BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13524
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GQI|A Chain A, Solution Structure Of The Sh3 Domain Of Human Ras Gtpase-
Activating Protein 1
Length = 71
Score = 92.0 bits (227), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
+R+ AILPYTK+PDTDE++F KGD+F VHNEL DGW+WVT RT EQG+I DLVE++
Sbjct: 8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>pdb|2J05|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J05|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J06|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
pdb|2J06|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
Length = 65
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
++R+ AILPYTK+PDTDE++F KGD F VHNEL DGW WVT RT EQG+I DLVE++
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 63
>pdb|4FSS|A Chain A, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|B Chain B, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|C Chain C, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
Length = 62
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
++R+ AILPYTK+PDTDE++F KGD F VHNEL DGW WVT RT EQG+I DLVE++
Sbjct: 2 RRRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 60
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRI-EKKAVRYLMGGRTFECLDAVINRYRKEQIV 59
SFLVRPSDN+PGDYSL+F N IQRF+I +++MGGR + + +I+ YRKEQIV
Sbjct: 40 SFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIV 99
Query: 60 EGHTLGFPV 68
EG+ L PV
Sbjct: 100 EGYYLKEPV 108
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
DP+ WFH + +K +A ++L+ G V +F + SD+T
Sbjct: 11 DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNT 49
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
KR A+ Y+ D DE++FQ GD ++ DGW++ T RTG+ GM+ + VE
Sbjct: 4 KRYRAVYDYSA-ADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQI 58
FL+R S++SP D+S+ + + F+++ K Y +G R F ++ ++ Y+K I
Sbjct: 30 FLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHYKKAPI 86
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQI 58
FL+R S++SP D+S+ + + F+++ K Y +G R F ++ ++ Y+K I
Sbjct: 26 FLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHYKKAPI 82
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
SFL RPS + GD+SL + +Q+ RI+ Y L GG F L ++ Y ++Q V
Sbjct: 26 SFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGV 85
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 1 SFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLMGG-RTFECLDAVI 50
+FLVR S + PGD+ L + ++ ++ + RY +GG TF+ L ++
Sbjct: 132 TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV 191
Query: 51 NRYRKEQIVEG 61
++K I E
Sbjct: 192 EHFKKTGIEEA 202
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
SFL RPS + GD+SL + +Q+ RI+ Y L GG F L ++ Y ++Q V
Sbjct: 26 SFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGV 85
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 1 SFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLMGG-RTFECLDAVI 50
+FLVR S + PGD+ L + ++ ++ + RY +GG TF+ L ++
Sbjct: 132 TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV 191
Query: 51 NRYRKEQIVEG 61
++K I E
Sbjct: 192 EHFKKTGIEEA 202
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A
Decaphosphopeptide From Translocated Intimin Receptor
(Tir) Of Epec
Length = 102
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQI 58
FL+R S++SP D+S+ + + + F+++ Y +G R F +D ++ Y+K I
Sbjct: 30 FLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPI 86
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D DE++F+ GD + +GW++ T RTG GM+ + VE
Sbjct: 16 DADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between
The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2
Domain
Length = 98
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQI 58
FL+R S++SP D+S+ + + + F+++ Y +G R F +D ++ Y+K I
Sbjct: 26 FLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPI 82
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
PP P + +++VAI YTK + DEL+FQ+G I +V + DGW
Sbjct: 9 PPWAPRSYLEKVVAIYDYTKDKE-DELSFQEGAIIYVIKKNDDGW 52
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 82 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 141
Query: 60 EGHTL 64
+
Sbjct: 142 RNQQI 146
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 138 AILPYT-KMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID 196
AI Y K DEL+F++GDI V NE D W A G+ G I ++ +E +
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQ-NWYKAELNGKDGFIPKNYIE-----MK 56
Query: 197 PNTVFDWFHPECTKNDAVDMLVKA-GPVNFTISESDST 233
P+ WF + + A +ML K F I ES+S
Sbjct: 57 PHP---WFFGKIPRAKAEEMLSKQRHDGAFLIRESESA 91
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D DE++F+ GD + DGW++ T RTG GM+ + +E
Sbjct: 19 DEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 25 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 84
Query: 60 EGHTL 64
+
Sbjct: 85 RNQQI 89
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 37 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 96
Query: 60 EGHTL 64
+
Sbjct: 97 RNQQI 101
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 86
Query: 60 EGHTL 64
+
Sbjct: 87 RNQQI 91
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With
Rlnpyaqlwhr Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex
With Rvipyfvplnr Peptide
Length = 109
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQ 57
SFL RPS ++PGD++L N + +I+ Y L GG F L ++ Y +
Sbjct: 31 SFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHH 88
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 31 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 90
Query: 60 EGHTL 64
+
Sbjct: 91 RNQQI 95
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2
Domain Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
Length = 98
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 28 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 87
Query: 60 EGHTL 64
+
Sbjct: 88 RNQQI 92
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 89
Query: 60 EGHTL 64
+
Sbjct: 90 RNQQI 94
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 89
Query: 60 EGHTL 64
+
Sbjct: 90 RNQQI 94
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 58
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 31 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 89
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 26 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 85
Query: 60 EGHTL 64
+
Sbjct: 86 RNQQI 90
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRY 53
SFL RPS ++PGD++L N + +I+ Y L GG F L ++ Y
Sbjct: 26 SFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYY 79
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 31 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 90
Query: 60 EGHTL 64
+
Sbjct: 91 RNQQI 95
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The
Grb2 Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 89
Query: 60 EGHTL 64
+
Sbjct: 90 RNQQI 94
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 28 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 87
Query: 60 EGHTL 64
+
Sbjct: 88 RNQQI 92
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 35 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 94
Query: 60 EGHTL 64
+
Sbjct: 95 RNQQI 99
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 86
Query: 60 EGHTL 64
+
Sbjct: 87 RNQQI 91
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQI 58
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 85
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + A +Y + F L+ +++ +R +
Sbjct: 36 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 95
Query: 60 EGHTL 64
+
Sbjct: 96 RNQQI 100
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR N P Y++ F +I+ R++++ ++G F+ L +I+ Y K +
Sbjct: 33 AFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYR 91
Query: 61 GHTLGFPVTRIN 72
L +P+ N
Sbjct: 92 KMKLRYPINEEN 103
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRY 53
SFL RPS ++PGD +L N + +I+ Y L GG F L ++ Y
Sbjct: 28 SFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYY 81
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 21/91 (23%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM-----------GGRTFECLDAV 49
SFLVR S + PGD+ L + K V ++M GG F+ L +
Sbjct: 134 SFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDL 193
Query: 50 INRYRKEQIVEGHTLG--------FPVTRIN 72
+ Y+K +VE TLG TRIN
Sbjct: 194 VEHYKKNPMVE--TLGTVLQLKQPLNTTRIN 222
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR N P Y++ F +I+ R++++ ++G F+ L +I+ Y K +
Sbjct: 146 AFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYR 204
Query: 61 GHTLGFPVTRINL 73
L +P+ L
Sbjct: 205 KMKLRYPINEEAL 217
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVINRYRK 55
SFLVR S+ GDY+L F N ++Q RI + +L F+ L +I Y++
Sbjct: 38 SFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQ 97
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR N P Y++ F +I+ R++++ ++G F+ L +I+ Y K +
Sbjct: 146 AFLVRKR-NEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYR 204
Query: 61 GHTLGFPVTRINL 73
L +P+ L
Sbjct: 205 KMKLRYPINEEAL 217
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVINRYRK 55
SFLVR S+ GDY+L F N ++Q RI + +L F+ L +I Y++
Sbjct: 38 SFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQ 97
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR N P Y++ F +I+ R++++ ++G F+ L +I+ Y K +
Sbjct: 146 AFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYR 204
Query: 61 GHTLGFPVTRINL 73
L +P+ L
Sbjct: 205 KMKLRYPINEEAL 217
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVINRYRK 55
SFLVR S+ GDY+L F N ++Q RI + +L F+ L +I Y++
Sbjct: 38 SFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQ 97
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVINRYRK 55
+FLVR S+ P DY+L F + ++Q RI YL TF + A+I YR+
Sbjct: 52 TFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYRE 111
Query: 56 EQI 58
+
Sbjct: 112 AHL 114
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 35.8 bits (81), Expect = 0.022, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 150 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 193
+LTF+KG+I V + DGW W+ G +G++ R +E E
Sbjct: 26 DLTFKKGEILLVIEKKPDGW-WIAKDAKGNEGLVPRTYLEPYSE 68
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 136 IVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETI 195
+VA+ Y + D L+FQKGD V E G+ W + T ++G I + V +
Sbjct: 12 VVALYDYEAIHHED-LSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYV----ARV 65
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPV--NFTISESDST 233
D +WF ++ DA L+ G + +F I +S++T
Sbjct: 66 DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 105
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-------RTFECLDAVINRY 53
SF++R S+ + G YSL + Q ++ +R L G TF L +++ Y
Sbjct: 96 SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY 155
Query: 54 RK 55
+K
Sbjct: 156 KK 157
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 136 IVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETI 195
+VA+ Y + D L+FQKGD V E G+ W + T ++G I + V +D
Sbjct: 5 VVALYDYEAIHHED-LSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVARVDSL- 61
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPV--NFTISESDST 233
+WF ++ DA L+ G + +F I +S++T
Sbjct: 62 ---ETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 98
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-------RTFECLDAVINRY 53
SF++R S+ + G YSL + Q ++ +R L G TF L +++ Y
Sbjct: 89 SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY 148
Query: 54 RK 55
+K
Sbjct: 149 KK 150
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 136 IVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETI 195
+VA+ Y + D L+FQKGD V E G+ W + T ++G I + V +D
Sbjct: 11 VVALYDYEAIHHED-LSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVARVDSL- 67
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPV--NFTISESDST 233
+WF ++ DA L+ G + +F I +S++T
Sbjct: 68 ---ETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 104
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-------RTFECLDAVINRY 53
SF++R S+ + G YSL + Q ++ +R L G TF L +++ Y
Sbjct: 95 SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY 154
Query: 54 RK 55
+K
Sbjct: 155 KK 156
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQI 58
F++R S +SPGD+S+ + +Q F++ + Y + F L+ +++ YR I
Sbjct: 33 FIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSI 90
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRY 53
FLVR S N PGDY+L + +++ +RI A + + FE L ++ Y
Sbjct: 32 FLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHY 84
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAH--RTGEQGMIFRDLVEDLDE 193
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I + V D
Sbjct: 89 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDS 144
Query: 194 TIDPNTVFDWFHPECTKNDAVDMLVKA-GPV-NFTISESDST 233
+W+ + T+ ++ +L+ A P F + ES++T
Sbjct: 145 I----QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 182
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID 196
VA+ Y + D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 7 VALYDYEARTE-DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV----APVD 61
Query: 197 PNTVFDWFHPECTKNDAVDMLVKAGP--VNFTISESDST 233
+W+ + + DA L+ G F I ES++T
Sbjct: 62 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETT 100
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAH--RTGEQGMIFRDLVEDLDE 193
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I + V D
Sbjct: 6 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDS 61
Query: 194 TIDPNTVFDWFHPECTKNDAVDMLVKA-GPV-NFTISESDST 233
+W+ + T+ ++ +L+ A P F + ES++T
Sbjct: 62 I----QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 99
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAH--RTGEQGMIFRDLVEDLDE 193
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I + V D
Sbjct: 6 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDS 61
Query: 194 TIDPNTVFDWFHPECTKNDAVDMLVKA-GPV-NFTISESDST 233
+W+ + T+ ++ +L+ A P F + ES++T
Sbjct: 62 I----QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 99
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAH--RTGEQGMIFRDLVEDLDE 193
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I + V D
Sbjct: 6 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSDS 61
Query: 194 TIDPNTVFDWFHPECTKNDAVDMLVKA-GPV-NFTISESDST 233
+W+ + T+ ++ +L+ A P F + ES++T
Sbjct: 62 I----QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 99
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 33.9 bits (76), Expect = 0.074, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 150 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
ELT QKGDI ++H E+ WL H G G+ + VE L
Sbjct: 23 ELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVEVL 62
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID 196
VA+ Y + D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 8 VALYDYEARTE-DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV----APVD 62
Query: 197 PNTVFDWFHPECTKNDAVDMLVKAGP--VNFTISESDST 233
+W+ + + DA L+ G F I ES++T
Sbjct: 63 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETT 101
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRY 53
FLVR S N PGDY+L + +++ +RI A + + FE L ++ Y
Sbjct: 32 FLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHY 84
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRY 53
FLVR S N PGDY+L +++ +RI A + + FE L ++ Y
Sbjct: 104 FLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHY 156
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 142 YTKMPDTDELTFQKGDIFFVHN-ELGDGWLWVTAHRTGEQGMIFRDLVEDL-DETIDP 197
+ P +ELT +G+I V N +G GWL + GEQG++ D VE L ++ DP
Sbjct: 18 FAAEPGNNELTVTEGEIITVTNPNVGGGWL-EGKNNKGEQGLVPTDYVEILPNDGKDP 74
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 150 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
ELT QKGDI ++H E+ WL H G G+ + VE L
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVEVL 56
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMIFRDLVEDLDE 193
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I + V D
Sbjct: 7 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLTTGQTGYIPSNYVAPSDS 62
Query: 194 TIDPNTVFDWFHPECTKNDAVDMLVKAGPVN----FTISESDST 233
+W+ + T+ ++ +L+ P N F + ES++T
Sbjct: 63 I----QAEEWYFGKITRRESERLLLN--PENPRGTFLVRESETT 100
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
DEL+F++GDI V NE D W A G+ G I ++ +E
Sbjct: 15 DELSFKRGDILKVLNEESDQ-NWYKAELNGKDGFIPKNYIE 54
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGGRTFECLDAVINRYR 54
FLVR S PGDY L N+++ + I R+ +G + F+ L A++ Y+
Sbjct: 36 FLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYK 89
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
D ++L F+KG+I + + + W W ++ G GMI VE L
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQW-WSARNKDGRVGMIPVPYVEKL 181
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGGRTFECLDAVINRYR 54
FLVR S PGDY L N+++ + I R+ +G + F+ L A++ Y+
Sbjct: 36 FLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYK 89
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
D ++L F+KG+I + + + W W ++ G GMI VE L
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQW-WSARNKDGRVGMIPVPYVEKL 181
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI A Y+ F L +++ + +
Sbjct: 39 SFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHH--STV 96
Query: 59 VEG--HTLGFPVTRIN 72
+G TL +P + N
Sbjct: 97 ADGLVTTLHYPAPKCN 112
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECL-----DAVINRYRK 55
S+L+R S PG Y+L +Q + FR+ ++ +G + FE + D +I Y +
Sbjct: 73 SYLIRESQRQPGTYTLALRFGSQTRNFRLYYDG-KHFVGEKRFESIHDLVTDGLITLYIE 131
Query: 56 EQIVE 60
+ E
Sbjct: 132 TKAAE 136
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
DELTF++GD VH + GW W G++G + + V+D+
Sbjct: 19 DELTFKEGDTIIVHQKDPAGW-W-EGELNGKRGWVPANYVQDI 59
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 31.6 bits (70), Expect = 0.44, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
DEL+F++GDI V NE D W A G+ G I ++ +E
Sbjct: 24 DELSFKRGDILKVLNEECDQ-NWYKAELNGKDGFIPKNYIE 63
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 31.2 bits (69), Expect = 0.45, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
DELTF++GD VH + GW W G++G + + V+D+
Sbjct: 18 DELTFKEGDTIIVHQKDPAGW-W-EGELNGKRGWVPANYVQDI 58
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGGRTFECLDAVINRYR 54
FLVR S PGDY L N+++ + I R+ +G + F+ L A++ Y+
Sbjct: 43 FLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYK 96
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 147 DTDELTFQKGD-IFFVHNELGDGWLWVTAHRTGEQGMI 183
D DE+T GD I V + G GW + TGE G++
Sbjct: 14 DDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLV 51
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRT-FECLDAVINRYRKEQIV 59
+FL+R + + Y++ F +++ RI + +++G FE L +++ Y K +
Sbjct: 43 AFLIRKREGT-DSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALY 101
Query: 60 EGHTLGFPVT 69
L +PVT
Sbjct: 102 RKMRLRYPVT 111
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 30.8 bits (68), Expect = 0.72, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 138 AILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
A+ YT + DEL GDI V E DGW W T R G++G + +E L
Sbjct: 13 ALYDYTAQ-NPDELDLSAGDILEVILEGEDGW-W-TVERNGQRGFVPGSYLEKL 63
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 150 ELTFQKGDIFFVHNELGDGWLWVTAH-RTGEQGMIFRDLVEDLDETIDPNTVFDWFHPEC 208
EL F+ GD+ F+ + + WL T TG + F +++D E DP ++ E
Sbjct: 190 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYED 249
Query: 209 TKNDAVDMLVK 219
T + D+ V+
Sbjct: 250 TISTIKDIAVE 260
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR-------TFECLDAVINRY 53
+FL+R S+ DY L ++ ++I ++A GGR +F L ++N +
Sbjct: 27 AFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRA-----GGRLHLNEAVSFLSLPELVNYH 81
Query: 54 RKEQIVEGHTLGFPVTR 70
R + + G L P +
Sbjct: 82 RAQSLSHGLRLAAPCRK 98
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 30.4 bits (67), Expect = 0.90, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 134 KRIVAILPYTKMPDTD-ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 188
+R VA+ Y P+ D EL +GDI F+ + G GWL + G++ + V
Sbjct: 2 QRAVAL--YDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 30.4 bits (67), Expect = 0.93, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 134 KRIVAILPYTKMPDTD-ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 188
+R VA+ Y P+ D EL +GDI F+ + G GWL + G++ + V
Sbjct: 6 QRAVAL--YDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
>pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide
Deformylase Complexed With Antibiotic Actinonin
Length = 184
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 119 RLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKG---DIFFVHNELGDGWLWVTAH 175
++A P P P DK+ + ++L Y KM EL + G I ++ + H
Sbjct: 17 KVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVH 76
Query: 176 RTGEQGMIF 184
T E G ++
Sbjct: 77 VTDENGTLY 85
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV------------------RYLMGGRTF 43
FLVR S SPGDY L N+++ + I R +G + F
Sbjct: 35 FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEF 94
Query: 44 ECLDAVINRYRKEQIVEGHTLGFPVTRINLG 74
+ L A++ Y K ++ TL PV+R G
Sbjct: 95 DSLPALLEFY-KIHYLDTTTLIEPVSRSRQG 124
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 147 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 182
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
R+ L + DEL +KGDI +H + +GW + + + G++G VE+L
Sbjct: 8 RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYVEEL 62
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 30.4 bits (67), Expect = 0.99, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 142 YTKMP-DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
Y+ +P + DEL + GDI V + DGW T+ RT + G + V+ L
Sbjct: 13 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV------------------RYLMGGRTF 43
FLVR S SPGDY L N+++ + I R +G + F
Sbjct: 37 FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEF 96
Query: 44 ECLDAVINRYRKEQIVEGHTLGFPVTRINLG 74
+ L A++ Y K ++ TL PV+R G
Sbjct: 97 DSLPALLEFY-KIHYLDTTTLIEPVSRSRQG 126
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 149 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 184
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEK------------------KAVRYLMGGRTF 43
FLVR S SPGDY L N+++ + I R +G + F
Sbjct: 35 FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEF 94
Query: 44 ECLDAVINRYRKEQIVEGHTLGFPVTRINLG 74
+ L A++ Y K ++ TL PV+R G
Sbjct: 95 DSLPALLEFY-KIHYLDTTTLIEPVSRSRQG 124
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 147 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 188
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLV 188
P+ KKR +L + DEL + GDI ++ E+ +GW W + + G+ + V
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGW-W-SGTLNNKLGLFPSNFV 59
Query: 189 EDLDET 194
++L+ T
Sbjct: 60 KELEVT 65
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV------------------RYLMGGRTF 43
FLVR S SPGDY L N+++ + I R +G + F
Sbjct: 34 FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEF 93
Query: 44 ECLDAVINRYRKEQIVEGHTLGFPVTRINLG 74
+ L A++ Y K ++ TL PV+R G
Sbjct: 94 DSLPALLEFY-KIHYLDTTTLIEPVSRSRQG 123
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV------------------RYLMGGRTF 43
FLVR S SPGDY L N+++ + I R +G + F
Sbjct: 24 FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEF 83
Query: 44 ECLDAVINRYRKEQIVEGHTLGFPVTR 70
+ L A++ Y K ++ TL PV+R
Sbjct: 84 DSLPALLEFY-KIHYLDTTTLIEPVSR 109
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ + +
Sbjct: 128 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHH--STV 185
Query: 59 VEG--HTLGFPVTRIN 72
+G TL +P + N
Sbjct: 186 ADGLITTLHYPAPKRN 201
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
VA+ Y + + D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 19 VALYDYEAITE-DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 1 SFLVRPSDNSPGDYSLFFHINN---------QIQRFRIEKKAVRYLMGG-RTFECLDAVI 50
+FLVR S + PGD+ L + ++ ++ + RY +GG TF+ L ++
Sbjct: 30 TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV 89
Query: 51 NRYRKEQIVE 60
++K I E
Sbjct: 90 EHFKKTGIEE 99
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 149 DELTFQKGDIFFV--HNELG-DGWLWVTAHRTGEQGMI 183
DEL+F+KGDI V + G DGW + H G QG++
Sbjct: 18 DELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIV 53
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ + +
Sbjct: 167 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHH--STV 224
Query: 59 VEG--HTLGFPVTRIN 72
+G TL +P + N
Sbjct: 225 ADGLITTLHYPAPKRN 240
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 142 YTKMP-DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQG 181
Y+ +P + DEL + GDI V + DGW T+ RT + G
Sbjct: 13 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFG 53
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
VA+ Y + + D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 4 VALYDYEAITE-DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 58
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVIN-RYRKEQIV 59
FLVR S PG+Y L + + Q + F I+ Y G F + +I+ Y +Q++
Sbjct: 39 FLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQVI 97
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ + +
Sbjct: 125 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHH--STV 182
Query: 59 VEG--HTLGFPVTRIN 72
+G TL +P + N
Sbjct: 183 ADGLITTLHYPAPKRN 198
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 14 DDEDLPFKKGDILKIRDKPEEQW-WNAEDMDGKRGMIPVPYVE 55
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 49
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
DTDEL+F DI + E GW W T G+QG+
Sbjct: 18 DTDELSFNANDIIDIIKEDPSGW-W-TGRLRGKQGL 51
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 27 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 68
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
DEL+F+KG I + N + D W A G++G+I + +E
Sbjct: 15 DELSFRKGQILKILN-MEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 136 IVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
+VA+ Y D+L+FQKGD V E G+ W
Sbjct: 6 VVALYDYVSWS-PDDLSFQKGDQMVVLEESGEWW 38
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ + +
Sbjct: 28 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHH--STV 85
Query: 59 VEG--HTLGFPVTRIN 72
+G TL +P + N
Sbjct: 86 ADGLITTLHYPAPKRN 101
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ + +
Sbjct: 39 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHH--STV 96
Query: 59 VEG--HTLGFPVTRIN 72
+G TL +P + N
Sbjct: 97 ADGLITTLHYPAPKRN 112
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 13 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 48
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 142 YTKMPD-TDELTFQKGDIFFV---HNELGDGWLWVTAHRTGEQGM 182
Y PD +DEL F +GDI + H +GW H G QG+
Sbjct: 14 YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGL 56
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMI 183
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I
Sbjct: 11 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLTTGQTGYI 56
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAHR--TGEQGMI 183
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I
Sbjct: 11 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLTTGQTGYI 56
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWV 172
PEP + VAI YT + + DE++ +G+ V ++L DGW WV
Sbjct: 75 PEPNYAGEPYVAIKAYTAV-EGDEVSLLEGEAVEVIHKLLDGW-WV 118
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 30 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWV 172
PEP + VAI YT + + DE++ +G+ V ++L DGW WV
Sbjct: 75 PEPNYAGEPYVAIKAYTAV-EGDEVSLLEGEAVEVIHKLLDGW-WV 118
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 20 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLWVTAH--RTGEQGMIFRDLVEDLD 192
VA+ Y +TD L+F+KG+ + V+N GD WL AH TG+ G I + V D
Sbjct: 6 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWL---AHSLSTGQTGYIPSNYVAPSD 60
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 49
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology
2 Domain Of C-Abl
Length = 109
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRI 29
SFLVR S++SPG S+ ++ +RI
Sbjct: 32 SFLVRESESSPGQRSISLRYEGRVYHYRI 60
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA 33
SFLVR S++SPG S+ ++ +RI +
Sbjct: 93 SFLVRESESSPGQRSISLRYEGRVYHYRINTAS 125
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRI-----EKKAVRYLMG--GRTFECLDAVINRY 53
SFLVR S++ Y+L N + +RI +K V+ G R F LD +I Y
Sbjct: 34 SFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFY 93
Query: 54 RKEQIVEGHTLGFPV 68
+KE + L +PV
Sbjct: 94 KKENMGLVTHLQYPV 108
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 18 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 20 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 16 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 57
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 16 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 57
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine
Fyn-Related Kinase
Length = 121
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEK--KAVRYLMGGRTFECLDAVINRY 53
+FL+R S++ GD+SL ++ +RI + + +L + F L+ +N Y
Sbjct: 41 AFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYY 95
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 19 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 16 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVED 190
++L FQ+GDI V +++ + WL G+ G+ + VED
Sbjct: 20 EDLEFQEGDIILVLSKVNEEWL--EGESKGKVGIFPKVFVED 59
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D+L+F KG+ F + N W V + TGE G I
Sbjct: 22 DDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYI 56
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVE 189
D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVE 55
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
D+L+F KG+ F + N W + TGE G I + V +D
Sbjct: 16 DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 136 IVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
+VA+ Y D+L+FQKGD V E G+ W
Sbjct: 6 VVALYDYVSW-SPDDLSFQKGDQMVVLEESGEWW 38
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWV 172
PEP + VAI YT + + DE++ +G+ V ++L DGW WV
Sbjct: 75 PEPNYAGEPYVAIKAYTAV-EGDEVSLLEGEAVEVIHKLLDGW-WV 118
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWV 172
PEP + VAI YT + + DE++ +G+ V ++L DGW WV
Sbjct: 74 PEPNYAGEPYVAIKAYTAV-EGDEVSLLEGEAVEVIHKLLDGW-WV 117
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVI 50
++++R S PG Y+L NQ +R+ ++ +G + FE + ++
Sbjct: 77 AYILRESQRQPGCYTLALRFGNQTLNYRLFHDG-KHFVGEKRFESIHDLV 125
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 20 INNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRINLGIFI 77
INN ++R R K + +L+G + + N R +V+G NLG+ I
Sbjct: 29 INNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAI 86
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 137 VAILPYTKMPDTDELTFQKGD-IFFVHNELGDGWLW--VTAHRTG 178
VA+ Y +TD L+F+KG+ + V+N GD WL +T RTG
Sbjct: 4 VALYDYESRTETD-LSFKKGERLQIVNNTEGDWWLAHSLTTGRTG 47
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 134 KRIVAIL---PYTKMPDTD---ELTFQKGDIFFVHNELG-DGWLWVTAHRTGEQGMIFRD 186
+R+VA+ P P+ D ELTF GDI V E+ DG+ + G++G++ +
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYY--GELNGQKGLVPSN 65
Query: 187 LVEDL 191
+E++
Sbjct: 66 FLEEV 70
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 142 YTKMPDT-DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID---- 196
YT P T DEL ++GDI ++ + W W + G G+I + V + E+ID
Sbjct: 21 YTFEPRTPDELYIEEGDIIYITDXSDTNW-WKGTSK-GRTGLIPSNYVAEQAESIDNPLH 78
Query: 197 ---PNTVFDWFHPECTKND-AVDMLVKAGPV 223
W EC N V+ L KAG
Sbjct: 79 EAAKRGNLSWLR-ECLDNRVGVNGLDKAGST 108
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 18 FHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVEGHTLGFPVTRINLGIF 76
F + I +R+ K A ++MG AV++ + ++G P T++ L F
Sbjct: 1029 FAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTF 1087
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 27.3 bits (59), Expect = 8.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 150 ELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
EL QKGDI +++ ++ W H G G+ R +E L
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTYIELL 62
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFEC-LDAVINRYRKEQ 57
FLVR S PGDY L + +R+ + + F C L ++ Y K++
Sbjct: 28 FLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHYSKDK 84
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG-------RTFECLDAVINRY 53
SF++R S+ + G YSL + Q ++ +R L G TF L +++ Y
Sbjct: 29 SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY 88
Query: 54 RK 55
+K
Sbjct: 89 KK 90
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
K+ ++A+ Y + E+T +KGDI + N W W T G QG + V+ LD
Sbjct: 6 KELVLALYDYQE-KSPREVTMKKGDILTLLNSTNKDW-WKT-EVNGRQGFVPAAYVKKLD 62
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFEC-LDAVINRYRKEQ 57
FLVR S PGDY L + +R+ + + F C L + Y K++
Sbjct: 29 FLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLXDXVEHYSKDK 85
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 26.9 bits (58), Expect = 9.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
K+ ++A+ Y + D+ E+T +KGDI + N W V + QG + V+ LD
Sbjct: 1 KELVLALYDYQEKGDS-EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLD 57
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 194
+++ + YT D DEL F KG I V N+ W W +G+ G+ + V+ L
Sbjct: 4 QVIGMYDYTAQND-DELAFSKGQIINVLNKEDPDW-W-KGEVSGQVGLFPSNYVK-LTTD 59
Query: 195 IDPNTVFDWFHPECTKNDAVDMLV 218
+DP+ + C+ +DML
Sbjct: 60 MDPSQQW------CSDLHLLDMLT 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,018,979
Number of Sequences: 62578
Number of extensions: 275582
Number of successful extensions: 819
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 185
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)