RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13521
(366 letters)
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 117 bits (294), Expect = 3e-31
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 35/212 (16%)
Query: 58 DWFH-----PECTKNDAVDMLVKAG------PGSFLVRPSDNSPGDYSLFFHINNQIQRF 106
WFH ++ A +L + GSFLVR S+ GDY+L F N ++Q
Sbjct: 5 KWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHC 64
Query: 107 RIEKKAVR-----YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGS 161
RI + +L F+ L +I Y++ + + + +K
Sbjct: 65 RIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEW 124
Query: 162 CHK------------------SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMG 203
H +FLVR N P Y++ F +I+ R++++ ++G
Sbjct: 125 YHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRVQQEGQTVMLG 183
Query: 204 GRTFECLDAVINRYRKEQIVEGHTLGFPVTRT 235
F+ L +I+ Y K + L +P+
Sbjct: 184 NSEFDSLVDLISYYEKHPLYRKMKLRYPINEE 215
Score = 88.8 bits (220), Expect = 1e-20
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 6 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECT 65
+ +F +L + V + + + + +W+H T
Sbjct: 76 KFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEP-----VPQTNAHESKEWYHASLT 130
Query: 66 KNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFEC 124
+ A ML++ G+FLVR N P Y++ F +I+ R++++ ++G F+
Sbjct: 131 RAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDS 189
Query: 125 LDAVINRYRKEQIVEGHTLGFPVTR 149
L +I+ Y K + L +P+
Sbjct: 190 LVDLISYYEKHPLYRKMKLRYPINE 214
Score = 51.1 bits (122), Expect = 1e-07
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVINRYRK 219
SFLVR S+ GDY+L F N ++Q RI + +L F+ L +I Y++
Sbjct: 38 SFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQ 97
Query: 220 EQIVEGHTLGFPVTRTEDW 238
+
Sbjct: 98 VPLRCNEFEMRLSEPVPQT 116
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 107 bits (270), Expect = 6e-29
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 46 DLDETIDPNTVFDWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQ 104
DP+ WFH + +K +A ++L+ G SFLVRPSDN+PGDYSL+F N IQ
Sbjct: 5 SSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQ 64
Query: 105 RFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
RF+I ++MGGR + + +I+ YRKEQIVEG+ L PV +
Sbjct: 65 RFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQS 114
Score = 81.2 bits (201), Expect = 4e-19
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQIV 223
SFLVRPSDN+PGDYSL+F N IQRF+I ++MGGR + + +I+ YRKEQIV
Sbjct: 40 SFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIV 99
Query: 224 EGHTLGFPVTR 234
EG+ L PV
Sbjct: 100 EGYYLKEPVPM 110
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 98.6 bits (245), Expect = 2e-24
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
DEL+F++GDI V NE D W A G+ G I ++ +E WF
Sbjct: 12 TADDELSFKRGDILKVLNEECDQN-WYKAELNGKDGFIPKNYIEMKPH--------PWFF 62
Query: 62 PECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGG 119
+ + A +ML K G+FL+R S+++PGD+SL N +Q F++ + +Y +
Sbjct: 63 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV 122
Query: 120 RTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
F L+ +++ +R + + Q
Sbjct: 123 VKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 156
Score = 48.5 bits (115), Expect = 8e-07
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 158 TKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINR 216
+K +FL+R S+++PGD+SL N +Q F++ + +Y + F L+ +++
Sbjct: 75 SKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDY 134
Query: 217 YRKEQIVEGHTLGFPVTR--TEDWFSLAGVTPIGEWGSLRLKFR 258
+R + + + + + L FR
Sbjct: 135 HRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFR 178
Score = 45.8 bits (108), Expect = 5e-06
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETI 51
+ EL F++GD V + W W G+ GM R+ V ++ +
Sbjct: 169 PQEDGELGFRRGDFIHVMDNSDPNW-W-KGACHGQTGMFPRNYVTPVNRNV 217
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 98.7 bits (246), Expect = 6e-23
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
+ L+ KG+ V +G W A QG + + + +++ W+H
Sbjct: 58 NTLSITKGEKLRVLGYNHNGE-WCEAQTKNGQGWVPSNYIT-PVNSLEK---HSWYHGPV 112
Query: 65 TKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTF 122
++N A +L GSFLVR S++SPG S+ ++ +RI + Y+ F
Sbjct: 113 SRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRF 172
Query: 123 ECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
L +++ + TL +P + ++
Sbjct: 173 NTLAELVHHHSTVADGLITTLHYPAPKRNKP 203
Score = 52.9 bits (127), Expect = 7e-08
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 222
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ +
Sbjct: 128 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVAD 187
Query: 223 VEGHTLGFPVTRTEDWFSLAGVTPIGEW 250
TL +P + +W
Sbjct: 188 GLITTLHYPAPKRNKPTIYGVSPNYDKW 215
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 87.6 bits (217), Expect = 1e-21
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA------ 112
W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61
Query: 113 ------------VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
R +G + F+ L A++ Y+ + TL PV+R
Sbjct: 62 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT-TTLIEPVSR 109
Score = 66.4 bits (162), Expect = 6e-14
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 159 KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA------------------VRY 200
+G H FLVR S SPGDY L N+++ + I R
Sbjct: 17 QGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRL 76
Query: 201 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 234
+G + F+ L A++ Y+ + TL PV+R
Sbjct: 77 RIGDQEFDSLPALLEFYKIHYLDT-TTLIEPVSR 109
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 89.4 bits (221), Expect = 2e-21
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
+L F+KG+ + + G+ W + TG++G I + + WF
Sbjct: 24 SHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFI----PFNFVAKANSLEPEPWFF 78
Query: 62 PECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR----- 114
++ DA L+ G GSFL+R S+++ G +SL +Q Q ++ +R
Sbjct: 79 KNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 138
Query: 115 --YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 148
Y+ TF L ++ Y L P
Sbjct: 139 GFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ 174
Score = 52.4 bits (125), Expect = 2e-08
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR------ 199
++R + ++ G+ H SFL+R S+++ G +SL +Q Q ++ +R
Sbjct: 80 NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 139
Query: 200 -YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 233
Y+ TF L ++ Y L P
Sbjct: 140 FYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ 174
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 86.1 bits (214), Expect = 3e-21
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYL 116
+WFH +++ A ++L+ G F++R S +SPGD+S+ + +Q F++ + Y
Sbjct: 10 EWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYF 69
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTL 143
+ F L+ +++ YR I + +
Sbjct: 70 LWTEKFPSLNKLVDYYRTTSISKQKQV 96
Score = 64.9 bits (159), Expect = 2e-13
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 223
F++R S +SPGD+S+ + +Q F++ + Y + F L+ +++ YR I
Sbjct: 32 FFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSIS 91
Query: 224 EGHTL 228
+ +
Sbjct: 92 KQKQV 96
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 90.0 bits (223), Expect = 6e-21
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 25 WLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAG--PGSFL 82
W EQ +I + + + W+H T+ +A L G FL
Sbjct: 127 QTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFL 186
Query: 83 VRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQIVEG 140
+RP G Y+L + + I + + G F+ L ++ + +
Sbjct: 187 LRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLI 245
Query: 141 HTLGFPV 147
+ L
Sbjct: 246 YCLKEAC 252
Score = 75.3 bits (185), Expect = 1e-15
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
DP +F+ ++ +A + L AG G FL+R S G Y L + + F IE
Sbjct: 1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 60
Query: 110 KKAVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQW 154
++ + GG+ + Y ++ L P R S
Sbjct: 61 RQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLE 107
Score = 63.0 bits (153), Expect = 1e-11
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
FL+RP G Y+L + + I + + G F+ L ++ + +
Sbjct: 184 KFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKAD 242
Query: 223 VEGHTLGFPV 232
+ L
Sbjct: 243 GLIYCLKEAC 252
Score = 53.0 bits (127), Expect = 3e-08
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
FL+R S G Y L + + F IE++ + GG+ + Y ++
Sbjct: 31 LFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPD 90
Query: 223 VEGHTLGFPVTRTEDWFSLAGVTPIGEWGSLRLKFRYSHDLVMPSEEY 270
L P R GV +R R + L + E
Sbjct: 91 GLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQ 138
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 92.4 bits (230), Expect = 6e-21
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD--ETIDPNTVFDWFHP 62
+L F KGD+ + D + ++ G +G+I + V+ + + ++ WFH
Sbjct: 26 QDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHG 85
Query: 63 ECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRT 121
+ T+ A +L G FLVR S N PGDY+L +++ +RI A + +
Sbjct: 86 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145
Query: 122 FECLDAVINRYRKEQIVEGHTLGFPVTR 149
FE L ++ Y + L P
Sbjct: 146 FENLMQLVEHYTTDADGLCTRLIKPKVM 173
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 163 HKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQ 221
FLVR S N PGDY+L +++ +RI A + + FE L ++ Y +
Sbjct: 101 TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDA 160
Query: 222 IVEGHTLGFPVTR 234
L P
Sbjct: 161 DGLCTRLIKPKVM 173
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 88.4 bits (219), Expect = 2e-20
Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 5/140 (3%)
Query: 15 FFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLV 74
W + EQ +I + + + WFH + ++ ++ +++
Sbjct: 116 KENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVL 175
Query: 75 KAGP--GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVIN 130
G FL+R D + G Y+L ++ +RI+K + G+ F+ L ++
Sbjct: 176 IGSKTNGKFLIRARD-NNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVE 234
Query: 131 RYRKEQIVEGHTLGFPVTRM 150
Y + L P ++
Sbjct: 235 HYSYKADGLLRVLTVPCQKI 254
Score = 72.6 bits (178), Expect = 7e-15
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 59 WFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-- 114
+F T+ +A D LV+ G G +L+R S N G ++L + + IE++
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66
Query: 115 YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQW 154
+ GGRT + + + +E L P R
Sbjct: 67 AIAGGRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQ 106
Score = 62.2 bits (151), Expect = 3e-11
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 222
FL+R D + G Y+L ++ +RI+K + G+ F+ L ++ Y +
Sbjct: 183 KFLIRARD-NNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKAD 241
Query: 223 VEGHTLGFPVTR 234
L P +
Sbjct: 242 GLLRVLTVPCQK 253
Score = 53.8 bits (129), Expect = 2e-08
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKE 220
+L+R S N G ++L + + IE++ + GGRT + + + +E
Sbjct: 30 LYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCHYHSQE 87
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 84.2 bits (209), Expect = 3e-20
Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WF + ++L G++L+R +++ N++++ ++ +K +
Sbjct: 17 PWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHI 76
Query: 117 MGGRTFECLDAVINRYRKEQIVEG-----HTLGFPVTR 149
+ F+ L ++ Y+ + E TL +P +
Sbjct: 77 TEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
Score = 64.2 bits (157), Expect = 5e-13
Identities = 11/78 (14%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 223
++L+R +++ N++++ ++ +K + + F+ L ++ Y+ +
Sbjct: 39 TYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLK 98
Query: 224 EG-----HTLGFPVTRTE 236
E TL +P +
Sbjct: 99 ESFKQLDTTLKYPYSGPS 116
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 84.2 bits (209), Expect = 3e-20
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK 110
+P+ W++ ++ +A DML++ G+FL+R + Y++ F +++ RI +
Sbjct: 14 NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINR 72
Query: 111 KAVRY-LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR-MSRQWKIATKG 160
+ L FE L +++ Y K + L +PVT + ++ + G
Sbjct: 73 DGRHFVLGTSAYFESLVELVSYYEKHALYRKMRLRYPVTPELLERYSGPSSG 124
Score = 65.7 bits (161), Expect = 1e-13
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 223
+FL+R + Y++ F +++ RI + + L FE L +++ Y K +
Sbjct: 43 AFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALY 101
Query: 224 EGHTLGFPVTR-TEDWFS 240
L +PVT + +S
Sbjct: 102 RKMRLRYPVTPELLERYS 119
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 82.2 bits (204), Expect = 9e-20
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RY 115
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + +Y
Sbjct: 4 AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 63
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTL 143
+ F L+ +++ +R + +
Sbjct: 64 FLWVVKFNSLNELVDYHRSTSVSRNQQI 91
Score = 63.0 bits (154), Expect = 8e-13
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 223
+FL+R S+++PGD+SL N +Q F++ + +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 86
Query: 224 EGHTL 228
+
Sbjct: 87 RNQQI 91
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 81.9 bits (203), Expect = 2e-19
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 33 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGD 92
+G GM + D + W+ ++ +A L G FLVR S PGD
Sbjct: 3 SGSSGMSSARFD-----SSDRS---AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGD 54
Query: 93 YSLFFHINNQIQRFRIEK-KAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
Y L N+++ + I R+ +G + F+ L A++ Y+ + TL P R
Sbjct: 55 YVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDT-TTLIEPAPR 111
Score = 61.1 bits (149), Expect = 5e-12
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGGRTFECLDAVINRYRKEQIV 223
FLVR S PGDY L N+++ + I R+ +G + F+ L A++ Y+ +
Sbjct: 42 MFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLD 101
Query: 224 EGHTLGFPVTR 234
TL P R
Sbjct: 102 T-TTLIEPAPR 111
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 80.7 bits (200), Expect = 3e-19
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL 116
+W++ T++ A L + G G FL+R S++SP D+S+ + + + F+++ Y
Sbjct: 6 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 65
Query: 117 MGGRTFECLDAVINRYRKEQIVEG 140
+G R F +D ++ Y+K I
Sbjct: 66 IGQRRFHTMDELVEHYKKAPIFTS 89
Score = 61.5 bits (150), Expect = 3e-12
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 224
FL+R S++SP D+S+ + + + F+++ Y +G R F +D ++ Y+K I
Sbjct: 29 DFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIFT 88
Query: 225 G 225
Sbjct: 89 S 89
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 80.1 bits (198), Expect = 7e-19
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAG---PGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
P + + WFH ++ A ++++ G G FLVR S+ G+ L F+ + + R+
Sbjct: 4 QPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRL 63
Query: 109 EKKA-VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 148
A + + F+ + ++ +R I V
Sbjct: 64 SLNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVV 104
Score = 63.1 bits (154), Expect = 9e-13
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRYLMGGRTFECLDAVINRYRKEQIV 223
FLVR S+ G+ L F+ + + R+ A + + F+ + ++ +R I
Sbjct: 35 VFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDMLEHFRVHPIP 94
Query: 224 EGHTLGFPVTRTE 236
V
Sbjct: 95 LESGGSSDVVLVS 107
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 86.3 bits (214), Expect = 8e-19
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
++L+FQKGD V E G+ W + T ++G I + V ++++ +WF
Sbjct: 23 EDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA-RVDSLE---TEEWFFKGI 77
Query: 65 TKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--Y 115
++ DA L+ G GSF++R S+ + G YSL + ++ ++I Y
Sbjct: 78 SRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFY 137
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
+ TF L +++ Y+K L P Q
Sbjct: 138 ISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQ 175
Score = 48.9 bits (117), Expect = 1e-06
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 160 GSCHKSFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDA 212
G+ SF++R S+ + G YSL + ++ ++I Y+ TF L
Sbjct: 90 GNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQE 149
Query: 213 VINRYRKEQIVEGHTLGFPVTRTEDWF 239
+++ Y+K L P ++
Sbjct: 150 LVDHYKKGNDGLCQKLSVPCMSSKPQK 176
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 86.4 bits (214), Expect = 9e-19
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 33/199 (16%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFHP T +A ++L+ G GSFL RPS ++PGD +L N + +I+ Y L
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDL 65
Query: 117 MGGRTFECLDAVINRYRKEQ---------IVEGHTLGFPVTRMSRQW-----------KI 156
GG F L ++ Y + ++E S +W K+
Sbjct: 66 YGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKL 125
Query: 157 ATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM-----------GGR 205
T+ H SFLVR S + PGD+ L + K V ++M GG
Sbjct: 126 LTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGE 185
Query: 206 TFECLDAVINRYRKEQIVE 224
F+ L ++ Y+K +VE
Sbjct: 186 RFDSLTDLVEHYKKNPMVE 204
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 80.1 bits (198), Expect = 1e-18
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
DW+H + +A ++L K G FLVR S PG+Y L + + Q + F I+ Y
Sbjct: 18 DWYHGAIPRIEAQELLKK--QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRF 75
Query: 118 GGRTFECLDAVINRYRKEQIV----EGHTLGFPVTRMSRQW 154
G F + +I+ + + V G L P+ + ++W
Sbjct: 76 EGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPK-DKKW 115
Score = 68.5 bits (168), Expect = 1e-14
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIV- 223
FLVR S PG+Y L + + Q + F I+ Y G F + +I+ + + V
Sbjct: 38 DFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQVI 97
Query: 224 ---EGHTLGFPVTRTEDW 238
G L P+ + + W
Sbjct: 98 TKKSGVVLLNPIPKDKKW 115
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 79.2 bits (196), Expect = 1e-18
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFH + T+ A +L G FLVR S N PGDY+L + +++ +RI A + +
Sbjct: 9 PWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSI 68
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
FE L ++ Y + L P
Sbjct: 69 DEEVYFENLMQLVEHYTSDADGLCTRLIKPKVM 101
Score = 58.4 bits (142), Expect = 4e-11
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 223
FLVR S N PGDY+L + +++ +RI A + + FE L ++ Y +
Sbjct: 31 LFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTSDADG 90
Query: 224 EGHTLGFPVTR 234
L P
Sbjct: 91 LCTRLIKPKVM 101
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 79.3 bits (196), Expect = 2e-18
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RY 115
WF + + A +ML K G+FL+R S+++PGD+SL N +Q F++ + +Y
Sbjct: 7 PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 66
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
+ F L+ +++ +R + +
Sbjct: 67 FLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIE 100
Score = 61.2 bits (149), Expect = 6e-12
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 223
+FL+R S+++PGD+SL N +Q F++ + +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 89
Query: 224 EGHTLGFPVTR 234
+
Sbjct: 90 RNQQIFLRDIE 100
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 78.8 bits (195), Expect = 3e-18
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--Y 115
W+H +++ A +L GSFLVR S++SPG S+ ++ +RI A Y
Sbjct: 17 SWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVY 76
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
+ F L +++ + TL +P + ++
Sbjct: 77 VTAESRFSTLAELVHHHSTVADGLVTTLHYPAPKCNKS 114
Score = 58.4 bits (142), Expect = 5e-11
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
SFLVR S++SPG S+ ++ +RI A Y+ F L +++ +
Sbjct: 39 SFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHHSTVAD 98
Query: 223 VEGHTLGFPVTRTE 236
TL +P +
Sbjct: 99 GLVTTLHYPAPKCN 112
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 78.5 bits (194), Expect = 4e-18
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR- 114
WF + DA L+ + G+FL+R S++ GD+SL ++ +RI +
Sbjct: 17 PWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGG 76
Query: 115 -YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
+L + F L+ +N Y L P ++
Sbjct: 77 FFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKIQVS 116
Score = 60.8 bits (148), Expect = 9e-12
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
+FL+R S++ GD+SL ++ +RI + +L + F L+ +N Y
Sbjct: 41 AFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSD 100
Query: 223 VEGHTLGFPVTRTE 236
L P + +
Sbjct: 101 GLCVKLEKPCLKIQ 114
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 77.7 bits (192), Expect = 6e-18
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRY 115
WFHP T +A ++L+ G GSFL RPS ++PGD++L N + +I+
Sbjct: 8 RWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYD 67
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 148
L GG F L ++ Y + G +
Sbjct: 68 LYGGEKFATLAELVQYYMEHHGQLKEKNGDVIE 100
Score = 59.6 bits (145), Expect = 2e-11
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRYLMGGRTFECLDAVINRYR----- 218
SFL RPS ++PGD++L N + +I+ L GG F L ++ Y
Sbjct: 31 SFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQ 90
Query: 219 -KEQIVEGHTLGFPVTRTE 236
KE+ + L +P+ +
Sbjct: 91 LKEKNGDVIELKYPLNCAD 109
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 76.6 bits (189), Expect = 2e-17
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--- 112
WFH + ++++A ++++ G G FLVR S ++P + L +I+ F+I
Sbjct: 27 PWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDG 86
Query: 113 ---VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
G F L ++ Y+ + V L R
Sbjct: 87 EMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPCKLKHYCAR 126
Score = 59.3 bits (144), Expect = 3e-11
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 149 RMSRQ---WKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA------VR 199
++SR I +G FLVR S ++P + L +I+ F+I
Sbjct: 32 KISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHT 91
Query: 200 YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 234
G F L ++ Y+ + V L R
Sbjct: 92 LDDGHTRFTDLIQLVEFYQLNKGVLPCKLKHYCAR 126
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 76.2 bits (188), Expect = 2e-17
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
W H T++ A ++L + G GSFLVR S++ Y+L N + +RI
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 118 -------GGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
R F LD +I Y+KE + L +PV
Sbjct: 72 VQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPL 110
Score = 58.1 bits (141), Expect = 7e-11
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM-------GGRTFECLDAVINRY 217
SFLVR S++ Y+L N + +RI R F LD +I Y
Sbjct: 34 SFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFY 93
Query: 218 RKEQIVEGHTLGFPVTRTE 236
+KE + L +PV E
Sbjct: 94 KKENMGLVTHLQYPVPLEE 112
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 76.6 bits (189), Expect = 2e-17
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK 111
+V W+ + A +L G+FLVR ++++ N +++ +I
Sbjct: 21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTA 80
Query: 112 -AVRYLMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTR 149
+ + + F L ++ Y++ + + TL FP
Sbjct: 81 EGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
Score = 56.6 bits (137), Expect = 4e-10
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 223
+FLVR ++++ N +++ +I + + + F L ++ Y++ +
Sbjct: 49 TFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLK 108
Query: 224 EGH-----TLGFPVTRTEDW 238
+ TL FP E
Sbjct: 109 DCFKSLDTTLQFPFKEPEKR 128
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 75.3 bits (186), Expect = 3e-17
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
WFH + + +AV L G FLVR S PGDY L + +R+ + +
Sbjct: 6 PWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTI 65
Query: 118 GGR-TFECLDAVINRYRKEQIVEGHTLGFPVTR 149
F L ++ Y K++ L P +
Sbjct: 66 DEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 98
Score = 55.7 bits (135), Expect = 3e-10
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR-TFECLDAVINRYRKEQIV 223
FLVR S PGDY L + +R+ + + F L ++ Y K++
Sbjct: 28 LFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHYSKDKGA 87
Query: 224 EGHTLGFPVTR 234
L P +
Sbjct: 88 ICTKLVRPKRK 98
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 75.8 bits (187), Expect = 3e-17
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY 115
WFH ++ ++ ++ + G G FLVR S +P + L +++ + I
Sbjct: 15 LWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEG 74
Query: 116 LM------GGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMS 151
+ G F L ++ ++ + + L TR++
Sbjct: 75 RLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVA 116
Score = 58.5 bits (142), Expect = 4e-11
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 149 RMSRQ---WKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM--- 202
R+SR+ I +G FLVR S +P + L +++ + I +
Sbjct: 20 RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 79
Query: 203 ---GGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 234
G F L ++ ++ + + L TR
Sbjct: 80 MDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTR 114
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 73.2 bits (180), Expect = 8e-17
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
PDTDE++F KGD+F VHNEL DGW+WVT RT EQG+I DLVE++
Sbjct: 18 PDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 74.1 bits (183), Expect = 9e-17
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR- 114
WF ++++AV L G G+FL+R S+ DY L ++ ++I ++A
Sbjct: 3 PWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGR 62
Query: 115 -YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
+L +F L ++N +R + + G L P +
Sbjct: 63 LHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98
Score = 56.8 bits (138), Expect = 1e-10
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
+FL+R S+ DY L ++ ++I ++A +L +F L ++N +R + +
Sbjct: 27 AFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSL 86
Query: 223 VEGHTLGFPVTRTE 236
G L P + E
Sbjct: 87 SHGLRLAAPCRKHE 100
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 74.2 bits (183), Expect = 9e-17
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
WFH + ++ +A +L G FLVR S +PG Y L + Q + +
Sbjct: 8 PWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRT 65
Query: 118 GGRTFECLDAVINRYRKEQIV-----EGHTLGFPVTR 149
FE + +I+ + + L PV R
Sbjct: 66 KDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
Score = 59.2 bits (144), Expect = 2e-11
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIV- 223
FLVR S +PG Y L + Q + + FE + +I+ + +
Sbjct: 28 DFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPI 87
Query: 224 ----EGHTLGFPVTRT 235
L PV R
Sbjct: 88 ISAGSELCLQQPVERK 103
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 73.8 bits (182), Expect = 1e-16
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY 115
WFH ++ ++ ++ + G G FL+R S ++P + L + +I+ F+I
Sbjct: 6 HWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDG 65
Query: 116 LM------GGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
G F L +++ Y+ + V L R
Sbjct: 66 QTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPCKLKHHCIR 105
Score = 56.9 bits (138), Expect = 1e-10
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 149 RMSRQ---WKIATKGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM--- 202
R+SR+ I +G FL+R S ++P + L + +I+ F+I
Sbjct: 11 RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70
Query: 203 ---GGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 234
G F L +++ Y+ + V L R
Sbjct: 71 LDDGNTKFSDLIQLVDFYQLNKGVLPCKLKHHCIR 105
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 73.5 bits (181), Expect = 3e-16
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 51 IDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK 110
+ + V +WFH ++ DA ++L GSFL+R S + G Y+L + + F ++
Sbjct: 10 LAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKL 68
Query: 111 KAV-RYLMGGR--TFECLDAVINRYRKEQIVE-GHTLGFPVTR 149
+++ G LDA++ ++++ I L P +
Sbjct: 69 LDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 111
Score = 50.8 bits (122), Expect = 2e-08
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGR--TFECLDAVINRYRKEQ 221
SFL+R S + G Y+L + + F ++ +++ G LDA++ ++++
Sbjct: 39 SFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKP 97
Query: 222 IVE-GHTLGFPVTRTE 236
I L P + +
Sbjct: 98 IEPRRELLTQPCRQKD 113
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 71.2 bits (175), Expect = 5e-16
Identities = 31/48 (64%), Positives = 38/48 (79%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
PDTDE++F KGD+F VHNEL DGW+WVT RT EQG+I DLVE++
Sbjct: 20 PDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 71.5 bits (176), Expect = 1e-15
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--Y 115
W+H ++N A +L GSFLVR S++SPG S+ ++ +RI + Y
Sbjct: 6 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 65
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQW 154
+ F L +++ + TL +P + ++
Sbjct: 66 VSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPT 104
Score = 54.5 bits (132), Expect = 1e-09
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ +
Sbjct: 28 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVAD 87
Query: 223 VEGHTLGFPVTRTE 236
TL +P +
Sbjct: 88 GLITTLHYPAPKRN 101
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 76.7 bits (189), Expect = 1e-15
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
+L+F+KG+ + N W + TG+ G I + V D +W+ +
Sbjct: 17 TDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP----SDSIQAEEWYFGKI 72
Query: 65 TKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--Y 115
T+ ++ +L+ A G+FLVR S+ + G Y L ++ ++I K Y
Sbjct: 73 TRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFY 132
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
+ F L ++ Y K H L Q
Sbjct: 133 ITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQ 170
Score = 40.9 bits (96), Expect = 5e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 160 GSCHKSFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDA 212
+ +FLVR S+ + G Y L ++ ++I K Y+ F L
Sbjct: 85 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQ 144
Query: 213 VINRYRKEQIVEGHTLGFPVTRTED 237
++ Y K H L ++
Sbjct: 145 LVAYYSKHADGLCHRLTTVCPTSKP 169
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 70.8 bits (174), Expect = 2e-15
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--Y 115
W +N A ++L G+FLVR S G Y+ ++ +++ I K A +
Sbjct: 11 TWNVGSSNRNKAENLLRGKRDGTFLVRESSK-QGCYACSVVVDGEVKHCVINKTATGYGF 69
Query: 116 LMGGRTFECLDAVINRYRKEQIVEG-----HTLGFPVTRMSRQ 153
+ L ++ Y+ +V+ TL +PV R+
Sbjct: 70 AEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQQRR 112
Score = 48.8 bits (117), Expect = 1e-07
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
+FLVR S G Y+ ++ +++ I K A + + L ++ Y+ +
Sbjct: 33 TFLVRESSK-QGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSL 91
Query: 223 VEG-----HTLGFPVTRTE 236
V+ TL +PV +
Sbjct: 92 VQHNDSLNVTLAYPVYAQQ 110
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 76.5 bits (188), Expect = 2e-15
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
+L+F+KG+ + N W + TG+ G I + V D +W+ +
Sbjct: 100 TDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP----SDSIQAEEWYFGKI 155
Query: 65 TKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--Y 115
T+ ++ +L+ A G+FLVR S+ + G Y L ++ ++I K Y
Sbjct: 156 TRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFY 215
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
+ F L ++ Y K H L Q
Sbjct: 216 ITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQ 253
Score = 42.6 bits (100), Expect = 1e-04
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 165 SFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRY 217
+FLVR S+ + G Y L ++ ++I K Y+ F L ++ Y
Sbjct: 173 TFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 232
Query: 218 RKEQIVEGHTLGFPVTRTED 237
K H L ++
Sbjct: 233 SKHADGLCHRLTTVCPTSKP 252
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 70.0 bits (172), Expect = 3e-15
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 58 DWFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA---- 112
+H + ++ +L+ G GS+L+R S++ PG Y L + I +R+ +
Sbjct: 5 AVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW 64
Query: 113 ---VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
+ R F + +I+ ++K L +PV +
Sbjct: 65 SAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK 104
Score = 52.3 bits (126), Expect = 6e-09
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-------VRYLMGGRTFECLDAVINRY 217
S+L+R S++ PG Y L + I +R+ + + R F + +I+ +
Sbjct: 28 SYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAF 87
Query: 218 RKEQIVEGHTLGFPVTR 234
+K L +PV +
Sbjct: 88 QKPDQGIVIPLQYPVEK 104
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 69.4 bits (170), Expect = 8e-15
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 58 DWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA---- 112
+H + ++ +L+ G GS+L+R S++ PG Y L + I +R+ +
Sbjct: 5 AVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW 64
Query: 113 ---VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
+ R F + +I+ ++K L +PV +
Sbjct: 65 SAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK 104
Score = 52.0 bits (125), Expect = 1e-08
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-------VRYLMGGRTFECLDAVINRY 217
S+L+R S++ PG Y L + I +R+ + + R F + +I+ +
Sbjct: 28 SYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAF 87
Query: 218 RKEQIVEGHTLGFPVTRTE 236
+K L +PV +
Sbjct: 88 QKPDQGIVIPLQYPVEKKS 106
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 68.9 bits (169), Expect = 9e-15
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSL----FFHINNQIQRFRIEKK 111
WF ++ DA L+ GSFL+R S+++ G +SL ++ ++I
Sbjct: 13 KWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSL 72
Query: 112 AVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRM 150
Y+ TF L A++ Y K+ L P +
Sbjct: 73 DNGGYYISPRITFPTLQALVQHYSKKGDGLCQKLTLPCVNL 113
Score = 50.0 bits (120), Expect = 4e-08
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 165 SFLVRPSDNSPGDYSL----FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYR 218
SFL+R S+++ G +SL ++ ++I Y+ TF L A++ Y
Sbjct: 37 SFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYS 96
Query: 219 KEQIVEGHTLGFPVTR 234
K+ L P
Sbjct: 97 KKGDGLCQKLTLPCVN 112
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 72.4 bits (176), Expect = 1e-14
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%)
Query: 50 TIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
D + W+ ++ +A L G FLVR S PGDY L N+++ + I
Sbjct: 5 RFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 64
Query: 110 KKAVR-YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFLV 168
R + +G + F+ L A++ Y+ + + S + + +
Sbjct: 65 SLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDN 124
Query: 169 RPSDNSPGDYS 179
+ D+
Sbjct: 125 LEYVRTLYDFP 135
Score = 53.5 bits (127), Expect = 3e-08
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 163 HKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQ 221
H FLVR S PGDY L N+++ + I R + +G + F+ L A++ Y+
Sbjct: 33 HGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHY 92
Query: 222 IVEGHTLGFPVTRTEDWFSLAGVTPIGEWGSLRLKFRYSHDLVMPSEE 269
+ + + R +D E
Sbjct: 93 LDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAE 140
Score = 51.2 bits (121), Expect = 2e-07
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 4/137 (2%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWF 60
D ++L F+KG+I + + + W W ++ G GMI VE L + +
Sbjct: 136 GNDAEDLPFKKGEILVIIEKPEEQW-WSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRN 194
Query: 61 HPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLF--FHINNQIQRFRIEKKAVRYLMG 118
+ + + L S + + + ++ Y
Sbjct: 195 SNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKT 254
Query: 119 GRTFECLDAVINRYRKE 135
E + ++ R
Sbjct: 255 ALALE-VGDIVKVTRMN 270
Score = 36.1 bits (82), Expect = 0.012
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
D L + GDI V +G W G +G+ V+ D
Sbjct: 252 DKTALALEVGDIVKVTRMNINGQ-W-EGEVNGRKGLFPFTHVKIFDPQ 297
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 72.4 bits (177), Expect = 2e-14
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWL----WVTAHRTGEQGMIFRDLVEDLDETIDPNTVF 57
PD +L + + G W+ E + + ++ + +
Sbjct: 139 PDLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYS----LMEDEDALPHHEER 194
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-- 115
W+ + + A +ML G+FL+R S G Y+ ++ + I + A +
Sbjct: 195 TWYVGKINRTQAEEMLSGKRDGTFLIRESSQ-RGCYACSVVVDGDTKHCVIYRTATGFGF 253
Query: 116 LMGGRTFECLDAVINRYRKEQIVEG-----HTLGFPVTRMSRQ 153
+ L ++ Y+ +V+ TL PV
Sbjct: 254 AEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGPG 296
Score = 47.0 bits (111), Expect = 4e-06
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY--LMGGRTFECLDAVINRYRKEQI 222
+FL+R S G Y+ ++ + I + A + + L ++ Y+ +
Sbjct: 217 TFLIRESSQ-RGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASL 275
Query: 223 VEG-----HTLGFPVTRTE 236
V+ TL PV
Sbjct: 276 VQHNDALTVTLAHPVRAPG 294
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 67.4 bits (165), Expect = 3e-14
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
W+H + + ++LV G FLVR S +Y L + + F I+ Y +
Sbjct: 17 LWYHGAIPRAEVAELLVH--SGDFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRL 73
Query: 118 GGRTFECLDAVINRYRKEQIV----EGHTLGFPVTR 149
G F + +I+ Q G L V
Sbjct: 74 EGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPS 109
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIV- 223
FLVR S +Y L + + F I+ Y + G F + +I+ Q
Sbjct: 37 DFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPL 95
Query: 224 ---EGHTLGFPVTR 234
G L V
Sbjct: 96 TKKSGVVLHRAVPS 109
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 67.7 bits (166), Expect = 4e-14
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 57 FDWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSL------FFHINNQIQRFRIE 109
++W+H T+N A +L + G+F+VR S G Y++ I+ ++I+
Sbjct: 16 YEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMGARRSTEAAIKHYQIK 74
Query: 110 KKAVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
K Y+ F+ + +I ++ L +PV M
Sbjct: 75 KNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMTRLRYPVGLMGSS 120
Score = 46.9 bits (112), Expect = 6e-07
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 165 SFLVRPSDNSPGDYSL------FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINR 216
+F+VR S G Y++ I+ ++I+K Y+ F+ + +I
Sbjct: 40 AFIVRDSR-HLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWY 98
Query: 217 YRKEQIVEGHTLGFPVTR 234
++ L +PV
Sbjct: 99 HQHNAAGLMTRLRYPVGL 116
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 67.6 bits (165), Expect = 5e-14
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 58 DWFHPE-CTKNDAVDMLVKAGP------GSFLVRPSDNSPGDYSLFFHINNQIQRFRIEK 110
WFH + ++ A +L + G+FLVR S+ P DY+L F + ++Q RI
Sbjct: 23 KWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRS 82
Query: 111 K-----AVRYLMGGRTFECLDAVINRYRKEQIVEG---HTLGFPVTR 149
YL TF + A+I YR+ + L PV
Sbjct: 83 TMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVPN 129
Score = 58.3 bits (141), Expect = 8e-11
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-----AVRYLMGGRTFECLDAVINRYRK 219
+FLVR S+ P DY+L F + ++Q RI YL TF + A+I YR+
Sbjct: 52 TFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYRE 111
Query: 220 EQIVEG---HTLGFPVTR 234
+ L PV
Sbjct: 112 AHLRCAEFELRLTDPVPN 129
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 66.5 bits (163), Expect = 5e-14
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEK 110
+W+ + + DA L+ G G+FL+R S+ + G YSL + ++ ++I K
Sbjct: 6 EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 65
Query: 111 KAVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
Y+ FE L ++ Y + L P +
Sbjct: 66 LDNGGYYITTRAQFETLQQLVQHYSERAAGLSSRLVVPSHK 106
Score = 49.9 bits (120), Expect = 4e-08
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 165 SFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRY 217
+FL+R S+ + G YSL + ++ ++I K Y+ FE L ++ Y
Sbjct: 30 TFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHY 89
Query: 218 RKEQIVEGHTLGFPVTR 234
+ L P +
Sbjct: 90 SERAAGLSSRLVVPSHK 106
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 66.2 bits (162), Expect = 1e-13
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPS-DNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR + GDY+L + +I + +Y
Sbjct: 12 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYG 71
Query: 116 LMGGRTFECLDAVINRYRKEQIVEG-----HTLGFPVTR 149
TF + +IN YR E + + L +PV++
Sbjct: 72 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
Score = 49.6 bits (119), Expect = 6e-08
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 165 SFLVRPS-DNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQI 222
+FLVR + GDY+L + +I + +Y TF + +IN YR E +
Sbjct: 34 TFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESL 93
Query: 223 VEG-----HTLGFPVTRTEDW 238
+ L +PV++ +
Sbjct: 94 AQYNPKLDVKLLYPVSKYQQD 114
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 65.4 bits (160), Expect = 1e-13
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL- 116
++H TK + +L+K G G+FL+R S++ PG L + +RI ++ Y
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64
Query: 117 ------MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
F L ++++Y K L P+ R
Sbjct: 65 IETDAHTPRTIFPNLQELVSKYGKPGQGLVVHLSNPIMR 103
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYL-------MGGRTFECLDAVINRY 217
+FL+R S++ PG L + +RI ++ Y F L ++++Y
Sbjct: 27 NFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSKY 86
Query: 218 RKEQIVEGHTLGFPVTR 234
K L P+ R
Sbjct: 87 GKPGQGLVVHLSNPIMR 103
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 66.9 bits (163), Expect = 1e-13
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
++ T +A +L G+FL+R S + ++L + + RI+ + + +
Sbjct: 24 GFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSL 83
Query: 118 GG--------RTFECLDAVINRYRKEQIVEGHT--LGFPVTRMSRQ 153
F+C+ +++ Y + P + + Q
Sbjct: 84 QSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQ 129
Score = 48.1 bits (114), Expect = 6e-07
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINR 216
+FL+R S + ++L + + RI+ + + + F+C+ +++
Sbjct: 46 TFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHH 105
Query: 217 YRKEQIVEGHTLGFPVTRTE 236
Y +L +E
Sbjct: 106 YMPPPGTPSFSLPPTEPSSE 125
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 65.6 bits (160), Expect = 3e-13
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-- 115
W+ T+ +A L GSFLVR S + SL F + + RIE R+
Sbjct: 25 GWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSF 84
Query: 116 --LMGGRTFECLDAVINRYRKE 135
+ +I +
Sbjct: 85 YEQPDVEGHTSIVDLIEHSIGD 106
Score = 48.6 bits (116), Expect = 2e-07
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY----LMGGRTFECLDAVINRYRKE 220
SFLVR S + SL F + + RIE R+ + +I +
Sbjct: 47 SFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGD 106
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 66.4 bits (162), Expect = 3e-13
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 47 LDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRF 106
L + + W+ T N+A + L +A G+FL+R S +S ++ +
Sbjct: 7 LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 66
Query: 107 RIEKKAVRYLMGG--------RTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
RIE + ++ + + F+ + +I+ Y + + P
Sbjct: 67 RIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNG 117
Score = 50.6 bits (121), Expect = 7e-08
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINR 216
+FL+R S +S ++ + RIE + ++ + + F+ + +I+
Sbjct: 40 TFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDY 99
Query: 217 YRKEQIVEGHTLGFPVTRTED 237
Y + + P T
Sbjct: 100 YVQMCKDKRTGPEAPRNGTVH 120
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 65.1 bits (159), Expect = 3e-13
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 49 ETIDPNTVFDWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSL------FFHINN 101
E D +++W+ T++ A +L + G G F+VR S G Y++
Sbjct: 3 EAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSK-AGKYTVSVFAKSTGDPQG 61
Query: 102 QIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ 153
I+ + + YL F + +IN ++ L +PV++ ++
Sbjct: 62 VIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVSQQNKN 115
Score = 44.3 bits (105), Expect = 5e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 165 SFLVRPSDNSPGDYSL------FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINR 216
F+VR S G Y++ I+ + + YL F + +IN
Sbjct: 35 GFIVRDSSK-AGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINY 93
Query: 217 YRKEQIVEGHTLGFPVTRTE 236
++ L +PV++
Sbjct: 94 HQHNSAGLISRLKYPVSQQN 113
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 70.0 bits (171), Expect = 3e-13
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
DP +F+ ++ +A + L AG G FL+R S G Y L + + F IE
Sbjct: 3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62
Query: 110 KKA--VRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFL 167
++ + GG+ + Y ++ L P R S C + +
Sbjct: 63 RQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAM 122
Query: 168 VRPSDNSPGDY 178
VR
Sbjct: 123 VRDYVRQTWKL 133
Score = 64.2 bits (156), Expect = 2e-11
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 8/130 (6%)
Query: 57 FDWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR 114
W+H T+ +A L G FL+RP G Y+L + + I +
Sbjct: 161 MPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAG 219
Query: 115 --YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ---WKIATKGSCHKSFLVR 169
+ G F+ L ++ + + + L S A H S L
Sbjct: 220 KYCIPEGTKFDTLWQLVEYLKLKADGLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTH 279
Query: 170 PSDNSPGDYS 179
P S
Sbjct: 280 PQRRIDTLNS 289
Score = 52.3 bits (125), Expect = 1e-07
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 160 GSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRY 217
G FL+R S G Y L + + F IE++ + GG+ + Y
Sbjct: 28 GMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFY 87
Query: 218 RKEQIVEGHTLGFPVTRTEDWFSLAGVTPIGEWGSLRLKFRYS 260
++ L P R GV +R R +
Sbjct: 88 SRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQT 130
Score = 43.0 bits (101), Expect = 1e-04
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 222
FL+RP G Y+L + + I + + G F+ L ++ + +
Sbjct: 186 KFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKAD 244
Query: 223 VEGHTLGFPVTR 234
+ L
Sbjct: 245 GLIYCLKEACPN 256
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 65.0 bits (158), Expect = 5e-13
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 31 HRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSP 90
+ + + + V L E+ ++ T +A +L G+FL+R S +
Sbjct: 15 FSSKSEYQLVVNAVRKLQES-------GFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQR 67
Query: 91 GDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINRYRKEQIVE 139
++L + + RI+ + + + F+ + +++ Y Q +
Sbjct: 68 HFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALP 124
Score = 46.1 bits (109), Expect = 2e-06
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINR 216
+FL+R S + ++L + + RI+ + + + F+ + +++
Sbjct: 57 TFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHH 116
Query: 217 YRKEQIVE 224
Y Q +
Sbjct: 117 YMPPQALP 124
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 66.1 bits (161), Expect = 5e-13
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM 117
+ K A +L G+FL+R S +S+ F ++ RIE+ +
Sbjct: 35 PCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSF 94
Query: 118 GGR-----TFECLDAVINRYRKEQIVEGHT--LGFPVTR 149
+ ++ Y+ L P+ R
Sbjct: 95 DAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIR 133
Score = 50.3 bits (120), Expect = 1e-07
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR-----TFECLDAVINRYRK 219
+FL+R S +S+ F ++ RIE+ + + ++ Y+
Sbjct: 57 TFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKD 116
Query: 220 EQIVEGHT--LGFPVTRT 235
L P+ RT
Sbjct: 117 PSACMFFEPLLSTPLIRT 134
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 68.3 bits (166), Expect = 5e-13
Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 13/194 (6%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPS-DNSPGDYSLFFHINNQIQRFRIEKKAVRY- 115
+W+ + ++ + + L G+FLVR + GDY+L + +I + +Y
Sbjct: 11 EWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYG 70
Query: 116 LMGGRTFECLDAVINRYRKEQIVEGH-----TLGFPVTRMSRQWKIATKGSCH-----KS 165
TF + +IN YR E + + + L +PV++ + +
Sbjct: 71 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNIEAVGKKLHE 130
Query: 166 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQIVE 224
+ + + S L+ Q ++++ A+ + + FE RY KE I +
Sbjct: 131 YNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEK 190
Query: 225 GHTLGFPVTRTEDW 238
G
Sbjct: 191 FKREGNEKEIQRIM 204
Score = 59.8 bits (144), Expect = 3e-10
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
PD +L + + G + G + + + + DE + + W
Sbjct: 247 PDLIQLRKTRDQYLMWLTQKGVRQKKLNEWL-GNENTEDQYSLVEDDEDLPHHDEKTWNV 305
Query: 62 PECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM--GG 119
+N A ++L G+FLVR S + G Y+ ++ +++ I K A Y
Sbjct: 306 GSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPY 364
Query: 120 RTFECL 125
+ L
Sbjct: 365 NLYSSL 370
Score = 38.3 bits (88), Expect = 0.003
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 159 KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM--GGRTFECL 210
+G +FLVR S + G Y+ ++ +++ I K A Y + L
Sbjct: 318 RGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSL 370
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 67.6 bits (165), Expect = 1e-12
Identities = 45/194 (23%), Positives = 69/194 (35%), Gaps = 29/194 (14%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFH + + DA +L G GSFL RPS + GD+SL + +Q+ RI+ Y L
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMS---------RQWKIATKGS--CHK- 164
GG F L ++ Y ++Q V G + +W
Sbjct: 64 YGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETL 123
Query: 165 --------SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA----VRYLMG-GRT--FEC 209
+FLVR S + PGD+ L + + V G E
Sbjct: 124 LQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLET 183
Query: 210 LDAVINRYRKEQIV 223
D++ + +
Sbjct: 184 FDSLTDLVEHFKKT 197
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 62.3 bits (152), Expect = 2e-12
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 57 FDWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSL------FFHINNQIQRFRIE 109
+DWF +++ + +L + G G+F+VR S G Y++ ++ + +
Sbjct: 11 YDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHVH 69
Query: 110 KKAVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 148
A YL F+ + +I+ ++ L PV+
Sbjct: 70 TNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITRLRHPVS 110
Score = 43.4 bits (103), Expect = 9e-06
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 165 SFLVRPSDNSPGDYSL------FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINR 216
+F+VR S G Y++ ++ + + A YL F+ + +I+
Sbjct: 35 AFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHY 93
Query: 217 YRKEQIVEGHTLGFPVT 233
++ L PV+
Sbjct: 94 HQHNSAGMITRLRHPVS 110
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 62.0 bits (151), Expect = 2e-12
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 53 PNTV--FDWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPGDYSL------FFHINNQI 103
PN + ++W++ +++ A +L+ G G+F+VR S +PG Y++ N I
Sbjct: 3 PNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCI 61
Query: 104 QRFRI----EKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTR 149
+ + I + Y+ F+ + +I ++ L +PV
Sbjct: 62 KHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPVCG 111
Score = 42.0 bits (99), Expect = 3e-05
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 165 SFLVRPSDNSPGDYSL------FFHINNQIQRFRI----EKKAVRYLMGGRTFECLDAVI 214
+F+VR S +PG Y++ N I+ + I + Y+ F+ + +I
Sbjct: 33 AFMVRDSR-TPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLI 91
Query: 215 NRYRKEQIVEGHTLGFPVTR 234
++ L +PV
Sbjct: 92 QYHQYNGGGLVTRLRYPVCG 111
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 61.5 bits (150), Expect = 3e-12
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 58 DWFHPECTKNDAVDMLVKAG--PGSFLVRPSDNSPGDYSL-FFHINN----QIQRFRIEK 110
WF ++ DA L+ G GSFL+R S+++ G +SL + ++ ++I
Sbjct: 5 PWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 64
Query: 111 KAVR--YLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVT 148
Y+ TF L ++ Y L P
Sbjct: 65 LDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ 104
Score = 44.2 bits (105), Expect = 4e-06
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 165 SFLVRPSDNSPGDYSL-FFHINN----QIQRFRIEKKAVR--YLMGGRTFECLDAVINRY 217
SFL+R S+++ G +SL + ++ ++I Y+ TF L ++ Y
Sbjct: 29 SFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY 88
Query: 218 RKEQIVEGHTLGFPVT 233
L P
Sbjct: 89 TNASDGLCTRLSRPCQ 104
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 62.2 bits (151), Expect = 3e-12
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 58 DWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI---------------NNQ 102
W+ P +++ A+ +L PG+FL+R S + G Y L +
Sbjct: 21 FWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQL 80
Query: 103 IQRFRIEKKAVRYLMGG----RTFECLDAVINRYRKEQIVEGHTLGFP 146
++ F IE + G F L A+++++ I L P
Sbjct: 81 VRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIP 128
Score = 38.0 bits (88), Expect = 9e-04
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 165 SFLVRPSDNSPGDYSLFFHI---------------NNQIQRFRIEKKAVRYLMGG----R 205
+FL+R S + G Y L + ++ F IE + G
Sbjct: 43 AFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEP 102
Query: 206 TFECLDAVINRYRKEQIVEGHTLGFP 231
F L A+++++ I L P
Sbjct: 103 YFGSLSALVSQHSISPISLPCCLRIP 128
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 65.7 bits (161), Expect = 4e-12
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 43 LVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQ 102
++ ++ + + W+H + + ++LV G FLVR S +Y L +
Sbjct: 2 MIPEVQKPLHE---QLWYHGAIPRAEVAELLVH--SGDFLVRESQ-GKQEYVLSVLWDGL 55
Query: 103 IQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQ--WKI 156
+ F I+ Y + G F + +I+ Q G + R + W +
Sbjct: 56 PRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKDKWVL 111
Score = 44.6 bits (106), Expect = 3e-05
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 224
FLVR S +Y L + + F I+ Y + G F + +I+ Q
Sbjct: 34 DFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPL 92
Query: 225 GHTLGFPVTR 234
G + R
Sbjct: 93 TKKSGVVLHR 102
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 65.7 bits (160), Expect = 6e-12
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 59 WFHPECTKNDAVDMLVKAG-PGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-L 116
WFH + + DA +L G GSFL RPS + GD+SL + +Q+ RI+ Y L
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 117 MGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMS---------RQWKIA--TKGSCHK- 164
GG F L ++ Y ++Q V G + +W + G
Sbjct: 64 YGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETL 123
Query: 165 --------SFLVRPSDNSPGDYSL 180
+FLVR S + PGD+ L
Sbjct: 124 LQAKGEPWTFLVRESLSQPGDFVL 147
Score = 45.3 bits (107), Expect = 2e-05
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 163 HKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQ 221
H SFL RPS + GD+SL + +Q+ RI+ Y L GG F L ++ Y ++Q
Sbjct: 24 HGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQ 83
Query: 222 IVEGHTLGFPVT 233
V G +
Sbjct: 84 GVLQDRDGTIIH 95
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 64.2 bits (155), Expect = 1e-11
Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 19/152 (12%)
Query: 50 TIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIE 109
D W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 4 NFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIIN 63
Query: 110 KK------------------AVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMS 151
R +G + F+ L A++ + K ++ TL PV+R
Sbjct: 64 SSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLE-FYKIHYLDTTTLIEPVSRSR 122
Query: 152 RQWKIATKGSCHKSFLVRPSDNSPGDYSLFFH 183
+ + + + N + L F
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFK 154
Score = 53.4 bits (127), Expect = 3e-08
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWF 60
D ++L F+KGDI + ++ + W W G++GMI VE P +
Sbjct: 145 GNDEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVEK----YRPASASVSA 199
Query: 61 HPECTKNDAVDMLVKAGPGSFLVRPSDNSP 90
+ + + +PS N+P
Sbjct: 200 LIGGNQEGSHPQPLGGPEPGPYAQPSVNTP 229
Score = 45.3 bits (106), Expect = 1e-05
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK------------------AVRYLMGGRT 206
FLVR S SPGDY L N+++ + I R +G +
Sbjct: 34 VFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQE 93
Query: 207 FECLDAVINRYRKEQIVEGHTLGFPVTRTEDWFSLAGVTPIGEWGSLRLKFRYSHD 262
F+ L A++ + K ++ TL PV+R+ + E+ F + +
Sbjct: 94 FDSLPALLE-FYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDE 148
Score = 37.3 bits (85), Expect = 0.005
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
D L + G++ V G W G++G V LD+
Sbjct: 252 DKTALALEVGELVKVTKINVSGQ-W-EGECNGKRGHFPFTHVRLLDQQ 297
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 62.2 bits (150), Expect = 2e-11
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 52 DPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK 111
D W+ ++ +AV +L G FLVR S SPGDY L N+++ + I
Sbjct: 8 DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSS 67
Query: 112 AVRY-LMGGRTFECLDAVINRYR 133
R + +R R
Sbjct: 68 GPRPPVPPSPAQPPPGVSPSRLR 90
Score = 60.3 bits (145), Expect = 1e-10
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWF 60
D ++L F+KGDI + ++ + W W G++GMI VE P +
Sbjct: 147 GNDEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVEK----YRPASASVSA 201
Query: 61 HPECTKNDAVDMLVKAGPGSFLVRPSDNS 89
+ + + +PS N+
Sbjct: 202 LIGGNQEGSHPQPLGGPEPGPYAQPSVNT 230
Score = 41.8 bits (97), Expect = 2e-04
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 159 KGSCHKSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRY 217
+G H FLVR S SPGDY L N+++ + I R + +R
Sbjct: 30 QGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRL 89
Query: 218 R 218
R
Sbjct: 90 R 90
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 59.9 bits (145), Expect = 3e-11
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 33 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGP-GSFLVRPSDNSPG 91
+G G + E + W+ C + A + L ++ GSFL+R S
Sbjct: 3 SGSSGPFNSTFADQEAELLG----KPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDS 58
Query: 92 D--YSLFFHINNQIQ--RFRIEKKAVRYLMG-----GRTFECLDAVINRYRKEQIV 138
Y+L N ++ R + +Y +G F + ++N ++ +V
Sbjct: 59 KQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLV 114
Score = 40.2 bits (94), Expect = 2e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 165 SFLVRPSDNSPGD--YSLFFHINNQIQ--RFRIEKKAVRYLMG-----GRTFECLDAVIN 215
SFL+R S Y+L N ++ R + +Y +G F + ++N
Sbjct: 47 SFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVN 106
Query: 216 RYRKEQIV 223
++ +V
Sbjct: 107 SHQHNPLV 114
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 55.4 bits (134), Expect = 2e-10
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 2 PDTDELTFQKGDIFFV-HNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
+ L+F +GD+ + E DGWL+ T +G + L
Sbjct: 20 NNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG 68
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 54.6 bits (132), Expect = 4e-10
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+ DEL ++GD V + DGW + RT + G
Sbjct: 20 NEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTF 56
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 52.2 bits (126), Expect = 3e-09
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+EL QKG+ V + DGWL + TG G+
Sbjct: 20 RPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIF 56
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 53.7 bits (129), Expect = 3e-09
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 51 IDPNTVFDWFHPECTKNDAVDMLVK-AGPGSFLVRPSDNSPGDYSL---FFHINNQIQRF 106
+D ++ +A +ML K G+ ++RP + +YS+ +I+ +
Sbjct: 9 VDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSD-SRNYSITIRQEIDIPRIKHY 67
Query: 107 RIEK---KAVRYLMGGRTFECLDAVINRYRKE 135
++ L T L +VI+ + KE
Sbjct: 68 KVMSVGQNYTIELEKPVTLPNLFSVIDYFVKE 99
Score = 37.5 bits (87), Expect = 0.001
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 163 HKSFLVRPSDNSPGDYSL---FFHINNQIQRFRIEK---KAVRYLMGGRTFECLDAVINR 216
+ ++RP + +YS+ +I+ +++ L T L +VI+
Sbjct: 37 LGNMILRPGSD-SRNYSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDY 95
Query: 217 YRKE 220
+ KE
Sbjct: 96 FVKE 99
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 51.3 bits (123), Expect = 1e-08
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
T++L+F+KG+ F + N W + TG+ G I + V D +W+
Sbjct: 40 TTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVP----ADSIQAEEWYFG 95
Query: 63 ECTKNDAVDML 73
+ + DA
Sbjct: 96 KMGRKDAESGP 106
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth
regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2
PDB: 1wq1_G*
Length = 334
Score = 54.4 bits (130), Expect = 2e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 262 DLVMPSEEYSPLQQLLLESDLAVVKALADVCHGDRNRLASSLLRIF 307
+ +MP EEYS ++L+L+ +L VV AL+ VC DR LAS LLRIF
Sbjct: 2 EKIMPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIF 47
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 52.6 bits (126), Expect = 2e-08
Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 37/191 (19%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSL--------FFHIN----NQIQRF 106
++ P A D L G F++R S ++ F H++ +
Sbjct: 10 YYFP-FNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPL 68
Query: 107 RIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSF 166
+ K ++ G+ + LD +I Y + +I + L + ++K TK K
Sbjct: 69 ALGKV---LVVEGQRYHDLDQIIVEYLQNKIRLLNEL-----TSNEKFKAGTKKEVVKFI 120
Query: 167 L-------------VRPSDNSPGDYSLFFHINNQ--IQRFRIEKKAVRYLMGGRTFECLD 211
+ +PG + L F +N + + + ++ + + + +
Sbjct: 121 EDYSKVNPKKSVYYFSLNYENPGWFYLIFKLNAESKLYIWNVKLTHTGFFLVNYNYPTVI 180
Query: 212 AVINRYRKEQI 222
+ N K +
Sbjct: 181 QLCN-GFKTLL 190
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 49.7 bits (119), Expect = 2e-08
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD--ETIDPNTVFDWFH 61
D+L+F KG+ F + N W + TGE G I + +D + D + H
Sbjct: 20 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKDDDDKHHHHH 78
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 48.1 bits (115), Expect = 7e-08
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+ EL +KGDI F+ + GW ++G +
Sbjct: 15 GSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWV 52
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 47.7 bits (114), Expect = 1e-07
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D+L+F KG+ F + N W + TGE G I
Sbjct: 28 TEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYI 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-07
Identities = 58/469 (12%), Positives = 111/469 (23%), Gaps = 186/469 (39%)
Query: 33 TGEQGMIFRDLVEDLDETI----DPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDN 88
TGE ++D++ ++ D V D +K + +D ++ + D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSK---------DA 60
Query: 89 SPGDYSLFFHI----NNQIQRFRIEKKAVRY--LMGGRTFECLDAVINR----------Y 132
G LF+ + +Q+F E + Y LM E + Y
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 133 RKEQIVEGHTLGFPVTRMSRQWKIATK---------------GSCHKSFLV----RPSD- 172
Q+ + V+R+ K+ K+++
Sbjct: 121 NDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 173 ----------------NSPGDY-----SLFFHIN-----------NQIQRFRIEKKAVRY 200
NSP L + I+ N R + +R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 201 LMGGRTFE-CL-------------------------------DAVINRYRKEQIVEGHTL 228
L+ + +E CL D + ++ H++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 229 GFPVTRTEDWFSLAGVTPIGEWGSLRLKFRYSHDLVMPSE--EYSPLQQLLLESDLAVVK 286
+ L + DL P E +P +
Sbjct: 297 TLTPDEVKSLLLKY----------LDCRP---QDL--PREVLTTNPR----------RLS 331
Query: 287 ALADVCHGDRNRL-------ASSLLRIFSLDVKETLP---------CSIFYAILFQTVTE 330
+A+ L I + P S+F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------P 382
Query: 331 VDAKI-----------KPVQHAEKIYATLRECREQVGLKK--IKGTYSI 366
A I + + + + ++K + T SI
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISI 428
Score = 49.1 bits (116), Expect = 2e-06
Identities = 50/351 (14%), Positives = 101/351 (28%), Gaps = 99/351 (28%)
Query: 43 LVEDLDETIDPNTVFDWFHPEC-----TKN----DAVD-------MLVKAGPG------- 79
LV L + ++ F+ C T+ D + L
Sbjct: 248 LV--LLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 80 ----SFL-VRPSD-------NSPGDYSLF---FHIN-NQIQRFR-IEKKAVRYLMGGRTF 122
+L RP D +P S+ ++ + + ++ +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSL 363
Query: 123 ECLDAVINR--YRKEQIVEGHTLGFPVTRMSRQW---------KIATKGSCHKSFLV--R 169
L+ R + + + P +S W + K HK LV +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQ 420
Query: 170 PSDNSPGDYSLFFHINNQI-QRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTL 228
P +++ S++ + ++ + + + +++ Y + + L
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRS----------------IVDHYNIPKTFDSDDL 464
Query: 229 GFPVTRTED--WFS-----LAGVTPIGEWGSLR---LKFRY-----SHDLVMPSEEYSPL 273
P D ++S L + R L FR+ HD +
Sbjct: 465 IPP---YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSI 520
Query: 274 QQLLLESDLAVVKALADVCHGDRNRLASSLLRIFSLDVKETLPCSIFYAIL 324
L L K RL +++L F ++E L CS + +L
Sbjct: 521 LNTLQ--QLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLL 568
Score = 35.6 bits (81), Expect = 0.032
Identities = 26/213 (12%), Positives = 63/213 (29%), Gaps = 79/213 (37%)
Query: 39 IFRDLVEDLDETIDPNTVFD--WFHPECTKNDAVDMLVKAGPGSFLVR-PSDNSPGDYSL 95
+F I P + WF + K+D + ++ K S + + P +++ S+
Sbjct: 380 VFPP-----SAHI-PTILLSLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 96 FFHINNQI-QRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQW 154
+ + ++ + + + +++ Y
Sbjct: 432 YLELKVKLENEYALHRS----------------IVDHYNI-------------------- 455
Query: 155 KIATKGSCHKSFLVRPSDNSPGDYSLFF---HINN--QIQR---FR--------IEKKAV 198
K + D Y H+ N +R FR +E+K +
Sbjct: 456 ---PKTFDSDDLIPPYLDQ----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-I 507
Query: 199 RYLMGGRTFECLDAVIN-----RYRKEQIVEGH 226
R+ + +++N ++ K I +
Sbjct: 508 RH--DSTAWNASGSILNTLQQLKFYKPYICDND 538
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 47.3 bits (113), Expect = 1e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
DEL + D V + D W RTG +G+
Sbjct: 21 DELELEVDDPLLVELQAEDYWYEAYNMRTGARGV 54
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 46.8 bits (112), Expect = 2e-07
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL +KGD+ ++ E GW ++G +
Sbjct: 13 GSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWV 50
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
DEL + D V + D W RTG +G+
Sbjct: 18 DELELEVDDPLLVELQAEDYWYEAYNMRTGARGV 51
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 46.1 bits (110), Expect = 3e-07
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
+EL +GDI F+ + G GWL + G++ + V + + H
Sbjct: 20 NELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE-LEHH--HHHH 73
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 45.6 bits (109), Expect = 4e-07
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+ +EL +GDI F+ + G GWL + G++
Sbjct: 14 NDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLV 50
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 47.1 bits (111), Expect = 6e-07
Identities = 14/85 (16%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 59 WFHPECTKNDAVDMLVK-AGPGSFLVRPSDNSPGDYSLFF----HINNQIQRFRIEKKAV 113
+ ++ +A +L + G+ L+RPS + S+ + + ++ ++++++
Sbjct: 23 SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82
Query: 114 RYLMGGR---TFECLDAVINRYRKE 135
+Y++ + LDAV+N +
Sbjct: 83 KYVIDVEQPFSCTSLDAVVNYFVSH 107
Score = 35.5 bits (81), Expect = 0.005
Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 159 KGSCHKSFLVRPSDNSPGDYSLFF----HINNQIQRFRIEKKAVRYLMGGR---TFECLD 211
+ + L+RPS + S+ + + ++ ++++++ +Y++ + LD
Sbjct: 39 RYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLD 98
Query: 212 AVINRYRKE 220
AV+N +
Sbjct: 99 AVVNYFVSH 107
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 49.8 bits (118), Expect = 6e-07
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 22/142 (15%)
Query: 27 WVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAG--PGSFLVR 84
A TG Q M DP ++ P ++ +A +L + G+FL+R
Sbjct: 19 SHMASMTGGQQMT--------TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMR 70
Query: 85 PSDNSPGDYSL---FFHINNQIQRFRIEKK--------AVRYLMGGRTFECLDAVINRYR 133
S + PG+YSL N + + IE+ A + ++F + A++N ++
Sbjct: 71 DS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFK 129
Query: 134 KEQIVEGHTLGFPVTRMSRQWK 155
+ E L +
Sbjct: 130 MRVLTEASLLAAYKKPIIEVVV 151
Score = 42.5 bits (99), Expect = 1e-04
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
+L F++G+ + ++ W W + G G++ + V+ E + T
Sbjct: 159 ERETDLPFEQGERLEILSKTNQDW-WEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQ 217
Query: 62 PECTKNDA 69
+
Sbjct: 218 SSIGSSGG 225
Score = 34.8 bits (79), Expect = 0.030
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
D +L +KG V ++ +G + A G+ G + + +
Sbjct: 262 DPTQLRVKKGQTVLVTQKMSNGM-YK-AELDGQIGSVPHTYLRFTAVS 307
Score = 32.5 bits (73), Expect = 0.20
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 149 RMSRQ---WKIATKGSCHKSFLVRPSDNSPGDYSL---FFHINNQIQRFRIEKK------ 196
MSR+ + +FL+R S + PG+YSL N + + IE+
Sbjct: 47 GMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDG 105
Query: 197 --AVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRTEDWF 239
A + ++F + A++N ++ + E L +
Sbjct: 106 TAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 150
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 44.9 bits (107), Expect = 8e-07
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWV-TAHRTGEQGM 38
D DE++F+ GD + DGW T RTG GM
Sbjct: 19 DEDEVSFRDGDYIVNVQPIDDGW-MYGTVQRTGRTGM 54
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 45.6 bits (108), Expect = 9e-07
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 3 DTDELTFQKGDIFFVH----NELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
+ DEL GD F+ +GW++ T+ TG G++ + + DE
Sbjct: 29 NDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC 80
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 44.1 bits (105), Expect = 1e-06
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+ L+ KG+ V +G W A QG +
Sbjct: 20 NTLSITKGEKLRVLGYNHNGE-WCEAQTKNGQGWV 53
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 44.7 bits (106), Expect = 1e-06
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
DE+T Q+ D+ V + DGWL+ R GE G
Sbjct: 30 QADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGW 64
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 44.7 bits (106), Expect = 2e-06
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+L+F KG+ F + W + TGE G I
Sbjct: 19 RWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYI 55
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
+DELTF +G + ++ GW W + T Q + VED+
Sbjct: 20 RSDELTFCRGALIHNVSKEPGGW-WKGDYGTRIQQYFPSNYVEDISG 65
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 46.3 bits (109), Expect = 2e-06
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 49 ETIDPNTVFDWFHPECTKNDAVDMLVKAGP--GSFLVRPSDNSPGDYSL---FFHINNQI 103
DP ++ P ++ +A +L + G+FL+R S + PG+YSL N +
Sbjct: 4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAV 62
Query: 104 QRFRIEKK--------AVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRMSRQWK 155
+ IE+ A + ++F + A++N ++ + E L +
Sbjct: 63 CHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVV 122
Score = 44.0 bits (103), Expect = 2e-05
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+L F++G+ + ++ W W + G G++
Sbjct: 130 ERETDLPFEQGERLEILSKTNQDW-WEARNALGTTGLV 166
Score = 29.8 bits (66), Expect = 1.0
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 146 PVTRMSRQWKIATKGSCHKSFLVRPSDNSPGDYSL---FFHINNQIQRFRIEKK------ 196
++R + +FL+R S + PG+YSL N + + IE+
Sbjct: 18 GMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDG 76
Query: 197 --AVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRTEDWF 239
A + ++F + A++N ++ + E L +
Sbjct: 77 TAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 121
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 43.4 bits (103), Expect = 3e-06
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
+LTF+KG+I V + DGW W+ G +G++ R +E E
Sbjct: 23 QVGDLTFKKGEILLVIEKKPDGW-WIAKDAKGNEGLVPRTYLEPYSE 68
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 43.5 bits (103), Expect = 3e-06
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 2 PDTDELTFQKGDIFFVHN-ELGDGWLWVTAHRTGEQGM 38
++ L+F++GD+ + E DGW + + +T +G
Sbjct: 20 DNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGW 57
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 3 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMI 39
D DE+T GD + G GW + TGE G++
Sbjct: 14 DDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLV 51
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 43.0 bits (102), Expect = 4e-06
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D +L+F +G+ + + W W R G G I
Sbjct: 20 DETQLSFLRGEKILILRQTTADW-W-WGERAGCCGYI 54
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 42.8 bits (101), Expect = 6e-06
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D F++G+ V ++ G W + TG + I
Sbjct: 30 DISPPIFRRGEKLRVISDEGGWW-KAISLSTGRESYI 65
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 43.4 bits (102), Expect = 7e-06
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
EL G +V+ ++ + + G++G++ + V+ + +
Sbjct: 38 AELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN 83
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 42.3 bits (100), Expect = 8e-06
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 2 PDTDELTFQKGDIFFVHN-ELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
+ L+F +GD+ + E DGWL+ + +G + L+E
Sbjct: 19 SNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE 67
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 42.1 bits (99), Expect = 1e-05
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
E+T +KGDI + N W V + QG + V+ LD V +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLDSGTGKELVLALYDY 61
Query: 63 ECTKNDA 69
+ + ++A
Sbjct: 62 QESGDNA 68
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 41.8 bits (99), Expect = 1e-05
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+EL G+I FV + D W V G++G++
Sbjct: 20 TKEELQVMPGNIVFVLKKGNDNWATVM--FNGQKGLV 54
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 41.5 bits (98), Expect = 2e-05
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+ ++L +KGD +F+ E W W + G++G I
Sbjct: 21 NANDLQLRKGDEYFILEESNLPW-WRARDKNGQEGYI 56
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 44.1 bits (104), Expect = 2e-05
Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEKKAVRYLM 117
F ++ + L ++ FL+R + G L ++ +IE+ + Y
Sbjct: 16 LFKN-FNVTESENYL-RSSTDDFLIRKG-SRHGYCVLVIKFASDVFVHMKIEEHSEHYTC 72
Query: 118 GGRTFECLDAVINRY-----RKEQIVEGHTLGFPVTRMSRQWKIATKGSCHKSFLVRPSD 172
+ FE +D VI+ Y R + ++ H F + + + GS + S
Sbjct: 73 SNKHFEDIDEVISVYVRPILRNLKSIKAHAKYFNSPEDAEKLLSSFDGS-KVVYAFYFSR 131
Query: 173 NSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRK 219
PG + ++ + ++ + + Y TF+ +D+ + ++
Sbjct: 132 KYPGKLTFAYNNGSILEEYIGVSDMLTY--NNSTFKDIDSFVAYRKR 176
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 41.6 bits (98), Expect = 2e-05
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 DELTFQKGDIFFVHNELGD-GWLWVTAHRTGEQGMI 39
EL F+KGD+ + + W V H +G++G++
Sbjct: 32 GELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLL 67
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 16 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVEKYHH 61
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 41.7 bits (98), Expect = 2e-05
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
++L+FQKGD V E G+ W + T ++G I
Sbjct: 40 EDLSFQKGDQMVVLEESGEWW-KARSLATRKEGYI 73
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 40.8 bits (96), Expect = 2e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 3 DTDELTFQKGDIFFVHNELGDGW---LWVTAHRTGEQGMI 39
+EL+F+ GD+F V + W L A QG +
Sbjct: 23 TDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYV 62
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 40.7 bits (96), Expect = 3e-05
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+L ++G + + + W W + G +G I
Sbjct: 17 HDLRLERGQEYIILEKNDLHW-WRARDKYGSEGYI 50
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 40.3 bits (95), Expect = 4e-05
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+L F KGD+ + D + ++ G +G+I
Sbjct: 24 AEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGII 60
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 40.4 bits (95), Expect = 4e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+DELT +GDI V + + W W + G++G
Sbjct: 19 RSDELTIHRGDIIRVFFKDNEDW-WYGSIGKGQEGYF 54
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 40.3 bits (95), Expect = 4e-05
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D+L+F+KG+ V E G+ W + T ++G I
Sbjct: 20 HPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFI 55
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 40.8 bits (96), Expect = 4e-05
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 64
D+L+FQKGD V E G+ W + T ++G I + V +D
Sbjct: 18 DDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYV----ARVDSGGGTSGGGRH- 71
Query: 65 TKNDAVDML 73
+ A M
Sbjct: 72 RRRQAERMS 80
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 40.3 bits (95), Expect = 4e-05
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
+ DEL GDI V E DGW W T R G++G
Sbjct: 21 NPDELDLSAGDILEVILEGEDGW-W-TVERNGQRGF 54
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 49
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 40.9 bits (96), Expect = 6e-05
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWV--TAHRTGEQGMI---FRDLVEDLDETIDPNTV 56
DELT G+ F+ W ++ R G G++ F +++ N V
Sbjct: 20 DELTTYVGENLFICAHHNCEW-FIAKPIGRLGGPGLVPVGFVSIIDIATGYATGNDV 75
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 40.2 bits (94), Expect = 9e-05
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
+EL F++G I V+ + + G+I ++V ++
Sbjct: 40 EELPFKEGQIIKVYGDKDADG-FYRGETCARLGLIPCNMVSEIQ 82
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 38.7 bits (91), Expect = 9e-05
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWV-TAHRTGEQGM 38
+ +ELTF + D + D W W+ + G +G+
Sbjct: 13 EDNELTFVENDKIINIEFVDDDW-WLGELEKDGSKGL 48
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 39.7 bits (93), Expect = 1e-04
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D EL ++ + + + + W W R G +G +
Sbjct: 32 DPQELALRRNEEYCLLDSSEIHW-WRVQDRNGHEGYV 67
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 38.8 bits (91), Expect = 1e-04
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+L F+KG+ + + G+ W + TG++G I
Sbjct: 18 SHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFI 54
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 39.2 bits (92), Expect = 1e-04
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+EL+ K ++ V + G W W R+G+ G +
Sbjct: 22 NELSVLKDEVLEVLED-GRQW-WKLRSRSGQAGYV 54
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 39.2 bits (92), Expect = 1e-04
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 DELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 39
DELT + GD ++ ++ W +G+ G++
Sbjct: 21 DELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLV 56
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 39.1 bits (92), Expect = 1e-04
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
E++F+KG+ + ++ + W T QG+
Sbjct: 20 TQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIF 56
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
+ ELT +G+ V + W V + G G I
Sbjct: 20 NPRELTVVQGEKLEVLDHSKRWW-LVK-NEAGRSGYI 54
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 38.8 bits (91), Expect = 2e-04
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
+ EL+ Q G++ V + GW W + EQG + +E +
Sbjct: 21 ENSELSLQAGEVVDVIEKNESGW-W-FVSTSEEQGWVPATYLEAQNSG 66
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 38.8 bits (91), Expect = 2e-04
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 3 DTDELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 39
++ +G+ + E GDGW + G +G +
Sbjct: 20 SEGTISMAEGEDLSLMEEDKGDGW-TRVRRKEGGEGYV 56
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 39.9 bits (93), Expect = 2e-04
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAH-RTGEQGMI 39
DEL G+ + W R G G++
Sbjct: 18 DELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLV 53
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 DELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 39
DELT + GD ++ ++ W +G+ G++
Sbjct: 17 DELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLV 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 59/357 (16%), Positives = 105/357 (29%), Gaps = 138/357 (38%)
Query: 34 GEQGMI---FRDL----------VEDL------------DETIDPNTVF-------DWF- 60
G QG F +L V DL T+D VF +W
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 61 HPECTKNDAVDMLVKA---GPGSFLV---------RPSDNSPGDY-----SLFFHINNQI 103
+P T + D L+ P ++ + +PG+ H +
Sbjct: 221 NPSNTPDK--DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 104 -----------QRF-RIEKKAVRYL--MGGRTFECLDAVINRYRKEQIVE---GHTLGFP 146
+ F +KA+ L +G C +A N I+E + G P
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIG---VRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 147 -----VTRMSRQW--KIATKGSCHKSFLVRPSD--------NSPGDY-------SLFFHI 184
++ ++++ K + H P+ N + SL+ +
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHL-----PAGKQVEISLVNGAKNLVVSGPPQSLY-GL 389
Query: 185 NNQIQRF---------RI---EKKAV---RYLMGGRTF------ECLDAVINRYRKEQI- 222
N +++ RI E+K R+L F D + K +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 223 VEGHTLGFPVTRTEDWFSLAGVT--------------PIGEWGSLRLKFRYSHDLVM 265
+ PV T D L ++ P+ +W + +F+ +H L
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV-KWETT-TQFKATHILDF 504
Score = 31.6 bits (71), Expect = 0.51
Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 54/151 (35%)
Query: 35 EQGM---------IFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVK-AGPGSFLVR 84
EQGM +D+ D + + + N+ V++ + G +R
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDT--YGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 85 ----------PSDNSPGDYSLFFHINNQIQR--FRIEKK-------------AVRYLMGG 119
D +F IN FR EK +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA-- 1743
Query: 120 RTFECLDAVINRYRKEQIVE------GHTLG 144
FE L + + ++ GH+LG
Sbjct: 1744 --FEDL-------KSKGLIPADATFAGHSLG 1765
Score = 31.6 bits (71), Expect = 0.54
Identities = 51/293 (17%), Positives = 82/293 (27%), Gaps = 122/293 (41%)
Query: 117 MGG---RTFECLDAVINR---YRKEQIVEGHTLGFPVTRMSRQ--WKIATKGSCHKSFLV 168
MG +T + V NR + K+ T GF + + + K +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKD------TYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 169 R----------PSDNSPGDYSLFFHINNQIQR--FRIEKK-------------AVRYLMG 203
R D +F IN FR EK +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA- 1743
Query: 204 GRTFECLDAVINRYRKEQIVE------GHTLGFPVTRTEDWFS----LAGVTPIGEWGSL 253
FE L + + ++ GH+LG E ++ LA V I +
Sbjct: 1744 ---FEDL-------KSKGLIPADATFAGHSLG------E--YAALASLADVMSIES--LV 1783
Query: 254 RL-KFR--YSHDLVMPSEE-----YS-----PLQ---QLLLESDLAVVKALAD------- 290
+ +R V P +E Y P + E+ VV+ +
Sbjct: 1784 EVVFYRGMTMQVAV-PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 291 -----------VCHGDRNRL--ASSLL------RI--------FSLD-VKETL 315
V GD L +++L +I SL+ V+ L
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 29.6 bits (66), Expect = 2.1
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 66/176 (37%)
Query: 226 HTLGFPVTRTEDWFSLAGVTPIGEWGSLRLKFRYSHDLVMPSEEY-------SPLQQLLL 278
H L P T +F + +L+ +++ L P+E + +P + L+
Sbjct: 18 HVLLVP---TASFFIAS-----------QLQEQFNKILPEPTEGFAADDEPTTPAE--LV 61
Query: 279 ESDLA-VVKALADVCHGDRNRLASSLLRIF---------------SLDVKETLP------ 316
L V + G +++ + L F L +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 317 -CSIFYA---------------ILFQTVTEVDAKIKPV---QHAEKIYATLRECRE 353
+ LF+ V E +A++ + Q Y E R+
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEELRD 175
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 38.6 bits (90), Expect = 2e-04
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+++L+ G + + + GW W
Sbjct: 20 GSEQLSLAPGQLILILKKNTSGW-W 43
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 38.1 bits (89), Expect = 2e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
DE+ F+KG V + +GW W G++G
Sbjct: 21 SKDEIGFEKGVTVEVIRKNLEGW-W-YIRYLGKEGWA 55
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 38.6 bits (90), Expect = 3e-04
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
D L + GDI V +G W
Sbjct: 31 DKTALALEVGDIVKVTRMNINGQ-W 54
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 38.1 bits (89), Expect = 3e-04
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D EL + + +++ + W W + G +G
Sbjct: 33 DPQELALRCDEEYYLLDSSEIHW-WRVQDKNGHEGYA 68
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DELTF++GD VH + GW W
Sbjct: 16 TGDELTFKEGDTIIVHQKDPAGW-W 39
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DEL+F KGD+ V GW W
Sbjct: 19 NEDELSFSKGDVIHVTRVEEGGW-W 42
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 37.2 bits (87), Expect = 4e-04
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DEL+F KGD+ V GW W
Sbjct: 17 NEDELSFSKGDVIHVTRVEEGGW-W 40
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 37.7 bits (88), Expect = 4e-04
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 3 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMI 39
DELT ++ ++ V + + W ++ G+ G +
Sbjct: 26 QPDELTIEEHEVLEVIEDGDMEDW-VKARNKVGQVGYV 62
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
+ DEL+ KGDI +V GW W G G + V ++ +
Sbjct: 23 NEDELSVCKGDIIYVTRVEEGGW-WEGTLN-GRTGWFPSNYVREIKSS 68
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 37.8 bits (88), Expect = 4e-04
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLW---VTAHRTGEQGMI 39
D + FQ+G V +GW W + +G +
Sbjct: 21 GDEETAGFQEGVSMEVLERNPNGW-WYCQILDGVKPFKGWV 60
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 37.7 bits (88), Expect = 4e-04
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 47
ELTF GDI V E+ + + G++G++ + +E++
Sbjct: 29 AELTFCTGDIITVFGEIDEDGFYYGELN-GQKGLVPSNFLEEV 70
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 38.2 bits (89), Expect = 4e-04
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTV 56
+ DEL + GDI V E+ +GW W G+ GM + +++L D +
Sbjct: 31 NDDELELKVGDIIEVVGEVEEGW-WEGVLN-GKTGMFPSNFIKELSGESDELGI 82
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 37.3 bits (87), Expect = 4e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
E+T +KGDI + N W V + QG
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGF 35
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 37.7 bits (88), Expect = 4e-04
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNT 55
DEL +KGDI +H + +GW W + G++G VE+L
Sbjct: 20 QDDELNLEKGDIVIIHEKKEEGW-WFGSLN-GKKGHFPAAYVEELPSNAGNTA 70
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 37.8 bits (88), Expect = 4e-04
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 50
E+T +KGDI + N W W QG + V+ LD
Sbjct: 15 SPREVTMKKGDILTLLNSTNKDW-W-KVEVNDRQGFVPAAYVKKLDPA 60
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 37.2 bits (87), Expect = 5e-04
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DEL + GDI V E+ +GW W
Sbjct: 20 NDDELELKVGDIIEVVGEVEEGW-W 43
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 39.6 bits (92), Expect = 6e-04
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 62
E+ GD+ V + GW + ++G I +E LD + +
Sbjct: 24 SGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIPASFLEPLDSPDETEDPEPNYAG 81
Query: 63 ECTK 66
E
Sbjct: 82 EPYV 85
Score = 36.9 bits (85), Expect = 0.004
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDP 53
+ DE++ +G+ V ++L DGW + G ++ + +
Sbjct: 94 EGDEVSLLEGEAVEVIHKLLDGWWVIRKD--DVTGYFPSMYLQKSGQDVSQ 142
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 37.7 bits (87), Expect = 6e-04
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 15/52 (28%)
Query: 3 DTDELTFQKGDIFFVHNEL---------------GDGWLWVTAHRTGEQGMI 39
++L GD+ V GW+ RT ++G
Sbjct: 24 RPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 40.6 bits (94), Expect = 6e-04
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID 52
DE+ + GDI V DG+ + G G+ V + ET+
Sbjct: 457 DEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK 504
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 36.9 bits (86), Expect = 6e-04
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
D L + GDI V +G W
Sbjct: 16 DKTALALEVGDIVKVTRMNINGQ-W 39
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 36.8 bits (86), Expect = 6e-04
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
ELT +KGDI + N W W G QG + ++ LD
Sbjct: 19 SPRELTVKKGDILTLLNSTNKDW-W-KIEVNGRQGFVPAAYLKKLD 62
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 36.8 bits (86), Expect = 6e-04
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DEL + GDI ++ E+ +GW W
Sbjct: 20 NEDELELKVGDIIDINEEVEEGW-W 43
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 38.6 bits (89), Expect = 6e-04
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 41 RDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGP------GSFLVRPSDNSPGDY- 93
ED ++ PN F + + P G + +R S G
Sbjct: 4 GSSGEDYEKVPLPN---SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVL 60
Query: 94 SLFFHINNQIQRFRI-EKKAVRYLMGGRTFECLDAVINRYRKEQIVEGH--TLGFPVTRM 150
++ +N+++ +RI EK + YL G F + +++ Y + L P
Sbjct: 61 VVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYT 120
Query: 151 S 151
S
Sbjct: 121 S 121
Score = 33.6 bits (76), Expect = 0.032
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 162 CHKSFLVRPSDNSPGDY-SLFFHINNQIQRFRI-EKKAVRYLMGGRTFECLDAVINRYRK 219
+ +R S G ++ +N+++ +RI EK + YL G F + +++ Y
Sbjct: 43 QDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHT 102
Query: 220 EQIVEGH--TLGFPVTRTE 236
+ L P T
Sbjct: 103 HVLPSHQSLLLRHPYGYTS 121
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 37.4 bits (87), Expect = 6e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
E+T +KGDI + N W W QG +
Sbjct: 32 REVTMKKGDILTLLNSTNKDW-W-KVEVNDRQGFV 64
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 40.3 bits (93), Expect = 7e-04
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 59 WFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRI 108
+ + + D L PG+F++R S+ +PG + + + R +
Sbjct: 353 IIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKH 402
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 37.4 bits (87), Expect = 7e-04
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DEL+ KG V + DGW W
Sbjct: 30 REDELSLIKGTKVIVMEKCSDGW-W 53
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 37.1 bits (86), Expect = 7e-04
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
E++F G V + GW +V +G
Sbjct: 21 QDSEISFPAGVEVQVLEKQESGWWYVR--FGELEGWA 55
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 36.9 bits (86), Expect = 9e-04
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DEL+FQ+G I +V + DGW +
Sbjct: 30 KEDELSFQEGAIIYVIKKNDDGW-Y 53
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 36.4 bits (85), Expect = 9e-04
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 5 DELTFQKGDIFFVHNELGDGW 25
EL QKGDI +++ ++ W
Sbjct: 22 KELPLQKGDIVYIYKQIDQNW 42
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DEL + GDI ++ E+ +GW W
Sbjct: 14 NEDELELKVGDIIDINEEVEEGW-W 37
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 36.6 bits (85), Expect = 0.001
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL+F++GD+ +H W + G +G+I
Sbjct: 23 TAQELSFRRGDVLRLHERASSDWWRGEHN--GMRGLI 57
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
D L + G++ V G W G++G V LD+
Sbjct: 21 DKTALALEVGELVKVTKINVSGQ-WEGECN-GKRGHFPFTHVRLLDQ 65
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DTDEL+F DI + E GW W
Sbjct: 18 DTDELSFNANDIIDIIKEDPSGW-W 41
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 36.6 bits (85), Expect = 0.001
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
L + GD+ V+ + D + G +G++
Sbjct: 29 GRLALRAGDVVMVYGPMDDQG-FYYGELGGHRGLV 62
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 36.5 bits (85), Expect = 0.001
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 2 PDTDELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 39
P +ELT +G+I V N +G GWL ++ GEQG++
Sbjct: 22 PGNNELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLV 59
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
E+T +KGDI + N W V + QG +
Sbjct: 18 SPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFV 52
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 36.2 bits (84), Expect = 0.001
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DTD L +KGDI + ++ G W
Sbjct: 24 DTDSLKLKKGDIIDIISKPPMGT-W 47
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 40
DELTF K I + GW W + G++ + F
Sbjct: 19 REDELTFIKSAIIQNVEKQEGGW-WRGDYG-GKKQLWF 54
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAH-RTG 34
DEL F++GDI ++ + W T+ RTG
Sbjct: 20 TPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 52
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI---FRDLVEDLDETIDPN 54
+ EL F++GDI + N++ + W + GE G + +++ L+ +
Sbjct: 16 NQGELGFKEGDIITLTNQIDENW-YEGMIH-GESGFFPINYVEVIVPLEHHHHHH 68
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 5 DELTFQKGDIFFVHNELGDGWLW--------VTAHRTGEQGMI 39
++L+F+ GD V + +GW W T QG I
Sbjct: 22 EDLSFRAGDKLQVLDTSHEGW-WLARHLEKKGTGLGQQLQGYI 63
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL+F+KG ++ D W W G G+I
Sbjct: 22 TARELSFKKGASLLLYQRASDDW-W-EGRHNGIDGLI 56
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 36.0 bits (84), Expect = 0.001
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 3 DTDELTFQKGDIFFVHNELGDGW 25
+ +L F KGD+ + +L + W
Sbjct: 20 NPGDLKFNKGDVILLRRQLDENW 42
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.2 bits (84), Expect = 0.001
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
EL F+ GD+ V + W W E+G
Sbjct: 23 ANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGW 56
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGM 38
+ DEL+F+ GD E GW +G+ G+
Sbjct: 16 EQDELSFKAGDELTKLGEEDEQGW-CRGRLDSGQLGL 51
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 35.7 bits (83), Expect = 0.002
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL +K + ++ ++ W W + + G +
Sbjct: 22 QELDIKKNERLWLLDD-SKSW-WRVRNSMNKTGFV 54
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DELTF +G++ V E W W
Sbjct: 23 NDDELTFIEGEVIIVTGEEDQEW-W 46
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
E+T +KGDI + N W V + QG +
Sbjct: 12 GGREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFV 46
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DELTF K I + GW W
Sbjct: 16 REDELTFTKSAIIQNVEKQDGGW-W 39
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DELT G+I + GW W
Sbjct: 14 HDDELTISVGEIITNIRKEDGGW-W 37
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 35.8 bits (83), Expect = 0.002
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DE++F DI + DGW W
Sbjct: 30 GDDEISFDPDDIITNIEMIDDGW-W 53
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 34.9 bits (81), Expect = 0.002
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
++ EL+ K D+ + ++ W W + +G+ G +
Sbjct: 14 NSSELSVMKDDVLEILDD-RRQW-WKVRNASGDSGFV 48
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
+ EL F++GDI + N++ + W + G G
Sbjct: 20 NEGELGFKEGDIITLTNQIDENW-YEGMLH-GHSGF 53
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 35.9 bits (83), Expect = 0.002
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 40
EL+F+KG+ + ++ + W TG QG IF
Sbjct: 30 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQG-IF 66
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 35.4 bits (82), Expect = 0.002
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
D DEL F+K DI + ++ + W
Sbjct: 20 DDDELGFRKNDIITIISQKDEHC-W 43
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 35.6 bits (82), Expect = 0.003
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
D L + GD+ V + DG W
Sbjct: 32 DPTALNVRAGDVITVLEQHPDGR-W 55
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 35.3 bits (82), Expect = 0.003
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
+ ++L + GDI + + + W G
Sbjct: 20 ENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGF 53
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 35.3 bits (82), Expect = 0.003
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 3 DTDELTFQKGDIFFVHNELGDGW 25
+ EL F++GD+ + N++ + W
Sbjct: 26 NDGELGFREGDLITLTNQIDENW 48
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.9 bits (81), Expect = 0.003
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 DTDELTFQKGDIFFVHNELGDGW 25
ELT QKGDI ++H E+ W
Sbjct: 14 SPKELTLQKGDIVYIHKEVDKNW 36
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
D E++F++ +I V +++ W W GE G+I
Sbjct: 19 DDAYEISFEQNEILQV-SDIEGRW-WKARRANGETGII 54
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 38.3 bits (89), Expect = 0.003
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 60 FHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG 119
FH ++ A +L+ A GS+L+R S PG Y+L +Q + FR+ ++ G
Sbjct: 54 FHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFV-GE 111
Query: 120 RTFECLDAVI 129
+ FE + ++
Sbjct: 112 KRFESIHDLV 121
Score = 31.8 bits (72), Expect = 0.39
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 165 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVI 214
S+L+R S PG Y+L +Q + FR+ ++ G + FE + ++
Sbjct: 73 SYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFV-GEKRFESIHDLV 121
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 34.9 bits (81), Expect = 0.003
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
E++F+KG+ + ++ + W T QG+
Sbjct: 21 VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGI 54
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS,
GAP, signal transduction, cancer, growth regulation, GTP
hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Length = 333
Score = 37.8 bits (87), Expect = 0.003
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 267 SEEYSPLQQLLL----ESDLAVVKALADVC-HGDRNRLASSLLRIF 307
++ + L +L+ + +L + ALA+V + LA L+ +F
Sbjct: 5 ADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLF 50
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 36.2 bits (83), Expect = 0.004
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 3 DTDELTFQKGDIFFV-----HNELGDGWLW 27
DTDEL + GD+ V E +GWL
Sbjct: 57 DTDELQLKAGDVVLVIPFQNPEEQDEGWLM 86
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 34.5 bits (80), Expect = 0.004
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 38
DELT + G+I +L + W+ G +GM
Sbjct: 14 HDDELTIRVGEIIRNVKKLQEEG-WLEGELNGRRGM 48
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DE++F DI + DGW W
Sbjct: 22 GDDEISFDPDDIITNIEMIDDGW-W 45
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 34.5 bits (80), Expect = 0.004
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL +K + ++ ++ W W + G +
Sbjct: 19 QELDIKKNERLWLLDD-SKTW-WRVRNAANRTGYV 51
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 35.2 bits (81), Expect = 0.004
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL +K + ++ ++ W W + G +
Sbjct: 44 QDQELDIKKNERLWLLDD-SKTW-WRVRNAANRTGYV 78
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 34.2 bits (79), Expect = 0.005
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW-------VTAHRTGEQGMI 39
E+T +KGDI + N W W V QG +
Sbjct: 14 SPREVTMKKGDILTLLNSTNKDW-WKVEVKITVNGKTYERQGFV 56
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 34.6 bits (80), Expect = 0.005
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAH-RTG 34
EL F+ GD+ F+ + + WL T TG
Sbjct: 31 SKLELNFKAGDVIFLLSRINKDWLEGTVRGATG 63
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
DEL F++GDI ++ + W W
Sbjct: 16 TPDELYFEEGDIIYITDMSDTNW-W 39
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 34.1 bits (79), Expect = 0.005
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
++ EL F++GD+ + N+ W W
Sbjct: 15 ESGELAFKRGDVITLINKDDPNW-W 38
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 34.8 bits (80), Expect = 0.006
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 5 DELTFQKGDIFFVHNE----LGDGWLWVTAHRTGEQGMI 39
+E++F+ GD+ + + GW + + G+I
Sbjct: 32 EEISFRAGDMLNLALKEQQPKVRGW-LLASLDGQTTGLI 69
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
EL+F+KG +++ + W W G G++
Sbjct: 19 SARELSFKKGASLLLYHRASEDW-W-EGRHNGIDGLV 53
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 5 DELTFQKGDIFFVHNELGDGWL 26
++L FQ+GDI V +++ + WL
Sbjct: 20 EDLEFQEGDIILVLSKVNEEWL 41
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 33.7 bits (78), Expect = 0.007
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 3 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGM 38
DE++ GDI V G GW + G +G+
Sbjct: 13 GDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGL 47
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 34.3 bits (79), Expect = 0.007
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDP 53
DT L F++ DI + + + ++ G++G D VE L + P
Sbjct: 23 DTSLLPFKRNDIITITFKDQENKWFMGQLN-GKEGSFPVDHVEILLSDVPP 72
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 34.7 bits (80), Expect = 0.008
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNT 55
+ DEL+F KG + V N+ W W G G+ + V+ ++ P++
Sbjct: 47 NEDELSFSKGQLINVMNKDDPDW-W-QGEINGVTGLFPSNYVKMTTDSSGPSS 97
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 34.3 bits (79), Expect = 0.008
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ +ELTF+ G+I V ++ W W
Sbjct: 30 EDNELTFKHGEIIIVLDDSDANW-W 53
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 33.5 bits (77), Expect = 0.009
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 5 DELTFQKGDIFFVHNELGDGWLW 27
E+T +KGDI + N W W
Sbjct: 36 REVTMKKGDILTLLNSTNKDW-W 57
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 33.8 bits (78), Expect = 0.010
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 5 DELTFQKGDIFFVHN--ELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPN 54
+EL F+KG+ V E W W + G+ G++ ++ V L + +
Sbjct: 21 EELNFEKGETMEVIEKPENDPEW-WKCKNARGQVGLVPKNYVVVLSDGPALH 71
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 33.9 bits (78), Expect = 0.010
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 3 DTDELTFQKGDIFFVHN--ELGDGWLWVTAHRTGEQGM 38
++ EL+ ++ V + + W R ++G
Sbjct: 30 NSTELSLLADEVITVFSVVGMDSDW-L-MGERGNQKGK 65
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 33.4 bits (77), Expect = 0.010
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
+ +LTF +G+ V + G+ W T G+ + V+ D
Sbjct: 21 EPGDLTFTEGEEILVTQKDGE---WWTGSIGDRSGIFPSNYVKPKD 63
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 33.4 bits (77), Expect = 0.011
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 5 DELTFQKGDIFFVHNELGDGW 25
D+L F+K V + W
Sbjct: 22 DDLNFEKDQEIIVTSVEDAEW 42
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 34.0 bits (78), Expect = 0.013
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 5 DELTFQKGDIFFVHNELGD--GWLWVTAHRTGEQGMI 39
+EL F+KG+ V + + W W + G+ G++
Sbjct: 32 EELNFEKGETMEVIEKPENDPEW-WKCKNARGQVGLV 67
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 33.1 bits (76), Expect = 0.013
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 39
++ EL+ ++ D+ V ++ W W G++G +
Sbjct: 21 NSSELSVKQRDVLEVLDDSRK-W-WKVRDPAGQEGYV 55
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 34.7 bits (79), Expect = 0.016
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 3 DTDELTFQKGDIFFVHNELGD-GWLW 27
D EL+ ++GDI + N+ G GW W
Sbjct: 18 DRSELSLKEGDIIKILNKKGQQGW-W 42
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 32.5 bits (75), Expect = 0.016
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 5 DELTFQKGDIFFVHNELGDGW 25
EL F+ GD+ F+ + + W
Sbjct: 19 LELNFKAGDVIFLLSRINKDW 39
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 33.6 bits (77), Expect = 0.017
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNELG--DGWLW 27
+ DE++F GDI V + GW
Sbjct: 18 NHDEMSFNSGDIIQVDEKTVGEPGW-L 43
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 32.5 bits (75), Expect = 0.018
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ DEL F+ G++ V + W W
Sbjct: 14 EEDELGFRSGEVVEVLDSSNPSW-W 37
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 35.1 bits (79), Expect = 0.019
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 2 PDTDELTFQKGDIFFV-----HNELGDGWLW 27
DTDEL + GD+ V E +GWL
Sbjct: 154 TDTDELQLKAGDVVLVIPFQNPEEQDEGWLM 184
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 32.6 bits (75), Expect = 0.019
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ +ELTF+ G++ V ++ W W
Sbjct: 18 EDNELTFKHGELITVLDDSDANW-W 41
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 33.1 bits (75), Expect = 0.020
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 15/51 (29%)
Query: 3 DTDELTFQKGDIFFVH---------------NELGDGWLWVTAHRTGEQGM 38
+++ GDI V+ GWL TGE+G
Sbjct: 18 REEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGD 68
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 32.1 bits (73), Expect = 0.022
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 49
DEL+ G V DGW W G+ G + V + +
Sbjct: 14 REDELSLVXGSRVTVMEXCSDGW-W-RGSYNGQIGWFPSNYVLEEVD 58
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 35.4 bits (80), Expect = 0.023
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI---FRDLVEDLDETIDPN 54
EL F+ GD+ F+ + + WL T G G+ F +++D E DP
Sbjct: 187 SKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKILKDFPEEDDPT 239
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 32.7 bits (75), Expect = 0.023
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 5 DELTFQKGDIFFV---HNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 48
+EL+ + + G+ W A G++G + + + +
Sbjct: 28 NELSVSANQKLKILEFKDVTGNTE-WWLAEVNGKKGYVPSNYIRKTE 73
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 32.2 bits (74), Expect = 0.023
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ EL F++GD V + W W
Sbjct: 15 EDGELGFRRGDFIHVMDNSDPNW-W 38
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 32.2 bits (74), Expect = 0.027
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFF-VHNELGDGWL 26
EL+F G +F VH GWL
Sbjct: 23 HDSELSFTAGTVFDNVHPSQEPGWL 47
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 31.7 bits (73), Expect = 0.028
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+L + GD + +L W +
Sbjct: 15 QDGDLGLKPGDKVQLLEKLSPEW-Y 38
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 32.5 bits (74), Expect = 0.035
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 3 DTDELTFQKGDIFFVHNELG-----DGWLWVTAHRTGEQGM 38
+ELT ++GD V ++ +GW W +G G+
Sbjct: 42 GDEELTLRRGDRVQVLSQDCAVSGDEGW-WTGQLPSGRVGV 81
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 32.3 bits (74), Expect = 0.036
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 5 DELTFQKGDIFFVHNELGD-GW 25
DEL+F++GDI V NE D W
Sbjct: 24 DELSFKRGDILKVLNEECDQNW 45
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 31.9 bits (73), Expect = 0.038
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ +ELTF+ G+I V ++ W W
Sbjct: 30 EDNELTFKAGEIITVLDDSDPNW-W 53
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.8 bits (79), Expect = 0.042
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 40 FRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHI 99
F ++E L + P+ K A D+L+ G+FL+R SD+ G ++ +
Sbjct: 447 FDGVMEVLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKF 506
Query: 100 NNQIQRFR 107
++ +
Sbjct: 507 DSPDRNLW 514
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (73), Expect = 0.044
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNELG--DGWLW 27
D EL+ ++GD+ +++ +G GW W
Sbjct: 20 DMRELSLREGDVVRIYSRIGGDQGW-W 45
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 31.9 bits (72), Expect = 0.049
Identities = 10/44 (22%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 3 DTDELTFQKGDIF-FVHNELGDGWLWVTAHRTGEQGMIFRDLVE 45
L GDI E W T E G + V
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.5 bits (72), Expect = 0.050
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 3 DTDELTFQKGDIFFVHN---ELGDGWLW 27
DEL+F +G I + N + DG+ W
Sbjct: 21 TDDELSFPEGAIIRILNKENQDDDGF-W 47
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 31.5 bits (72), Expect = 0.051
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 3 DTDELTFQKGDIFFVHNELG---DGWLWVTAHRTGEQGM 38
+DEL F +GDI + + +GW H G QG+
Sbjct: 20 CSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGL 56
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 31.4 bits (72), Expect = 0.055
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNE--LGDGWLW 27
+ DELTF++G+I + ++ GW W
Sbjct: 19 NEDELTFREGEIIHLISKETGEAGW-W 44
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 31.5 bits (72), Expect = 0.058
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNE--LGDGWLW 27
+ DELT ++GDI + N+ + GW W
Sbjct: 22 NDDELTIKEGDIVTLINKDCIDVGW-W 47
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 31.5 bits (72), Expect = 0.062
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLW 27
+ L F K DI V + + W W
Sbjct: 23 KDNHLNFSKHDIITVLEQQ-ENW-W 45
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 31.1 bits (71), Expect = 0.063
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 3 DTDELTFQKGDIFFVHN---ELGDGWLWVTAH-RTG 34
DEL+F+KGDI V + DGW + H R G
Sbjct: 16 SPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQG 51
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 34.4 bits (77), Expect = 0.066
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 2 PDTDELTFQKGDIFFV-HNELGDGWLWVTAHRTGEQGM 38
+ DEL+F+ GD +E GW G+ G+
Sbjct: 440 QEHDELSFKAGDELTKMEDEDEQGW-CKGRLDNGQVGL 476
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 31.3 bits (71), Expect = 0.092
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 DTDELTFQKGDIFFVHN--ELGDGWLWVTAH-RTG 34
+ L+F +GD+ + L GW + +A R+G
Sbjct: 21 NCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSG 55
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 32.0 bits (72), Expect = 0.097
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 5 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 40
+L+ Q GD+ + GD + QG IF
Sbjct: 74 PQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQG-IF 108
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 33.7 bits (76), Expect = 0.099
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
++T+ K + + W+W ++++ + + I +
Sbjct: 413 YSGCQITWAKFCKENMAGKGFSFWVW------------LDNIIDLVKKYILALWNEGYIM 460
Query: 62 PECTKNDAVDMLVKAGPGSFLVRPSDNS-PGDYSLFFHINNQIQRFRI 108
+K +L PG+FL+R S++S G + + + +I
Sbjct: 461 GFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQI 508
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 33.7 bits (76), Expect = 0.10
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFH 61
+ + + ++++ WLW ++E + + + P
Sbjct: 532 SPDGLIPWTRFCKENINDKNFPFWLW------------IESILELIKKHLLPLWNDGCIM 579
Query: 62 PECTKNDAVDMLVKAGPGSFLVRPSDNS 89
+K +L PG+FL+R S++S
Sbjct: 580 GFISKERERALLKDQQPGTFLLRFSESS 607
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 33.3 bits (75), Expect = 0.14
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 1 MPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWF 60
+ + + ++++ WLW ++E + + + P
Sbjct: 396 ASPDGLIPWTRFCKENINDKNFPFWLW------------IESILELIKKHLLPLWNDGCI 443
Query: 61 HPECTKNDAVDMLVKAGPGSFLVRPSDNS 89
+K +L PG+FL+R S++S
Sbjct: 444 MGFISKERERALLKDQQPGTFLLRFSESS 472
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 30.3 bits (69), Expect = 0.16
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNE--LGDGWLW 27
+ DELT ++GDI + N+ + GW W
Sbjct: 20 NDDELTIKEGDIVTLINKDCIDVGW-W 45
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 32.6 bits (74), Expect = 0.17
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVT 29
D EL F+ GD+ V + W W
Sbjct: 43 DDQELGFKAGDVIEVMDATNREWWWGR 69
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 29.9 bits (68), Expect = 0.21
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNE--LGDGWLW 27
+ DELT ++GDI + N+ + GW W
Sbjct: 15 NDDELTIKEGDIVTLINKDCIDVGW-W 40
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 32.6 bits (73), Expect = 0.21
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 1 MPDTDELTFQKGDIFFVHNELGD-----GWLWVTAHRTGEQGMIFRDLV 44
++ L+F KGD+ + ++ G+ GW RT ++G D V
Sbjct: 587 GEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 29.8 bits (67), Expect = 0.34
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 5 DELTFQKGDIFFV-----HNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDW 59
E+ +KGD+ + W W + G G I + +E + V D
Sbjct: 30 MEVALKKGDLMAILSKKDPLGRDSDW-WKVRTKNGNIGYIPYNYIEIIKRRKKIEHVDDE 88
Query: 60 FHPE 63
Sbjct: 89 TRTH 92
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 28.8 bits (64), Expect = 0.51
Identities = 10/44 (22%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 3 DTDELTFQKGDIFFV-HNELGDGWLWVTAHRTGEQGMIFRDLVE 45
L GDI + E W T E G + V
Sbjct: 23 FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 28.9 bits (65), Expect = 0.59
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 5 DELTFQKGDIFFVHN-----ELGDGWLWVTAHRTGEQGMI 39
E+ +KGD+ + + W W + G G I
Sbjct: 30 MEVALKKGDLMAILSKKDPLGRDSDW-WKVRTKNGNIGYI 68
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 30.4 bits (68), Expect = 0.60
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFD 58
+L+ Q GD+ + GD + QG+ + + + T++ +
Sbjct: 30 GAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEVTVEKRRNTE 85
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 29.2 bits (65), Expect = 0.66
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 9/62 (14%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGW--LW-------VTAHRTGEQGMIFRDLVEDLDETID 52
PD LT +G + +V ++L W G +V +
Sbjct: 34 PDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKP 93
Query: 53 PN 54
Sbjct: 94 GK 95
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 28.1 bits (63), Expect = 0.88
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 5 DELTFQKGDIFFV-----HNELGDGWLWVTAHRTGEQGMI 39
E+ +KGD+ + W W + G G I
Sbjct: 23 MEVALKKGDLMAILSKKDPLGRDSDW-WKVRTKNGNIGYI 61
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 30.5 bits (69), Expect = 0.92
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 257 FRYSHDLVMPSEEYSPLQQLLLESDLAVV----KALADVCHGDRNRLASSLLR 305
+ +V L+ L+ +S+ VV AL+++ N L
Sbjct: 149 HDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNP 201
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 27.5 bits (62), Expect = 0.96
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 3 DTDELTFQKGDIFFVHNEL--GDGWLW 27
++ +L F+KGD+ + + + W W
Sbjct: 16 ESGDLPFRKGDVITILKKSDSQNDW-W 41
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 27.7 bits (62), Expect = 1.4
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 3 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 40
+L FQ GD V ++ + W G+ G IF
Sbjct: 30 QPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTG-IF 66
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNT 55
+ DEL F KG I V N+ W +G+ G+ + V+ +
Sbjct: 14 QNDDELAFSKGQIINVLNKEDPDWWKGE--VSGQVGLFPSNYVKLTTDMDPSQQ 65
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 28.6 bits (63), Expect = 2.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 5 DELTFQKGDIFFVHNELGDGW 25
L F +GD+F V + L G
Sbjct: 19 SGLGFTRGDVFHVLDTLHPGP 39
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Length = 387
Score = 28.6 bits (63), Expect = 3.2
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 268 EEYSPLQQLLLESDLAVVKALADVCHG-DRNRLASSLLRIFS 308
E Y L LL + + K + + + S + +++
Sbjct: 12 EAYQHLFYLLQTNPTYLAKLIFQMPQNKSTKFMDSVIFTLYN 53
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 28.3 bits (62), Expect = 4.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 2 PDTDELTFQKGDIFFVHNELGDG-WLWVTAHRTGEQG 37
L+F KG++F V + L +G A R G+
Sbjct: 110 ESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 146
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 28.0 bits (63), Expect = 5.4
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 41 RDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLVRPSDN 88
DLVE L + ++P+ N+ V K G+F R +
Sbjct: 74 IDLVESLWAQAER------YNPDVVLNETVTKYTKLDDGTFETRTNTG 115
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex;
HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1
d.150.1.1
Length = 228
Score = 27.6 bits (61), Expect = 6.3
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 186 NQIQRFRIEKKAVRYLMG------------GRTFECLDAVINRYRKEQIVEGHTLGFPVT 233
+ +RF ++ A R L+G + Y K I + F ++
Sbjct: 30 EKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPDLPDAHFNIS 89
Query: 234 RTEDWFSLA 242
+ W A
Sbjct: 90 HSGRWVIGA 98
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 27.9 bits (61), Expect = 6.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 2 PDTDELTFQKGDIFFVHNELGDGWL-WVTAHRTGEQG 37
L+F KG++F V + L +G L A R G+
Sbjct: 118 ESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 154
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A
{Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Length = 435
Score = 27.8 bits (62), Expect = 6.4
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 207 FECLDAVINRYRKEQIVEGHTLGFPVTRTEDW 238
FE + ++ + + G P + E+W
Sbjct: 20 FEAEGTKRSPQAQQHLQQLLRTGLPTRKHENW 51
>1oy3_C Transcription factor P65; protein-protein complex, transcription
factors, nuclear localization, DNA binding protein;
2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Length = 136
Score = 26.9 bits (59), Expect = 6.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 81 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTF 122
L RPSD + F ++ + R RIE+K R ++
Sbjct: 81 QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKRTYETFKSI 122
Score = 26.9 bits (59), Expect = 6.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 166 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTF 207
L RPSD + F ++ + R RIE+K R ++
Sbjct: 81 QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKRTYETFKSI 122
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic
mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP}
SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Length = 141
Score = 26.9 bits (60), Expect = 7.0
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 199 RYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRTE-DWFS-------LAGVTPIGEW 250
R+L ++ +VE +G P+ + L T I EW
Sbjct: 29 RWLDAASR-NYFIKCGLPPWRQTVVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEW 87
Query: 251 GSLRLKFRY 259
R+
Sbjct: 88 RRKSFVQRH 96
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 27.2 bits (61), Expect = 8.6
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 41 RDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPGSFLV 83
++L+ +L E + F AV+ + K G F +
Sbjct: 67 QELINNLKEQMAK------FDQTICLEQAVESVEKQADGVFKL 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.430
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,886,206
Number of extensions: 361433
Number of successful extensions: 1235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 370
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)