 2 ~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~ 34 (91)
T cd01247 2 NGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEA 34 (91)
T ss_pred ceEEEEeccccCCCceEEEEEECCEEEEEecCc
Confidence 468999888889999999999 88899998753
No 95
>COG2403 Predicted GTPase [General function prediction only]
Probab=43.01 E-value=5.3 Score=40.69 Aligned_cols=44 Identities=32% Similarity=0.522 Sum_probs=40.8
Q ss_pred cccCcccchhhHhhhhcchhH-HHHHhhhhhccccchhhhHHHHH
Q psy13521 263 LVMPSEEYSPLQQLLLESDLA-VVKALADVCHGDRNRLASSLLRI 306 (366)
Q Consensus 263 ~~~p~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 306 (366)
-|.|.++|.+|.++|-+.+.. +|-||+|+.+.+|.-+||.+|..
T Consensus 64 pi~~~k~~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~ 108 (449)
T COG2403 64 PILPEKDYDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSA 108 (449)
T ss_pred cccccccHHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhC
Confidence 356888899999999999999 99999999999999999999975
No 96
>KOG3667|consensus
Probab=42.02 E-value=37 Score=37.02 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=39.3
Q ss_pred cCCcccHHHHHHHHhcCCCCcEEEecCCCCCCceEEEEeecCe-eEEEEEE
Q psy13521 60 FHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQ-IQRFRIE 109 (366)
Q Consensus 60 yhG~IsR~eAE~lL~~~~~GsFLVR~S~s~pg~y~LSv~~~~~-V~H~rI~ 109 (366)
--|.+++..+.++|...++|+|++|-|++..|..++......+ ..|+-|.
T Consensus 566 Imgfinkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 566 IMGFINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred eeeecchhhhhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEec
Confidence 3567889999999988889999999999988887776654332 3577776
No 97
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=38.98 E-value=47 Score=27.08 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=25.9
Q ss_pred ceeEeecCCC-CCCceEEEEEe-CCeEEEEEEee
Q psy13521 164 KSFLVRPSDN-SPGDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 164 G~FLVR~S~~-~~g~y~LSfv~-~~~V~HykI~~ 195 (366)
-+||.+.+.. .++|...+|++ ++.+.+|+.+.
T Consensus 2 eG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~ 35 (103)
T cd01251 2 EGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPL 35 (103)
T ss_pred ceeEEecCCCCCCCceeEEEEEeCCEEEEECCCC
Confidence 4789988865 48899999999 77899997754
No 98
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=38.42 E-value=56 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=27.9
Q ss_pred cceeEeecCCCCCCceEEEEEe-CCeEEEEEEeec
Q psy13521 163 HKSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEKK 196 (366)
Q Consensus 163 ~G~FLVR~S~~~~g~y~LSfv~-~~~V~HykI~~~ 196 (366)
..+||.+++...+.|...+|++ ++.+.+|+-+..
T Consensus 4 k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~ 38 (100)
T cd01233 4 KKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKD 38 (100)
T ss_pred eeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCC
Confidence 3578998888888999999999 788888887653
No 99
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.47 E-value=20 Score=30.14 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=37.6
Q ss_pred ccccceecCCCCc-cCccCcceeeeecccccccCcccchhhHhhh
Q psy13521 234 RTEDWFSLAGVTP-IGEWGSLRLKFRYSHDLVMPSEEYSPLQQLL 277 (366)
Q Consensus 234 ~~d~W~~l~~~~p-~~~~g~~~~~~~~~~~~~~p~~~~~~~~~l~ 277 (366)
-..+|-|+.|.-| +||-|.|-.-.--..|.+.|.+-.....++|
T Consensus 44 g~G~frP~egAnP~iGevgk~e~v~E~kiE~v~~~~~~~~v~~~i 88 (109)
T COG3323 44 GTGQFRPLEGANPFIGEVGKLEFVAEVKIEFVVPAELRAAVLSAI 88 (109)
T ss_pred eeEEEeecCCCCCcccccceEEeeeeeEEEEEcCHHHHHHHHHHH
Confidence 3789999999999 6999999999999999999999776655544
No 100
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=35.67 E-value=41 Score=31.48 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEecCCC-CeeEEEeCCCCcccceecccccccc
Q psy13521 8 TFQKGDIFFVHNELGD-GWLWVTAHRTGEQGMIFRDLVEDLD 48 (366)
Q Consensus 8 SF~kGD~l~Il~~~d~-dWw~~~~~~tg~~GlVPsnyV~~~~ 48 (366)
+.++||.+.|+...+. +|...+ ...|+.||||+.++....
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~-~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIR-DSSGRTGWILSKNLTSEP 89 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEE-ecCCceEEEechhhcccc
Confidence 4689999999987443 475554 677899999999998653
No 101
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=35.02 E-value=16 Score=37.68 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhcceeccccc
Q psy13521 342 EKIYATLRECREQVGLKKIKGTY 364 (366)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~ 364 (366)
++|--.+...-..+|+|||||||
T Consensus 554 ~d~~~~i~k~~~~~~~kkik~ty 576 (587)
T COG4716 554 RDITLDIQKLALKGGLKKIKGTY 576 (587)
T ss_pred HhccccHHHHHHHhhhhhhhhhH
Confidence 33333345556789999999998
No 102
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=34.87 E-value=62 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=24.9
Q ss_pred eeEeecCCCCCCceEEEEEe---CCeEEEEEEe
Q psy13521 165 SFLVRPSDNSPGDYSLFFHI---NNQIQRFRIE 194 (366)
Q Consensus 165 ~FLVR~S~~~~g~y~LSfv~---~~~V~HykI~ 194 (366)
+||.+.+...++|+..+|++ ++.+.+|+-+
T Consensus 3 G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~ 35 (101)
T cd01235 3 GYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDF 35 (101)
T ss_pred EEEEEcCCCCCCccceEEEEECCCCEEEEecCC
Confidence 78999988889999999999 3378888754
No 103
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=31.97 E-value=32 Score=27.74 Aligned_cols=26 Identities=42% Similarity=0.809 Sum_probs=21.3
Q ss_pred ccccceecCCCCcc-CccCcceeeeec
Q psy13521 234 RTEDWFSLAGVTPI-GEWGSLRLKFRY 259 (366)
Q Consensus 234 ~~d~W~~l~~~~p~-~~~g~~~~~~~~ 259 (366)
..+.|++|.+..+. ..-|+|+++++|
T Consensus 91 ~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 91 GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred cceeEEECccCCCCCCcCceEEEEEEC
Confidence 36889999887763 579999999987
No 104
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=30.48 E-value=1.2e+02 Score=24.71 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=21.7
Q ss_pred ceeEeecCCCC----CCceEEEEEe-CCeEEEEEEee
Q psy13521 164 KSFLVRPSDNS----PGDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 164 G~FLVR~S~~~----~g~y~LSfv~-~~~V~HykI~~ 195 (366)
|.++++.+... .+|+..+|++ +..+.+|+-+.
T Consensus 4 ~~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~ 40 (98)
T cd01244 4 NLQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQ 40 (98)
T ss_pred ccEEEEcccCCCccCcCCceeEEEECCCEEEEECCCC
Confidence 55677766443 4578888888 66788886543
No 105
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.34 E-value=1.1e+02 Score=24.44 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=24.4
Q ss_pred ceeEeecCCC--CCCceEEEEEeC---CeEEEEEEeec
Q psy13521 164 KSFLVRPSDN--SPGDYSLFFHIN---NQIQRFRIEKK 196 (366)
Q Consensus 164 G~FLVR~S~~--~~g~y~LSfv~~---~~V~HykI~~~ 196 (366)
.+||.+.+.. .++|...+||++ ..+.+|+.+..
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d 39 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD 39 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc
Confidence 4788887653 478999999993 46888887643
No 106
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=30.25 E-value=74 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=23.0
Q ss_pred ceeEeecCCCC-----CCceEEEEEe-CCeEEEEEEe
Q psy13521 164 KSFLVRPSDNS-----PGDYSLFFHI-NNQIQRFRIE 194 (366)
Q Consensus 164 G~FLVR~S~~~-----~g~y~LSfv~-~~~V~HykI~ 194 (366)
.++|++.+... .+|...+|++ ++.+.+|+-.
T Consensus 3 ~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~ 39 (106)
T cd01238 3 ESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGD 39 (106)
T ss_pred ceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCC
Confidence 56788765333 2899999999 7789999764
No 107
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.19 E-value=89 Score=26.12 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=26.6
Q ss_pred ceeEeecCCCCCCceEEEEEe-CCeEEEEEEee
Q psy13521 164 KSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 164 G~FLVR~S~~~~g~y~LSfv~-~~~V~HykI~~ 195 (366)
.+||.+.+....+|...+|++ ++.+.+|+.+.
T Consensus 3 ~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~ 35 (125)
T cd01252 3 EGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTT 35 (125)
T ss_pred EEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCC
Confidence 578998887778999999999 77888887643
No 108
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.62 E-value=1.2e+02 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=24.5
Q ss_pred ceeEeecCCCCCCceEEEEEe-CCeEEEEEEee
Q psy13521 164 KSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 164 G~FLVR~S~~~~g~y~LSfv~-~~~V~HykI~~ 195 (366)
-+||.+.+....+|...+|++ ++.+.+|+-+.
T Consensus 2 ~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~ 34 (91)
T cd01246 2 EGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKS 34 (91)
T ss_pred eEEEEEecccCCCceeeEEEEECCEEEEEecCc
Confidence 367887776778888888887 77888887754
No 109
>COG3309 VapD Uncharacterized virulence-associated protein D [Function unknown]
Probab=26.60 E-value=36 Score=27.80 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=35.0
Q ss_pred hhhhhhceeecccccccchhhHHHHHHHHHHHHHhhcceecccc
Q psy13521 320 FYAILFQTVTEVDAKIKPVQHAEKIYATLRECREQVGLKKIKGT 363 (366)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (366)
||||.|--.++.-.+..+ ..-.+-|+-||.--|+.|.+.+.|+
T Consensus 1 ~yaIaFdL~t~~lk~~~~-~~~~~aY~Dir~~L~~~gF~~tQGS 43 (96)
T COG3309 1 MYAIAFDLDTKILKDYYH-SNYRQAYDDIRRVLERHGFENTQGS 43 (96)
T ss_pred CeeEEEeeehHHHHHhcc-hhHHHHHHHHHHHHHHcCcccccce
Confidence 688888777776666554 4567889999999999999999886
No 110
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=25.28 E-value=30 Score=34.37 Aligned_cols=26 Identities=42% Similarity=0.526 Sum_probs=23.4
Q ss_pred cchhHHHHHhhhhhccccchhhhHHH
Q psy13521 279 ESDLAVVKALADVCHGDRNRLASSLL 304 (366)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (366)
++|-.|+-.-|+||-.+|.+|||+=|
T Consensus 211 eKDpeVlekaAEvaEGeRclLaSanl 236 (403)
T COG2069 211 EKDPEVLEKAAEVAEGERCLLASANL 236 (403)
T ss_pred ccCHHHHHHHHHhhcCceEEeecccc
Confidence 56788999999999999999999866
No 111
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=25.03 E-value=40 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=21.2
Q ss_pred ccccceecCCCCccC-ccCcceeeeecc
Q psy13521 234 RTEDWFSLAGVTPIG-EWGSLRLKFRYS 260 (366)
Q Consensus 234 ~~d~W~~l~~~~p~~-~~g~~~~~~~~~ 260 (366)
..+.||+|.+....+ ..|+|++.+.|.
T Consensus 106 ~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 106 YTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred ccchheeeeecCCCCcceeEEEEEEeeC
Confidence 367899998755443 699999999884
No 112
>KOG3705|consensus
Probab=24.29 E-value=53 Score=33.94 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeeEEEeCCCCcccceeccccccc
Q psy13521 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47 (366)
Q Consensus 3 ~~dELSF~kGD~l~Il~~~d~dWw~~~~~~tg~~GlVPsnyV~~~ 47 (366)
..+|+.++.||.+-|-..-=++.-.+....+++.|++|+--|...
T Consensus 522 t~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek 566 (580)
T KOG3705|consen 522 TNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREK 566 (580)
T ss_pred cccccCcccCCeeeecccccccccccccccccccCCCccceeeee
Confidence 457999999999987543212333455567789999998777643
No 113
>cd04365 IlGF_relaxin_like IlGF_like family, relaxin_like subgroup, specific to vertebrates. Members include a number of active peptides including (pro)relaxin, mammalian Leydig cell-specific insulin-like peptide (gene INSL3), early placenta insulin-like peptide (ELIP; gene INSL4), and insulin-like peptides 5 (INSL5) and 6 (INSL6). Members of this subgroup are widely expressed in testes (INSL3, INSL6), decidua, placenta, prostate, corpus luteum, brain (various relaxins), GI tract, and kidney (INSL5) where they serve a variety of functions in parturition and development. Typically, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propepti
Probab=23.62 E-value=49 Score=24.48 Aligned_cols=14 Identities=36% Similarity=0.928 Sum_probs=12.7
Q ss_pred HHHHHhhhhhcccc
Q psy13521 283 AVVKALADVCHGDR 296 (366)
Q Consensus 283 ~~~~~~~~~~~~~~ 296 (366)
+.|.||+.+||.+|
T Consensus 8 ~lvr~l~~~Cg~~~ 21 (59)
T cd04365 8 ELVRAVIEICGGSR 21 (59)
T ss_pred HHHHHHHHHCCCCC
Confidence 67999999999987
No 114
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=23.56 E-value=73 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=23.5
Q ss_pred HhcCCCCcEEEecCCCCCCceEEEEeecC
Q psy13521 73 LVKAGPGSFLVRPSDNSPGDYSLFFHINN 101 (366)
Q Consensus 73 L~~~~~GsFLVR~S~s~pg~y~LSv~~~~ 101 (366)
+.+..+|+|.|.-.-..+|.|.|++..++
T Consensus 50 v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 50 VKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred EEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 34455899999988888899999998865
No 115
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.50 E-value=1.5e+02 Score=24.00 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=25.9
Q ss_pred cceeEeecCCCCCCceEEEEEeC--CeEEEEEEe
Q psy13521 163 HKSFLVRPSDNSPGDYSLFFHIN--NQIQRFRIE 194 (366)
Q Consensus 163 ~G~FLVR~S~~~~g~y~LSfv~~--~~V~HykI~ 194 (366)
.-++|.+.+...++|...+|++. +.+.+|+-.
T Consensus 3 k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~ 36 (102)
T cd01241 3 KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEK 36 (102)
T ss_pred EEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecC
Confidence 35789998888899999999994 678888654
No 116
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=23.42 E-value=58 Score=28.60 Aligned_cols=27 Identities=15% Similarity=0.491 Sum_probs=21.9
Q ss_pred ccccceecCCC--CccCccCcceeeeecc
Q psy13521 234 RTEDWFSLAGV--TPIGEWGSLRLKFRYS 260 (366)
Q Consensus 234 ~~d~W~~l~~~--~p~~~~g~~~~~~~~~ 260 (366)
..|.|++|.+. .|...-|+|++++||.
T Consensus 130 ~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 130 PVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 36899999764 5677789999999984
No 117
>KOG3697|consensus
Probab=23.34 E-value=1.2e+02 Score=30.04 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=43.4
Q ss_pred CCCCCceEEEEEeCCeEEEEEEeecCeEEEcCCCccCCHHHHHHHHHhccc--cc---ccccCCCC
Q psy13521 172 DNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQI--VE---GHTLGFPV 232 (366)
Q Consensus 172 ~~~~g~y~LSfv~~~~V~HykI~~~~~~yi~~~~~F~sL~eLV~~Y~~~~i--~~---~~~L~~pv 232 (366)
...+|-|+|.=.-+++-||..+-...+.--..++.|+|+..||+|.-.+++ .- -.+|..||
T Consensus 276 ~~~~gqyvltgl~~~~~khlllvdpegvvrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv 341 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPV 341 (345)
T ss_pred cCCCccEEEecccCCCcceEEEECCccceecccchhhHHHHHHHHhhhccCceecCcchhhhhCcc
Confidence 445888988833388999997755556666778899999999999877432 22 23466666
No 118
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.85 E-value=1.6e+02 Score=22.40 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=22.6
Q ss_pred ceeEeecCCC-CCCceEEEEEe-CCeEEEEEEee
Q psy13521 164 KSFLVRPSDN-SPGDYSLFFHI-NNQIQRFRIEK 195 (366)
Q Consensus 164 G~FLVR~S~~-~~g~y~LSfv~-~~~V~HykI~~ 195 (366)
.+||.+.+.. ..+|...+|++ ++.+.+|+-+.
T Consensus 2 ~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~ 35 (94)
T cd01250 2 QGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLK 35 (94)
T ss_pred cceEEEECCCcCCCceEEEEEEeCCeEEEEcCCc
Confidence 4677766544 57899998888 77777776543
Done!