RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13524
(235 letters)
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 88.6 bits (220), Expect = 2e-23
Identities = 39/59 (66%), Positives = 50/59 (84%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
++R+ AILPYTK+PDTDE++F KGD+F VHNEL DGW+WVT RT EQG+I DLVE++
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 85.4 bits (212), Expect = 3e-22
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 193
+R+ AILPYTK+PDTDE++F KGD+F VHNEL DGW+WVT RT EQG+I DLVE++
Sbjct: 8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 86.2 bits (212), Expect = 3e-20
Identities = 42/211 (19%), Positives = 67/211 (31%), Gaps = 42/211 (19%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
FLVR S SPGDY L N+++ + I
Sbjct: 34 VFLVRDSSTSPGDYVLSVSENSRVSHYIINS----------------------------S 65
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCS----DLLK 116
G P + IG ++FDSL L+ +Y L++
Sbjct: 66 GPRPPVPPSPAQ---------PPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIE 116
Query: 117 RERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHR 176
+ ++ V L D ++L F+KGDI + ++ + W W
Sbjct: 117 PVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQW-WNAEDS 175
Query: 177 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPE 207
G++GMI VE + + E
Sbjct: 176 EGKRGMIPVPYVEKYRPASASVSALIGGNQE 206
Score = 41.5 bits (96), Expect = 1e-04
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 100 SLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIF 159
S + + P P + R++ D L + G++
Sbjct: 206 EGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVP-NAYDKTALALEVGELV 264
Query: 160 FVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 194
V G W G++G V LD+
Sbjct: 265 KVTKINVSGQ-W-EGECNGKRGHFPFTHVRLLDQQ 297
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 81.2 bits (201), Expect = 5e-20
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQIV 59
SFLVRPSDN+PGDYSL+F N IQRF+I ++MGGR + + +I+ YRKEQIV
Sbjct: 40 SFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIV 99
Query: 60 EGHTLGFPVTR 70
EG+ L PV
Sbjct: 100 EGYYLKEPVPM 110
Score = 50.0 bits (120), Expect = 2e-08
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 89 GDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEP 129
F +GGR ++S+ D+I +Y + L P P +
Sbjct: 74 NQFMMGGRYYNSIGDIIDHYRKEQIVEGY-YLKEPVPMQDQ 113
Score = 32.6 bits (75), Expect = 0.028
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 190 DLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
DP+ WFH + +K +A ++L+ G V +F + SD+T
Sbjct: 5 SSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNT 49
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 84.2 bits (207), Expect = 5e-20
Identities = 44/237 (18%), Positives = 72/237 (30%), Gaps = 46/237 (19%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
FLVR S SPGDY L N+++ + I R
Sbjct: 36 VFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRP------------------------ 71
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSD----LLK 116
+ A IG ++FDSL L+ +Y L++
Sbjct: 72 -------------PVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIE 118
Query: 117 RERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHR 176
+ ++ V L D ++L F+KGDI + ++ + W W
Sbjct: 119 PVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQW-WNAEDS 177
Query: 177 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
G++GMI VE P + + + + S +T
Sbjct: 178 EGKRGMIPVPYVEK----YRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNT 230
Score = 26.8 bits (58), Expect = 5.9
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
D W+ ++ +AV +L F + +S ++
Sbjct: 8 DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTS 45
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 76.6 bits (187), Expect = 9e-17
Identities = 39/234 (16%), Positives = 68/234 (29%), Gaps = 46/234 (19%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQIV 59
FLVR S PGDY L N+++ + I R + +G + F+ L A++ Y+ +
Sbjct: 35 MFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLD 94
Query: 60 EGHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRER 119
+ +
Sbjct: 95 TTTLIEPAPRYPS--------------------------------------------PPM 110
Query: 120 LAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGE 179
+ P D V L D ++L F+KG+I + + + W W ++ G
Sbjct: 111 GSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQW-WSARNKDGR 169
Query: 180 QGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
GMI VE L + + + + + S S
Sbjct: 170 VGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSP 223
Score = 36.5 bits (83), Expect = 0.004
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
A P D L + GDI V +G W G +
Sbjct: 226 AITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQ-W-EGEVNGRK 283
Query: 181 GMIFRDLVEDLDET 194
G+ V+ D
Sbjct: 284 GLFPFTHVKIFDPQ 297
Score = 26.9 bits (58), Expect = 6.8
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 194 TIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
D + W+ ++ +A L F + +S +
Sbjct: 5 RFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTC 44
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 71.5 bits (175), Expect = 2e-15
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR N P Y++ F +I+ R++++ ++G F+ L +I+ Y K +
Sbjct: 146 AFLVRKR-NEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYR 204
Query: 61 GHTLGFPVTR 70
L +P+
Sbjct: 205 KMKLRYPINE 214
Score = 69.2 bits (169), Expect = 2e-14
Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 53/178 (29%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-----YLMGGRTFECLDAVINRY-- 53
SFLVR S+ GDY+L F N ++Q RI + +L F+ L +I Y
Sbjct: 38 SFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQ 97
Query: 54 ----RKEQIVEGHTLGFPVTRINLGIFIPSAIFRVTAVC-------------------GD 90
E + + +++ R A
Sbjct: 98 VPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS 157
Query: 91 F----------------------YIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPP 126
+ +G +FDSL DLISYY K +L +P
Sbjct: 158 YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKM-KLRYPINE 214
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 71.5 bits (175), Expect = 3e-15
Identities = 37/234 (15%), Positives = 63/234 (26%), Gaps = 74/234 (31%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+L+R S N G ++L + + IE++ I
Sbjct: 30 LYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY-------------------AIAG 70
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
G T S +DL Y+S SD L L
Sbjct: 71 GRT----------------------------------HASPADLCHYHSQESDGLVC-LL 95
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
P P+ V K T D+ W + EQ
Sbjct: 96 KKPFNRPQGVQPK------------------TGPFEDLKENLIREYVKQTWNLQGQALEQ 137
Query: 181 GMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDS 232
+I + + + WFH + ++ ++ +++ N F I D+
Sbjct: 138 AIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN 191
Score = 64.6 bits (157), Expect = 1e-12
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
FL+R D + G Y+L ++ +RI+K + G+ F+ L ++ Y +
Sbjct: 183 KFLIRARD-NNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKAD 241
Query: 59 VEGHTLGFPVTRI 71
L P +I
Sbjct: 242 GLLRVLTVPCQKI 254
Score = 44.1 bits (104), Expect = 1e-05
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 GDFYI-GGRQFDSLSDLISYYSSCSDLLKRERLAHPCP 125
G I G++FD+L L+ +YS +D L R L PC
Sbjct: 216 GKLSIPEGKKFDTLWQLVEHYSYKADGLLR-VLTVPCQ 252
Score = 28.7 bits (64), Expect = 1.6
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 203 WFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
+F T+ +A D LV+ G + + + +S +
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNY 39
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 69.7 bits (170), Expect = 9e-15
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 88 CGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPD 147
G +++ +F+SL++L+ Y+ S S ++ E V + V L +
Sbjct: 115 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQI---FLRDIEQVPQQPTYVQALFDFDPQE 171
Query: 148 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETI 195
EL F++GD V + W W G+ GM R+ V ++ +
Sbjct: 172 DGELGFRRGDFIHVMDNSDPNW-W-KGACHGQTGMFPRNYVTPVNRNV 217
Score = 62.4 bits (151), Expect = 4e-12
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 194
+A + DEL+F++GDI V NE D W A G+ G I ++ +E
Sbjct: 2 EAIAKYDFKA-TADDELSFKRGDILKVLNEECDQN-WYKAELNGKDGFIPKNYIEMKPH- 58
Query: 195 IDPNTVFDWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
WF + + A +ML K F I ES+S
Sbjct: 59 -------PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESA 91
Score = 47.0 bits (111), Expect = 1e-06
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + +Y + F L+ +++ +R +
Sbjct: 82 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 141
Query: 60 EGHTLGFPVTRIN 72
+
Sbjct: 142 RNQQIFLRDIEQV 154
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 65.5 bits (160), Expect = 1e-14
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFV-HNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
+++ I P+T + L+F +GD+ + E DGWL+ T +G + L
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
Query: 192 DE 193
Sbjct: 67 SG 68
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 66.8 bits (163), Expect = 1e-14
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA------------------VRYLMGGRT 42
FLVR S SPGDY L N+++ + I R +G +
Sbjct: 23 VFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQE 82
Query: 43 FECLDAVINRYRKEQIVEGHTLGFPVTR 70
F+ L A++ Y+ + TL PV+R
Sbjct: 83 FDSLPALLEFYKIHYLDT-TTLIEPVSR 109
Score = 26.7 bits (59), Expect = 2.9
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 203 WFHPECTKNDAVDMLVKAGPVNFTISESDST 233
W+ ++ +AV +L F + +S ++
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTS 32
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide,
peptide binding protein; HET: PTR; 1.80A {Mus musculus}
SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 65.3 bits (160), Expect = 3e-14
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 59
F++R S +SPGD+S+ + +Q F++ + Y + F L+ +++ YR I
Sbjct: 32 FFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSIS 91
Query: 60 EGHTL 64
+ +
Sbjct: 92 KQKQV 96
Score = 41.0 bits (97), Expect = 3e-05
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 89 GDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
G++++ +F SL+ L+ YY + S +++
Sbjct: 66 GNYFLWTEKFPSLNKLVDYYRTTSISKQKQVF 97
Score = 25.6 bits (57), Expect = 5.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
+WFH +++ A ++L+ F I S S+
Sbjct: 10 EWFHEGLSRHQAENLLMGKDIGFFIIRASQSS 41
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex;
HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB:
1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A*
1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + +Y + F L+ +++ +R +
Sbjct: 27 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 86
Query: 60 EGHTL 64
+
Sbjct: 87 RNQQI 91
Score = 42.9 bits (102), Expect = 5e-06
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 88 CGDFYIGGRQFDSLSDLISYYSSCSDLLKRE 118
G +++ +F+SL++L+ Y+ S S ++
Sbjct: 60 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQ 90
Score = 26.4 bits (59), Expect = 3.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 202 DWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
WF + + A +ML K F I ES+S
Sbjct: 4 AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESA 36
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 63.9 bits (156), Expect = 2e-13
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIV- 59
FLVR S PG+Y L + + Q + F I+ Y G F + +I+ + + V
Sbjct: 38 DFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQVI 97
Query: 60 ---EGHTLGFPVTR 70
G L P+ +
Sbjct: 98 TKKSGVVLLNPIPK 111
Score = 52.3 bits (126), Expect = 3e-09
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 82 FRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRE---RLAHPCPPPE 128
F + V + G F ++ LI ++ + ++ ++ L +P P +
Sbjct: 64 FIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKDK 113
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 63.5 bits (155), Expect = 2e-13
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRYLMGGRTFECLDAVINRYRKEQIV 59
FLVR S+ G+ L F+ + + R+ A + + F+ + ++ +R I
Sbjct: 35 VFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDMLEHFRVHPIP 94
Query: 60 EGHTLGFPVTRINLGIFIPS 79
V L ++PS
Sbjct: 95 LESGGSSDVV---LVSYVPS 111
Score = 39.2 bits (92), Expect = 1e-04
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 89 GDFYIGGRQFDSLSDLISYYSSCSDLLKRE-----RLAHPCP 125
G + F S+ D++ ++ L+ L P
Sbjct: 69 GQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 63.8 bits (156), Expect = 2e-13
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
+FL+R + Y++ F +++ RI + + L FE L +++ Y K +
Sbjct: 43 AFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALY 101
Query: 60 EGHTLGFPVTR 70
L +PVT
Sbjct: 102 RKMRLRYPVTP 112
Score = 51.9 bits (125), Expect = 6e-09
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 82 FRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPP 126
R+ F +G F+SL +L+SYY + K RL +P P
Sbjct: 68 CRINRDGRHFVLGTSAYFESLVELVSYYEKHALYRKM-RLRYPVTP 112
Score = 25.7 bits (57), Expect = 9.0
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
+P+ W++ ++ +A DML++ F I + + T
Sbjct: 14 NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT 52
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 63.4 bits (155), Expect = 3e-13
Identities = 12/80 (15%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
++L+R +++ N++++ ++ +K + + F+ L ++ Y+ +
Sbjct: 39 TYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLK 98
Query: 60 EG-----HTLGFPVTRINLG 74
E TL +P + + G
Sbjct: 99 ESFKQLDTTLKYPYSGPSSG 118
Score = 43.0 bits (102), Expect = 7e-06
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 82 FRVTAVCGDFYI-GGRQFDSLSDLISYYSSCSDLLKRE----RLAHPCPPPE 128
+V +I ++FDSL +L+ YY S + L +P P
Sbjct: 65 IKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPS 116
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 63.1 bits (154), Expect = 3e-13
Identities = 23/129 (17%), Positives = 32/129 (24%), Gaps = 49/129 (37%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
SFLVR S++ Y+L N + +RI
Sbjct: 34 SFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT---------------------- 71
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
V + R F L LI +Y + L L
Sbjct: 72 --------------------------VQASEGVSMRFFTKLDQLIEFYKKENMGLVT-HL 104
Query: 121 AHPCPPPEP 129
+P P E
Sbjct: 105 QYPVPLEEE 113
Score = 27.3 bits (61), Expect = 2.2
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 203 WFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
W H T++ A ++L + G +F + S+S
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESI 43
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain,
phosphorylation, binding specificity; HET: PTR MPD;
1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 61.9 bits (151), Expect = 6e-13
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
FL+R S++SP D+S+ + + + F+++ Y +G R F +D ++ Y+K I
Sbjct: 29 DFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIFT 88
Query: 61 G 61
Sbjct: 89 S 89
Score = 43.0 bits (102), Expect = 5e-06
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 82 FRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPV 130
F+V V + IG R+F ++ +L+ +Y + +
Sbjct: 55 FKVQLVDNVYCIGQRRFHTMDELVEHYKKAP--IFTSEHGEKLYLVRAL 101
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 61.5 bits (150), Expect = 1e-12
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGRTFECLDAVINRYRKEQIV 59
+FL+R S+++PGD+SL N +Q F++ + +Y + F L+ +++ +R +
Sbjct: 30 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 89
Query: 60 EGHTLGFPVTR 70
+
Sbjct: 90 RNQQIFLRDIE 100
Score = 50.4 bits (121), Expect = 1e-08
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 88 CGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDK 133
G +++ +F+SL++L+ Y+ S S + ++ P
Sbjct: 63 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQ-QIFLRDIEQVPQQPT 107
Score = 26.1 bits (58), Expect = 6.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 202 DWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
WF + + A +ML K F I ES+S
Sbjct: 7 PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESA 39
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 65.6 bits (160), Expect = 1e-12
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
ND VA+ + D + L+ KG+ V +G W A QG
Sbjct: 33 NLLAGPSENDPNLFVALYDFVASGD-NTLSITKGEKLRVLGYNHNGE-WCEAQTKNGQGW 90
Query: 183 IFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
+ + + +++ W+H ++N A +L +F + ES+S+
Sbjct: 91 VPSNYIT-PVNSLEK---HSWYHGPVSRNAAEYLLSSGINGSFLVRESESS 137
Score = 50.2 bits (120), Expect = 2e-07
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA--VRYLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ +
Sbjct: 128 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVAD 187
Query: 59 VEGHTLGFPVTRIN 72
TL +P + N
Sbjct: 188 GLITTLHYPAPKRN 201
Score = 42.8 bits (101), Expect = 4e-05
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 89 GDFYI-GGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPD 147
G Y+ +F++L++L+ ++S+ +D L L +P P Y P+
Sbjct: 162 GKLYVSSESRFNTLAELVHHHSTVADGLIT-TLHYPAPKRNK---------PTIYGVSPN 211
Query: 148 TDELTFQKGDIFFVHNELGDG 168
D+ ++ DI ++LG G
Sbjct: 212 YDKWEMERTDITMK-HKLGGG 231
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 62.8 bits (152), Expect = 1e-12
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
PP P+ ++A+ Y D +L F+KG+ + + G+ W + TG++
Sbjct: 1 GGSNPPASPL-QDNLVIALHSYEPSHD-GDLGFEKGEQLRILEQSGE-WWKAQSLTTGQE 57
Query: 181 GMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
G I + + WF ++ DA L+ G + F I ES+ST
Sbjct: 58 GFI----PFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESEST 108
Score = 50.5 bits (120), Expect = 5e-08
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-------YLMGGRTFECLDAVINRY 53
SFL+R S+++ G +SL +Q Q ++ +R Y+ TF L ++ Y
Sbjct: 99 SFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY 158
Query: 54 RKEQIVEGHTLGFPVT 69
L P
Sbjct: 159 TNASDGLCTRLSRPCQ 174
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 61.1 bits (149), Expect = 2e-12
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEK-KAVRYLMGGRTFECLDAVINRYRKEQIV 59
FLVR S PGDY L N+++ + I R+ +G + F+ L A++ Y+ +
Sbjct: 42 MFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLD 101
Query: 60 EGHTLGFPVTR 70
TL P R
Sbjct: 102 T-TTLIEPAPR 111
Score = 46.9 bits (112), Expect = 2e-07
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 82 FRVTAVC-GDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCP 125
+ + ++ F IG ++FD L L+ +Y L P P
Sbjct: 68 YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTT--TLIEPAP 110
Score = 26.5 bits (59), Expect = 3.8
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 177 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
+G GM + D + W+ ++ +A L F + +S +
Sbjct: 3 SGSSGMSSARFD-----SSDRS---AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTC 51
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 61.5 bits (150), Expect = 2e-12
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
+FL+R S++ GD+SL ++ +RI + +L + F L+ +N Y
Sbjct: 41 AFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSD 100
Query: 59 VEGHTLGFPVTRIN 72
L P +I
Sbjct: 101 GLCVKLEKPCLKIQ 114
Score = 50.7 bits (122), Expect = 1e-08
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPPPEP 129
G F++ R F +L++ ++YY++ SD L +L PC +
Sbjct: 75 GGFFLTRRKVFSTLNEFVNYYTTTSDGLCV-KLEKPCLKIQV 115
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
WF + DA L+ + F I ES+S
Sbjct: 17 PWFFGAIKRADAEKQLLYSENQTGAFLIRESESQ 50
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 63.4 bits (154), Expect = 3e-12
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
FL+RP G Y+L + + I + + G F+ L ++ + +
Sbjct: 184 KFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKAD 242
Query: 59 VEGHTLGFPV 68
+ L
Sbjct: 243 GLIYCLKEAC 252
Score = 61.1 bits (148), Expect = 2e-11
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 22/148 (14%)
Query: 88 CGDFYI-GGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMP 146
G + I GG+ ++L +YS D L L PC P + + + L +
Sbjct: 64 NGTYAIAGGKAHCGPAELCEFYSRDPDGLPC-NLRKPCNRPSGLEPQPGVFDCLRDAMVR 122
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 206
D W EQ +I + + + W+H
Sbjct: 123 DYVR------------------QTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHS 164
Query: 207 ECTKNDAVDMLVKAGPVN--FTISESDS 232
T+ +A L + F +
Sbjct: 165 SLTREEAERKLYSGAQTDGKFLLRPRKE 192
Score = 51.4 bits (123), Expect = 4e-08
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
FL+R S G Y L + + F IE++ + GG+ + Y ++
Sbjct: 31 LFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPD 90
Query: 59 VEGHTLGFPVTR 70
L P R
Sbjct: 91 GLPCNLRKPCNR 102
Score = 44.1 bits (104), Expect = 1e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCP 125
G + I +FD+L L+ Y +D L L CP
Sbjct: 217 GKYCIPEGTKFDTLWQLVEYLKLKADGLIY-CLKEACP 253
Score = 32.2 bits (73), Expect = 0.11
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
DP +F+ ++ +A + L AG + F + + +
Sbjct: 1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRS 40
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 63.5 bits (155), Expect = 5e-12
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Query: 126 PPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFR 185
+A + + +L F KGD+ + D + ++ G +G+I
Sbjct: 4 IQASWPSGTECIAKYNFHGTAE-QDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPA 62
Query: 186 DLVE--DLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
+ V+ + + ++ WFH + T+ A +L F + ES +
Sbjct: 63 NYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNY 112
Score = 42.3 bits (100), Expect = 7e-05
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR-YLMGGRTFECLDAVINRYRKEQIV 59
FLVR S N PGDY+L +++ +RI A + + FE L ++ Y +
Sbjct: 103 LFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDADG 162
Query: 60 EGHTLGFPVTR 70
L P
Sbjct: 163 LCTRLIKPKVM 173
Score = 42.3 bits (100), Expect = 7e-05
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 82 FRVTAVCGDFYIG-GRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAIL 140
+R+ I F++L L+ +Y++ +D L RL P V
Sbjct: 129 YRIMYHASKLSIDEEVYFENLMQLVEHYTTDADGLCT-RLIKPKVMEGTV---------- 177
Query: 141 PYTKMPDTDELTFQKGDIFFVHNELGDG 168
++ + +G G
Sbjct: 178 AAQDEFYRSGWALNMKELKLLQ-TIGKG 204
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 61.3 bits (148), Expect = 6e-12
Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 88 CGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPD 147
I + F + L++++ + +V +T
Sbjct: 79 AAGVKIANQSFPDIPALLNHFKMRVLTE------ASLLAAYKKPIIEVVVGTFKFTG-ER 131
Query: 148 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+L F++G+ + ++ W W + G G++
Sbjct: 132 ETDLPFEQGERLEILSKTNQDW-WEARNALGTTGLV 166
Score = 26.7 bits (58), Expect = 6.2
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 193 ETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDSTFL 235
DP ++ P ++ +A +L + S TFL
Sbjct: 4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQV-------SIGTFL 39
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 59.1 bits (144), Expect = 6e-12
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
FLVR S N PGDY+L + +++ +RI A + + FE L ++ Y +
Sbjct: 31 LFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTSDADG 90
Query: 60 EGHTLGFPVTRIN 72
L P
Sbjct: 91 LCTRLIKPKVMEG 103
Score = 49.5 bits (119), Expect = 2e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 82 FRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPV 130
+R+ I F++L L+ +Y+S +D L RL P V
Sbjct: 57 YRIMYHASKLSIDEEVYFENLMQLVEHYTSDADGLCT-RLIKPKVMEGTV 105
Score = 26.0 bits (58), Expect = 5.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
WFH + T+ A +L F + ES +
Sbjct: 9 PWFHGKITREQAERLLYPPETGLFLVRESTNY 40
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 59.6 bits (145), Expect = 7e-12
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI A Y+ F L +++ +
Sbjct: 39 SFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHHSTVAD 98
Query: 59 VEGHTLGFPVTRIN 72
TL +P + N
Sbjct: 99 GLVTTLHYPAPKCN 112
Score = 47.6 bits (114), Expect = 2e-07
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPPPEP 129
G Y+ +F +L++L+ ++S+ +D L L +P P
Sbjct: 73 GKVYVTAESRFSTLAELVHHHSTVADGLVT-TLHYPAPKCNK 113
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 59.2 bits (144), Expect = 7e-12
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA-VRYLMGGRTFECLDAVINRYR----- 54
SFL RPS ++PGD++L N + +I+ L GG F L ++ Y
Sbjct: 31 SFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQ 90
Query: 55 -KEQIVEGHTLGFPVTRIN 72
KE+ + L +P+ +
Sbjct: 91 LKEKNGDVIELKYPLNCAD 109
Score = 46.9 bits (112), Expect = 3e-07
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 82 FRVTAVCGDFYI-GGRQFDSLSDLISYYSSCSDLLKRE-----RLAHPCPPPE 128
++ + + GG +F +L++L+ YY LK + L +P +
Sbjct: 57 IKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCAD 109
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 59.2 bits (144), Expect = 8e-12
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 50/125 (40%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
FL+R S ++P + L + +I+ F+I G+TF LD
Sbjct: 30 LFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCED----DGQTFFSLDD------------ 73
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
G +F L L+ +Y +L +L
Sbjct: 74 ---------------------------------GNTKFSDLIQLVDFYQLNKGVLPC-KL 99
Query: 121 AHPCP 125
H C
Sbjct: 100 KHHCI 104
Score = 28.0 bits (63), Expect = 0.93
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
WFH ++ ++ ++ + G V+ F + +S S
Sbjct: 6 HWFHGRISREESHRIIKQQGLVDGLFLLRDSQSN 39
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 58.8 bits (143), Expect = 8e-12
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIV- 59
FLVR S +PG Y L + Q + + FE + +I+ + +
Sbjct: 28 DFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPI 87
Query: 60 ----EGHTLGFPVTR 70
L PV R
Sbjct: 88 ISAGSELCLQQPVER 102
Score = 43.0 bits (102), Expect = 5e-06
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 82 FRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRE----RLAHPCP 125
+ G +F+S+S LISY+ + L P
Sbjct: 54 LLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVE 101
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 59.2 bits (144), Expect = 1e-11
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM------GGRTFECLDAVINRYR 54
FLVR S +P + L +++ + I + G F L ++ ++
Sbjct: 39 LFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQ 98
Query: 55 KEQIVEGHTLGFPVTRINL 73
+ + L TR+ L
Sbjct: 99 LNRGILPCLLRHCCTRVAL 117
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 59.9 bits (145), Expect = 1e-11
Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 52/131 (39%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR S+ P DY+L F + ++Q RI E
Sbjct: 52 TFLVRESETFPNDYTLSFWRSGRVQHCRIRSTM--------------------------E 85
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLK--RE 118
+ + + F+S+ LI +Y
Sbjct: 86 NGVMKY------------------------YLTDNLTFNSIYALIQHYREAHLRCAEFEL 121
Query: 119 RLAHPCPPPEP 129
RL P P P P
Sbjct: 122 RLTDPVPNPNP 132
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 57.3 bits (139), Expect = 1e-11
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
A+ Y + DEL ++GD V + DGW + RT + G
Sbjct: 8 TPYRAMYQYRP-QNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTF 56
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 58.9 bits (143), Expect = 2e-11
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA------VRYLMGGRTFECLDAVINRYR 54
FLVR S ++P + L +I+ F+I G F L ++ Y+
Sbjct: 51 VFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQ 110
Query: 55 KEQIVEGHTLGFPVTR 70
+ V L R
Sbjct: 111 LNKGVLPCKLKHYCAR 126
Score = 30.0 bits (68), Expect = 0.32
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
WFH + ++++A ++++ G V+ F + +S S
Sbjct: 27 PWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSN 60
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 57.9 bits (140), Expect = 3e-11
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
P VA+ Y T++L+F+KG+ F + N W + TG+ G
Sbjct: 17 SSYPTGLTGGVTIFVALYDYEAR-TTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGY 75
Query: 183 IFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDML 217
I + V D +W+ + + DA
Sbjct: 76 IPSNYVVP----ADSIQAEEWYFGKMGRKDAESGP 106
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 57.8 bits (140), Expect = 3e-11
Identities = 17/133 (12%), Positives = 31/133 (23%), Gaps = 49/133 (36%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
S+L+R S++ PG Y L + I +R+ +
Sbjct: 28 SYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWS---------------------- 65
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
+ R F + +LIS + + L
Sbjct: 66 --------------------------AETAPGVHKRYFRKIKNLISAFQKPDQGIVI-PL 98
Query: 121 AHPCPPPEPVNDK 133
+P
Sbjct: 99 QYPVEKKSSARST 111
Score = 27.0 bits (60), Expect = 3.5
Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 202 DWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
+H + ++ +L+ G ++ + +S+S
Sbjct: 5 AVYHGKISRETGEKLLLATGLDGSYLLRDSESV 37
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution
structure, backbone dynamics, transferase; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 100
Score = 56.8 bits (138), Expect = 5e-11
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
+FL+R S+ DY L ++ ++I ++A +L +F L ++N +R + +
Sbjct: 27 AFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSL 86
Query: 59 VEGHTLGFPVTR 70
G L P +
Sbjct: 87 SHGLRLAAPCRK 98
Score = 48.3 bits (116), Expect = 6e-08
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPPPE 128
G ++ F SL +L++Y+ + S RLA PC E
Sbjct: 61 GRLHLNEAVSFLSLPELVNYHRAQSLSHGL-RLAAPCRKHE 100
Score = 27.1 bits (61), Expect = 2.3
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
WF ++++AV L G F I S+
Sbjct: 3 PWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKP 36
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 56.0 bits (136), Expect = 8e-11
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR-TFECLDAVINRYRKEQIV 59
FLVR S PGDY L + +R+ + + F L ++ Y K++
Sbjct: 28 LFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHYSKDKGA 87
Query: 60 EGHTLGFPVTR 70
L P +
Sbjct: 88 ICTKLVRPKRK 98
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 82 FRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCP 125
+RV G I F +L D++ +YS + +L P
Sbjct: 54 YRVLHRDGHLTIDEAVFFCNLMDMVEHYSKDKGAICT-KLVRPKR 97
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 56.6 bits (137), Expect = 1e-10
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 52/126 (41%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
SFL+R S+++ G +SL + V+ Y+
Sbjct: 37 SFLIRESESNKGAFSLSV----------------------KDITTQGEVVKHYK------ 68
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRER 119
I + G +YI R F +L L+ +YS D L + +
Sbjct: 69 --------------------IRSLD--NGGYYISPRITFPTLQALVQHYSKKGDGLCQ-K 105
Query: 120 LAHPCP 125
L PC
Sbjct: 106 LTLPCV 111
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
WF ++ DA L+ F I ES+S
Sbjct: 13 KWFFRTISRKDAERQLLAPMNKAGSFLIRESESN 46
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 55.0 bits (133), Expect = 1e-10
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ A + + EL +KGDI F+ + GW ++G +
Sbjct: 2 DPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWV 52
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 59.1 bits (142), Expect = 1e-10
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 88 CGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPD 147
I + F + L++++ A+ P E V V +T
Sbjct: 108 AAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV------VGTFKFTG-ER 160
Query: 148 TDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPE 207
+L F++G+ + ++ W W + G G++ + V+ E + T
Sbjct: 161 ETDLPFEQGERLEILSKTNQDW-WEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSS 219
Query: 208 CTKNDA 213
+
Sbjct: 220 IGSSGG 225
Score = 36.7 bits (84), Expect = 0.004
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 106 SYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMP---DTDELTFQKGDIFFVH 162
S S +R A + + A + + ++P D +L +KG V
Sbjct: 218 SSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVT 277
Query: 163 NELGDGWLWVTAHRTGEQGMIFRDLVEDLDET 194
++ +G + A G+ G + + +
Sbjct: 278 QKMSNGM-YK-AELDGQIGSVPHTYLRFTAVS 307
Score = 30.2 bits (67), Expect = 0.49
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 171 WVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTIS 228
A TG Q M DP ++ P ++ +A +L + F +
Sbjct: 19 SHMASMTGGQQMT--------TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMR 70
Query: 229 ESDS 232
+S
Sbjct: 71 DSSR 74
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 55.4 bits (134), Expect = 2e-10
Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 49/125 (39%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
S+L+R S++ PG Y L + I +R+ G
Sbjct: 28 SYLLRDSESVPGVYCLCVLYHGYIYTYRV-----SQTETGSWS----------------- 65
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
+ R F + +LIS + + L
Sbjct: 66 --------------------------AETAPGVHKRYFRKIKNLISAFQKPDQGIVI-PL 98
Query: 121 AHPCP 125
+P
Sbjct: 99 QYPVE 103
Score = 26.5 bits (59), Expect = 3.1
Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 202 DWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
+H + ++ +L+ G ++ + +S+S
Sbjct: 5 AVYHGKISRETGEKLLLATGLDGSYLLRDSESV 37
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 55.8 bits (135), Expect = 2e-10
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 51/130 (39%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+F+VR S G Y++ +V T +A I Y+
Sbjct: 40 AFIVRDSR-HLGSYTI----------------SVFMGARRST----EAAIKHYQ------ 72
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRER 119
I + G +Y+ R F S+ +LI Y+ + L R
Sbjct: 73 --------------------IKK--NDSGQWYVAERHAFQSIPELIWYHQHNAAGLMT-R 109
Query: 120 LAHPCPPPEP 129
L +P
Sbjct: 110 LRYPVGLMGS 119
Score = 26.1 bits (58), Expect = 6.3
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 201 FDWFHPECTKNDAVDMLVKAGPV-NFTISESDS 232
++W+H T+N A +L + F + +S
Sbjct: 16 YEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH 48
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 53.8 bits (130), Expect = 3e-10
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
VA+ Y+ +EL QKG+ V + DGWL + TG G+
Sbjct: 8 NMFVALHTYSAH-RPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIF 56
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 54.5 bits (132), Expect = 4e-10
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
SFLVR S++SPG S+ ++ +RI + Y+ F L +++ +
Sbjct: 28 SFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVAD 87
Query: 59 VEGHTLGFPVTRIN 72
TL +P + N
Sbjct: 88 GLITTLHYPAPKRN 101
Score = 48.4 bits (116), Expect = 8e-08
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPPPEP 129
G Y+ +F++L++L+ ++S+ +D L L +P P
Sbjct: 62 GKLYVSSESRFNTLAELVHHHSTVADGLIT-TLHYPAPKRNK 102
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 54.7 bits (132), Expect = 6e-10
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKK-AVRYLMGGRTFECLDAVINRYRKEQIV 59
+FLVR ++++ N +++ +I + + + F L ++ Y++ +
Sbjct: 49 TFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLK 108
Query: 60 EGH-----TLGFPVTR 70
+ TL FP
Sbjct: 109 DCFKSLDTTLQFPFKE 124
Score = 46.2 bits (110), Expect = 7e-07
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 82 FRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRE----RLAHPCPPPEP 129
++ G + I + F L++L+ +Y S + L P PE
Sbjct: 75 IKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEK 127
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 52.3 bits (126), Expect = 1e-09
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
VA+ Y + D+L+F KG+ F + N W + TGE G I
Sbjct: 7 LRTRGGTGVTLFVALYDYEAI-TEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYI 64
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 53.0 bits (128), Expect = 1e-09
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 51/126 (40%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FL+R S+ + G YSL + ++ ++ Y+ ++
Sbjct: 30 TFLIRESETTKGAYSLSIRDWDDMKGDHVK---------------------HYKIRKLDN 68
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRER 119
G +YI R QF++L L+ +YS + L R
Sbjct: 69 GG----------------------------YYITTRAQFETLQQLVQHYSERAAGLSS-R 99
Query: 120 LAHPCP 125
L P
Sbjct: 100 LVVPSH 105
Score = 27.6 bits (62), Expect = 1.3
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
+W+ + + DA L+ G F I ES++T
Sbjct: 6 EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETT 39
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 52.4 bits (126), Expect = 1e-09
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD--ET 194
A+ Y + D+L+F KG+ F + N W + TGE G I + +D +
Sbjct: 9 EALYDYEARTE-DDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDY 67
Query: 195 IDPNTVFDWFH 205
D + H
Sbjct: 68 KDDDDKHHHHH 78
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 51.9 bits (125), Expect = 2e-09
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHN-ELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
K+++ I P+T + L+F +GD+ + E DGWL+ + +G + L
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65
Query: 192 DE 193
+E
Sbjct: 66 EE 67
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 51.5 bits (124), Expect = 2e-09
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHN-ELGDGWLWVTAHRTGEQGM 182
P + + R+ AI + ++ L+F++GD+ + E DGW + + +T +G
Sbjct: 2 PLG---SGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGW 57
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 53.1 bits (128), Expect = 2e-09
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 51/130 (39%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
F+VR S G Y++ +V G VI Y +
Sbjct: 35 GFIVRDSSK-AGKYTV----------------SVFAKSTGDP----QGVIRHYVVCSTPQ 73
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRER 119
+Y+ + F ++ +LI+Y+ S L R
Sbjct: 74 SQ----------------------------YYLAEKHLFSTIPELINYHQHNSAGLIS-R 104
Query: 120 LAHPCPPPEP 129
L +P
Sbjct: 105 LKYPVSQQNK 114
Score = 26.1 bits (58), Expect = 5.1
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 193 ETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDSTFL 235
E D +++W+ T++ A +L + G + F+
Sbjct: 3 EAEDSIEMYEWYSKHMTRSQAEQLLKQEGK--------EGGFI 37
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 50.7 bits (122), Expect = 3e-09
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
A + EL +KGD+ ++ E GW ++G +
Sbjct: 4 EAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWV 50
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 51.9 bits (125), Expect = 3e-09
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 49/125 (39%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FL+R S++ PG L + +RI ++ Y
Sbjct: 27 NFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYY----------------------- 63
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
+ D + F +L +L+S Y L L
Sbjct: 64 -------------------------RIETDAHTPRTIFPNLQELVSKYGKPGQGLVV-HL 97
Query: 121 AHPCP 125
++P
Sbjct: 98 SNPIM 102
Score = 26.5 bits (59), Expect = 4.0
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 203 WFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
++H TK + +L+K G NF I +S+S
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESV 36
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 52.4 bits (126), Expect = 3e-09
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIV- 59
FLVR S +Y L + + F I+ Y + G F + +I+ Q
Sbjct: 37 DFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPL 95
Query: 60 ---EGHTLGFPVTR 70
G L V
Sbjct: 96 TKKSGVVLHRAVPS 109
Score = 42.4 bits (100), Expect = 1e-05
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 82 FRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRE---RLAHPCPPP 127
F + ++ + + G F S+ LI + S L ++ L P
Sbjct: 62 FIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPSG 110
Score = 25.4 bits (56), Expect = 9.3
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
W+H + + ++LV +G +F + ES
Sbjct: 17 LWYHGAIPRAEVAELLVHSG--DFLVRESQGK 46
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 55.0 bits (132), Expect = 6e-09
Identities = 36/235 (15%), Positives = 58/235 (24%), Gaps = 74/235 (31%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
FL+R S G Y L + + F IE++
Sbjct: 33 LFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL--------------------------- 65
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
N I GG+ ++L +YS D L L
Sbjct: 66 -----------NGTYAI---------------AGGKAHCGPAELCEFYSRDPDGLPC-NL 98
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
PC P + + + L + D T W EQ
Sbjct: 99 RKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQT------------------WKLEGEALEQ 140
Query: 181 GMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
+I + + + W+H T+ +A L + F +
Sbjct: 141 AIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ 195
Score = 50.3 bits (120), Expect = 2e-07
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 10/170 (5%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
FL+RP G Y+L + + I + + G F+ L ++ + +
Sbjct: 186 KFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKAD 244
Query: 59 VEGHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRE 118
+ L + +A + A R+ D+L+
Sbjct: 245 GLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTHPQRRIDTLNSDGYTPEPA------- 297
Query: 119 RLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDG 168
R+ P P D + + +L ++ ++ ELG G
Sbjct: 298 RITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLLIADIELGCG 347
Score = 28.8 bits (64), Expect = 1.8
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 196 DPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
DP +F+ ++ +A + L AG + F + + +
Sbjct: 3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRS 42
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 50.0 bits (120), Expect = 9e-09
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
AI + DEL + D V + D W RTG +G+
Sbjct: 10 RAIFRFVPR-HEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGV 54
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 50.0 bits (120), Expect = 9e-09
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
D ++ + DE+T Q+ D+ V + DGWL+ R GE G
Sbjct: 9 QGLSSKGDLPQVEITKAFFAK-QADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGW 64
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 49.6 bits (119), Expect = 1e-08
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
+ + +A+ +T +LTF+KG+I V + DGW W+ G +G++
Sbjct: 2 SESHKWSTGEEYIAVGDFTAQ-QVGDLTFKKGEILLVIEKKPDGW-WIAKDAKGNEGLVP 59
Query: 185 RDLVEDLDE 193
R +E E
Sbjct: 60 RTYLEPYSE 68
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 50.8 bits (122), Expect = 1e-08
Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 50/134 (37%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+F+VR S +PG Y++ +V + + I Y
Sbjct: 33 AFMVRDSR-TPGTYTV----------------SVFT----KAIISENPCIKHYH------ 65
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRER 119
I +Y+ + FDS+ LI Y+ L R
Sbjct: 66 --------------------IKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-R 104
Query: 120 LAHPCPP-PEPVND 132
L +P P D
Sbjct: 105 LRYPVCGSPGIHRD 118
Score = 28.1 bits (63), Expect = 1.3
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 197 PNTV--FDWFHPECTKNDAVDMLVKAGPV-NFTISESDS 232
PN + ++W++ +++ A +L+ G F + +S +
Sbjct: 3 PNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT 41
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
++ AI + DEL + D V + D W RTG +G+
Sbjct: 3 EQTHRAIFRFVPR-HEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGV 51
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 50.8 bits (122), Expect = 1e-08
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAV-RYLMGGR--TFECLDAVINRYRKEQ 57
SFL+R S + G Y+L + + F ++ +++ G LDA++ ++++
Sbjct: 39 SFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKP 97
Query: 58 IVE-GHTLGFPVTRIN 72
I L P + +
Sbjct: 98 IEPRRELLTQPCRQKD 113
Score = 50.8 bits (122), Expect = 1e-08
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 82 FRVTAVC-GDFYIGGRQ--FDSLSDLISYYSSCSDLLKRERLAHPCPPPEP 129
F V + G F I G + SL L++++ +RE L PC +
Sbjct: 64 FMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDS 114
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 195 IDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
+ + V +WFH ++ DA ++L +F I S S
Sbjct: 10 LAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSH 48
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 53.6 bits (129), Expect = 1e-08
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRD 186
+ +VA+ Y + ++L+FQKGD V E G+ W + T ++G I +
Sbjct: 2 AMGSGIRIIVVALYDYEAIHH-EDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSN 59
Query: 187 LVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAG--PVNFTISESDST 233
V ++++ +WF ++ DA L+ G +F I +S++T
Sbjct: 60 YVA-RVDSLE---TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 104
Score = 46.2 bits (110), Expect = 3e-06
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 1 SFLVRPSDNSPGDYSL-----FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRY 53
SF++R S+ + G YSL + ++ ++I Y+ TF L +++ Y
Sbjct: 95 SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY 154
Query: 54 RKEQIVEGHTLGFPVTR 70
+K L P
Sbjct: 155 KKGNDGLCQKLSVPCMS 171
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 50.0 bits (120), Expect = 2e-08
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 51/126 (40%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
SFL+R S+++ G +SL +VR + + Y+ +
Sbjct: 29 SFLIRESESTAGSFSL----------------SVRDFDQNQGEV-----VKHYKIRNLDN 67
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRER 119
G FYI R F L +L+ +Y++ SD L R
Sbjct: 68 GG----------------------------FYISPRITFPGLHELVRHYTNASDGLCT-R 98
Query: 120 LAHPCP 125
L+ PC
Sbjct: 99 LSRPCQ 104
Score = 28.0 bits (63), Expect = 0.98
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
WF ++ DA L+ G + F I ES+ST
Sbjct: 5 PWFFKNLSRKDAERQLLAPGNTHGSFLIRESEST 38
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 49.0 bits (117), Expect = 2e-08
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
P P PE ++ + + Y D F++G+ V ++ G W + TG +
Sbjct: 8 PLPNPEGLDSD-FLAVLSDYPSP-DISPPIFRRGEKLRVISDEGGWW-KAISLSTGRESY 64
Query: 183 I 183
I
Sbjct: 65 I 65
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 50.0 bits (120), Expect = 2e-08
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 1 SFLVRPS-DNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQI 58
+FLVR + GDY+L + +I + +Y TF + +IN YR E +
Sbjct: 34 TFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESL 93
Query: 59 VEG-----HTLGFPVTRIN 72
+ L +PV++
Sbjct: 94 AQYNPKLDVKLLYPVSKYQ 112
Score = 40.7 bits (96), Expect = 4e-05
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 82 FRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRE----RLAHPCPPPEPV 130
++ G + F S+ +LI++Y + S +L +P +
Sbjct: 61 IKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 114
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+R VA+ + D +EL +GDI F+ + G GWL + G++
Sbjct: 2 QRAVALYDFEPEND-NELRLAEGDIVFISYKHGQGWLVAENESGSKTGLV 50
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 48.5 bits (116), Expect = 3e-08
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
+R VA+ + D +EL +GDI F+ + G GWL + G++ + V +
Sbjct: 5 NQRAVALYDFEPEND-NELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
Query: 193 ETIDPNTVFDWFH 205
+ H
Sbjct: 64 PE-LEHH--HHHH 73
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 48.6 bits (116), Expect = 4e-08
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 132 DKKRIVAILPYTKMPDTDELTFQKGDIFFVH----NELGDGWLWVTAHRTGEQGMIFRDL 187
+ + + I PYT + DEL GD F+ +GW++ T+ TG G++ +
Sbjct: 15 NHETLQVIYPYTPQ-NDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENY 73
Query: 188 VEDLDET 194
+ DE
Sbjct: 74 ITKADEC 80
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 51.4 bits (122), Expect = 6e-08
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 1 SFLVRPS-DNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQI 58
+FLVR + GDY+L + +I + +Y TF + +IN YR E +
Sbjct: 33 TFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESL 92
Query: 59 VEGH-----TLGFPVTRIN 72
+ + L +PV++
Sbjct: 93 AQYNPKLDVKLLYPVSKYQ 111
Score = 39.4 bits (91), Expect = 7e-04
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 82 FRVTAVCGDFYIGGR-QFDSLSDLISYYSSCSDLLKRE----RLAHPCPPPEPV 130
++ G + F S+ +LI++Y + S +L +P +
Sbjct: 60 IKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
Score = 38.7 bits (89), Expect = 0.001
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM--GGRTFECL 46
+FLVR S + G Y+ ++ +++ I K A Y + L
Sbjct: 324 TFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSL 370
Score = 30.2 bits (67), Expect = 0.52
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 117 RERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHR 176
+ + + R + + PD +L + + G +
Sbjct: 218 IDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWL 277
Query: 177 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDS 232
G + + + + DE + + W +N A ++L G + F + ES
Sbjct: 278 -GNENTEDQYSLVEDDEDLPHHDEKTWNVGSSNRNKAENLL--RGKRDGTFLVRESSK 332
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 51.4 bits (123), Expect = 7e-08
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 116 KRERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAH 175
+ + P VA+ Y +L+F+KG+ + N W +
Sbjct: 68 SSDTVTSPQRAGPLAGGVTTFVALYDYESR-TETDLSFKKGERLQIVNNTEGDWWLAHSL 126
Query: 176 RTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAG--PVNFTISESDST 233
TG+ G I + V D +W+ + T+ ++ +L+ A F + ES++T
Sbjct: 127 STGQTGYIPSNYVAP----SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 182
Score = 49.1 bits (117), Expect = 4e-07
Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 51/133 (38%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR S+ + G Y L +V + + Y+ ++
Sbjct: 173 TFLVRESETTKGAYCL----------------SVSDFDNAK-----GLNVKHYKIRKLDS 211
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYI-GGRQFDSLSDLISYYSSCSDLLKRER 119
G FYI QF+SL L++YYS +D L R
Sbjct: 212 GG----------------------------FYITSRTQFNSLQQLVAYYSKHADGLCH-R 242
Query: 120 LAHPCPPPEPVND 132
L CP +P
Sbjct: 243 LTTVCPTSKPQTQ 255
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 48.1 bits (115), Expect = 9e-08
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINRYRKEQI 58
+FLVR S G Y+ ++ +++ I K A + + L ++ Y+ +
Sbjct: 33 TFLVRESSK-QGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSL 91
Query: 59 VEG-----HTLGFPVTR 70
V+ TL +PV
Sbjct: 92 VQHNDSLNVTLAYPVYA 108
Score = 41.5 bits (98), Expect = 2e-05
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 89 GDFYIGGRQ-FDSLSDLISYYSSCSDLLKRE----RLAHPCPPPEP 129
G + + SL +L+ +Y S + + LA+P +
Sbjct: 66 GYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQQR 111
Score = 26.9 bits (60), Expect = 3.2
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 9/34 (26%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVNFTISESDSTFL 235
W +N A ++L + D TFL
Sbjct: 11 TWNVGSSNRNKAENLL---------RGKRDGTFL 35
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 47.4 bits (113), Expect = 9e-08
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ VA+ Y +L+F KG+ F + W + TGE G I
Sbjct: 4 SGVTLFVALYDYNAT-RWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYI 55
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 49.9 bits (119), Expect = 9e-08
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGR-----TFECLDAVINRYRK 55
+FL+R S +S+ F ++ RIE+ + + ++ Y+
Sbjct: 57 TFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKD 116
Query: 56 EQIVEGHT--LGFPVTR 70
L P+ R
Sbjct: 117 PSACMFFEPLLSTPLIR 133
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 49.1 bits (117), Expect = 1e-07
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINR 52
+FL+R S +S ++ + RIE + ++ + + F+ + +I+
Sbjct: 40 TFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDY 99
Query: 53 YRKEQIVEGHTLGFPVTR 70
Y + + P
Sbjct: 100 YVQMCKDKRTGPEAPRNG 117
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 48.6 bits (116), Expect = 1e-07
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY----LMGGRTFECLDAVINRYRKE 56
SFLVR S + SL F + + RIE R+ + +I +
Sbjct: 47 SFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGD 106
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 47.1 bits (112), Expect = 1e-07
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
++ E ++ +VA+ Y + ++L+FQKGD V E G+ W + T ++
Sbjct: 13 SNTPGIREAGSEDIIVVALYDYEAIHH-EDLSFQKGDQMVVLEESGEWW-KARSLATRKE 70
Query: 181 GMI 183
G I
Sbjct: 71 GYI 73
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
ND VA+ + D + L+ KG+ V +G W A QG +
Sbjct: 3 NDPNLFVALYDFVASGD-NTLSITKGEKLRVLGYNHNGE-WCEAQTKNGQGWV 53
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 46.4 bits (111), Expect = 1e-07
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 132 DKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWV-TAHRTGEQGM 182
+ + A+ Y+ D DE++F+ GD + DGW T RTG GM
Sbjct: 5 NLRTYRAMYDYSAQ-DEDEVSFRDGDYIVNVQPIDDGW-MYGTVQRTGRTGM 54
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 46.1 bits (110), Expect = 2e-07
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 193
+ + A+ Y +DELTF +G + ++ GW W + T Q + VED+
Sbjct: 8 RTVKALYDYKA-KRSDELTFCRGALIHNVSKEPGGW-WKGDYGTRIQQYFPSNYVEDISG 65
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 49.8 bits (119), Expect = 2e-07
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID 196
VA+ Y + +L+F+KG+ + N W + TG+ G I + V D
Sbjct: 6 VALYDYESRTE-TDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP----SD 60
Query: 197 PNTVFDWFHPECTKNDAVDMLVKAGPVN--FTISESDST 233
+W+ + T+ ++ +L+ A F + ES++T
Sbjct: 61 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 99
Score = 44.4 bits (105), Expect = 1e-05
Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 51/133 (38%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FLVR S+ + G Y L +V + + Y+ ++
Sbjct: 90 TFLVRESETTKGAYCL----------------SVSDFDNAK-----GLNVKHYKIRKLDS 128
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYI-GGRQFDSLSDLISYYSSCSDLLKRER 119
G FYI QF+SL L++YYS +D L R
Sbjct: 129 GG----------------------------FYITSRTQFNSLQQLVAYYSKHADGLCH-R 159
Query: 120 LAHPCPPPEPVND 132
L CP +P
Sbjct: 160 LTTVCPTSKPQTQ 172
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 46.2 bits (110), Expect = 3e-07
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGD-GWLWVTAHRTGEQGMI 183
P + + +T+ P EL F+KGD+ + + W V H +G++G++
Sbjct: 9 MPTRRWAPGTQCITKCEHTR-PKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLL 67
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 48.1 bits (114), Expect = 3e-07
Identities = 16/122 (13%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINR 52
+FL+R S + ++L + + RI+ + + + F+C+ +++
Sbjct: 46 TFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHH 105
Query: 53 YRKEQIVEGHT--LGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSS 110
Y + P + + + Y GG + + ++S S
Sbjct: 106 YMPPPGTPSFSLPPTEPSSEVPEQPPAQALPGSTPKRAYYIYSGGEK---IPLVLSRPLS 162
Query: 111 CS 112
+
Sbjct: 163 SN 164
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 49.3 bits (117), Expect = 3e-07
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY--LMGGRTFECLDAVINRYRKEQI 58
+FL+R S G Y+ ++ + I + A + + L ++ Y+ +
Sbjct: 217 TFLIRESSQ-RGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASL 275
Query: 59 VEG-----HTLGFPVTR 70
V+ TL PV
Sbjct: 276 VQHNDALTVTLAHPVRA 292
Score = 43.1 bits (101), Expect = 3e-05
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRE----RLAHPCPPPEP 129
G + + SL +L+ +Y S + + LAHP P P
Sbjct: 250 GFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGP 295
Score = 35.0 bits (80), Expect = 0.012
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 24/126 (19%)
Query: 116 KRERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDG------W 169
R +L N R + + PD +L + + G W
Sbjct: 112 SRTKLEQDLRAQASDN---REIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEW 168
Query: 170 LWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISE 229
L + + ++ + E W+ + + A +ML +
Sbjct: 169 LGIKNETEDQYSLMEDEDALPHHEE------RTWYVGKINRTQAEEML---------SGK 213
Query: 230 SDSTFL 235
D TFL
Sbjct: 214 RDGTFL 219
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 45.3 bits (108), Expect = 3e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ VAI Y D +L+F +G+ + + W W R G G I
Sbjct: 8 EEFVAIADYAAT-DETQLSFLRGEKILILRQTTADW-W-WGERAGCCGYI 54
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 44.7 bits (106), Expect = 6e-07
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW---LWVTAHRTGEQG 181
+ + + V + + D +EL+F+ GD+F V + W L A QG
Sbjct: 2 VSRDQAHLGPKYVGLWDFKSRTD-EELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQG 60
Query: 182 MI 183
+
Sbjct: 61 YV 62
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 45.1 bits (107), Expect = 6e-07
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
P ++ ++A+ Y D EL ++ + + + + W W R G +G +
Sbjct: 11 RRPLWEPEETVVIALYDYQTN-DPQELALRRNEEYCLLDSSEIHW-WRVQDRNGHEGYV 67
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 44.6 bits (106), Expect = 7e-07
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+A + +L F KGD+ + D + ++ G +G+I
Sbjct: 3 AIQASWPSGTECIAKYNFHG-TAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGII 60
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 45.2 bits (107), Expect = 7e-07
Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMP-DTDELTFQKGDIFFVHNELGDGWLW 171
P P N AI D L + GDI V +G W
Sbjct: 6 SGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQ-W 54
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 44.2 bits (105), Expect = 1e-06
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
++ K++VA+ Y M + ++L +KGD +F+ E W W + G++G I
Sbjct: 2 SMSTSELKKVVALYDYMPM-NANDLQLRKGDEYFILEESNLPW-WRARDKNGQEGYI 56
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 44.9 bits (106), Expect = 1e-06
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 121 AHPCPPPEPVNDK-KRIVAILPYTKMPDT-----DELTFQKGDIFFVHNELGDGWLWVTA 174
+ + K VA Y EL G +V+ ++ + +
Sbjct: 4 GSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGE 63
Query: 175 HRTGEQGMIFRDLVEDLDET 194
G++G++ + V+ + +
Sbjct: 64 LLDGQRGLVPSNFVDFVQDN 83
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 46.1 bits (109), Expect = 1e-06
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGG--------RTFECLDAVINR 52
+FL+R S + ++L + + RI+ + + + F+ + +++
Sbjct: 57 TFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHH 116
Query: 53 YRKEQIVE 60
Y Q +
Sbjct: 117 YMPPQALP 124
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPC 124
Y+ FDS+ LI Y+ S + RL HP
Sbjct: 74 NKLYLAENYCFDSIPKLIHYHQHNSAGMIT-RLRHPV 109
Score = 43.8 bits (104), Expect = 3e-06
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 1 SFLVRPSDNSPGDYSL------FFHINNQIQRFRIEKKAVR--YLMGGRTFECLDAVINR 52
+F+VR S G Y++ ++ + + A YL F+ + +I+
Sbjct: 35 AFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHY 93
Query: 53 YRKEQIVEGHTLGFPVT 69
++ L PV+
Sbjct: 94 HQHNSAGMITRLRHPVS 110
Score = 25.7 bits (57), Expect = 8.4
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 201 FDWFHPECTKNDAVDMLVKAGPV-NFTISESDST 233
+DWF +++ + +L + G F + S
Sbjct: 11 YDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV 44
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 43.9 bits (104), Expect = 1e-06
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
PP P + +++VAI YTK DEL+FQ+G I +V + DGW +
Sbjct: 9 PPWAPRSYLEKVVAIYDYTKD-KEDELSFQEGAIIYVIKKNDDGW-Y 53
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 44.3 bits (105), Expect = 1e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 132 DKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
+ +VA+ Y D+L+FQKGD V E G+ W + T ++G I + V
Sbjct: 2 EDIIVVALYDYVSWSP-DDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYV--- 56
Query: 192 DETIDPNTVFDWFHPECTKNDAVDML 217
+D + A M
Sbjct: 57 -ARVDSGGGTSGGGRH-RRRQAERMS 80
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 46.1 bits (109), Expect = 2e-06
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
P PE + + AI Y K E+ GD+ V + GW + ++G
Sbjct: 2 PLGSPEFI-ILQTYRAIADYEKT-SGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGW 57
Query: 183 IFRDLVEDLDETIDPNTVFDWFHPECTK 210
I +E LD + + E
Sbjct: 58 IPASFLEPLDSPDETEDPEPNYAGEPYV 85
Score = 42.3 bits (99), Expect = 4e-05
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 115 LKRERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTA 174
L+ PEP + VAI YT + DE++ +G+ V ++L DGW +
Sbjct: 63 LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEG-DEVSLLEGEAVEVIHKLLDGWWVIRK 121
Query: 175 HRTGEQGMIFRDLVEDLDETIDP 197
G ++ + +
Sbjct: 122 D--DVTGYFPSMYLQKSGQDVSQ 142
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 43.4 bits (103), Expect = 2e-06
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
+ A+ YT + DEL GDI V E DGW W T R G++G
Sbjct: 8 AQEYRALYDYTAQ-NPDELDLSAGDILEVILEGEDGW-W-TVERNGQRGF 54
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 43.4 bits (103), Expect = 2e-06
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
P +VA+ PY + D+L+F+KG+ V E G+ W + T ++G I
Sbjct: 3 PEEQGDIVVALYPYDGI-HPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFI 55
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 147 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMI 183
D DE+T GD + G GW + TGE G++
Sbjct: 14 DDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLV 51
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 44.1 bits (104), Expect = 2e-06
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 122 HPCPPPEPVNDKKRIVAILPYT-------KMPDTDELTFQKGDIFFVHNELGDGWLWVTA 174
P + VA+ Y +EL F++G I V+ + +
Sbjct: 6 SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG-FYRG 64
Query: 175 HRTGEQGMIFRDLVEDLD 192
G+I ++V ++
Sbjct: 65 ETCARLGLIPCNMVSEIQ 82
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 43.1 bits (102), Expect = 3e-06
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 122 HPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQG 181
++ ++A+ Y D EL + + +++ + W W + G +G
Sbjct: 9 EDNRRSFQEPEETLVIALYDYQTN-DPQELALRCDEEYYLLDSSEIHW-WRVQDKNGHEG 66
Query: 182 MI 183
Sbjct: 67 YA 68
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 42.7 bits (101), Expect = 4e-06
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
++ V + Y K + EL+ Q G++ V + GW W + EQG + +E +
Sbjct: 8 LEQYVVVSNYKKQ-ENSELSLQAGEVVDVIEKNESGW-W-FVSTSEEQGWVPATYLEAQN 64
Query: 193 ET 194
Sbjct: 65 SG 66
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 42.6 bits (101), Expect = 4e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ + + +EL G+I FV + D W V G++G++
Sbjct: 8 EAHRVLFGFVPE-TKEELQVMPGNIVFVLKKGNDNWATVM--FNGQKGLV 54
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 42.4 bits (100), Expect = 4e-06
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
A + K+ ++A+ Y + E+T +KGDI + N W W
Sbjct: 9 AAYVKKLDSGTGKELVLALYDYQEK-SPREVTMKKGDILTLLNSTNKDW-W 57
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 43.2 bits (102), Expect = 4e-06
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
++R Y + DEL + GDI V E+ +GW W G+ GM
Sbjct: 10 TNKRGERRRRRCQVAFSYLPQ-NDDELELKVGDIIEVVGEVEEGW-WEGVLN-GKTGMFP 66
Query: 185 RDLVEDLDETIDPNTV 200
+ +++L D +
Sbjct: 67 SNFIKELSGESDELGI 82
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 42.2 bits (100), Expect = 5e-06
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ +VA+ + + +L ++G + + + W W + G +G I
Sbjct: 3 EIVVAMYDFQAT-EAHDLRLERGQEYIILEKNDLHW-WRARDKYGSEGYI 50
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 43.7 bits (103), Expect = 5e-06
Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 37/124 (29%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
+FL+R S + G Y L + + K + ++ ++ + E +
Sbjct: 43 AFLIRDSHSFQGAYGLALKVATPPPSAQPWKG-----------DPVEQLVRHFLIETGPK 91
Query: 61 GHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERL 120
G + + F SLS L+S +S L L
Sbjct: 92 GVKIKGCPSE-------------------------PYFGSLSALVSQHSISPISLPC-CL 125
Query: 121 AHPC 124
P
Sbjct: 126 RIPS 129
Score = 29.9 bits (67), Expect = 0.30
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 202 DWFHPECTKNDAVDMLVKAGPVNFTISESDST 233
W+ P +++ A+ +L P F I +S S
Sbjct: 21 FWYKPHLSRDQAIALLKDKDPGAFLIRDSHSF 52
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 42.4 bits (100), Expect = 6e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
H K+ ++A+ Y + E+T +KGDI + N W W Q
Sbjct: 5 HHHHHHGSDETGKELVLALYDYQEKSP-REVTMKKGDILTLLNSTNKDW-W-KVEVNDRQ 61
Query: 181 GMI 183
G +
Sbjct: 62 GFV 64
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 41.9 bits (99), Expect = 6e-06
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+++ V + PYT DE+ F+KG V + +GW W G++G
Sbjct: 8 EEKYVTVQPYTSQ-SKDEIGFEKGVTVEVIRKNLEGW-W-YIRYLGKEGWA 55
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 45.6 bits (108), Expect = 6e-06
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQ 57
SFL RPS ++PGD +L N + +I+ Y L GG F L ++ Y +
Sbjct: 28 SFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHH 85
Score = 44.1 bits (104), Expect = 2e-05
Identities = 37/168 (22%), Positives = 57/168 (33%), Gaps = 42/168 (25%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLM-----------GGRTFECLDAV 49
SFLVR S + PGD+ L + K V ++M GG F+ L +
Sbjct: 134 SFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDL 193
Query: 50 INRYRKEQIVEGHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYS 109
+ Y+K +VE TLG + + I + +S +S +
Sbjct: 194 VEHYKKNPMVE--TLGTV-------LQLKQP-------LNTTRINAAEIESRVRELSKLA 237
Query: 110 SCSDLLKR------ERLAHPCPPPE--------PVNDKK-RIVAILPY 142
+D +K+ E L N K R ILP+
Sbjct: 238 ETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPF 285
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 42.4 bits (100), Expect = 7e-06
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ P + Y DEL+ KG V + DGW W
Sbjct: 5 SSGDPGERLYDLNMPAYVKFNYMAE-REDELSLIKGTKVIVMEKCSDGW-W 53
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 44.9 bits (107), Expect = 8e-06
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVINRYRKEQIVE 60
FLVR S +Y L + + F I+ Y + G F + +I+ Q
Sbjct: 34 DFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPL 92
Query: 61 GHTLGFPVTR 70
G + R
Sbjct: 93 TKKSGVVLHR 102
Score = 37.6 bits (88), Expect = 0.002
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 82 FRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEP 129
F + ++ + + G F S+ LI + S L + + P
Sbjct: 59 FIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTK-KSGVVLHRAVP 105
Score = 29.9 bits (68), Expect = 0.74
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 187 LVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDS 232
++ ++ + + W+H + + ++LV +G +F + ES
Sbjct: 2 MIPEVQKPLHE---QLWYHGAIPRAEVAELLVHSG--DFLVRESQG 42
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 41.4 bits (98), Expect = 8e-06
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 193
+ + A+ + D ++L F+KGDI + ++ + W W G++GMI VE
Sbjct: 4 EYVRALFDFNGN-DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVEKYHH 61
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 41.7 bits (98), Expect = 9e-06
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ Y K+ E++F G V + GW +V +G
Sbjct: 12 MTCSAYQKV-QDSEISFPAGVEVQVLEKQESGWWYVR--FGELEGWA 55
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 41.5 bits (98), Expect = 9e-06
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 183
KKR + + DELT + GD ++ ++ W +G+ G++
Sbjct: 6 KKRGIVQYDFMAESQ-DELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLV 56
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 41.7 bits (98), Expect = 1e-05
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
+ ++ ++A YT D EL +K + ++ ++ W W + G
Sbjct: 21 SLVKNLHMTEEVIVIAKWDYTAQQD-QELDIKKNERLWLLDD-SKTW-WRVRNAANRTGY 77
Query: 183 I 183
+
Sbjct: 78 V 78
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 41.1 bits (97), Expect = 1e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ K + + +T + +EL+ K ++ V + G W W R+G+ G +
Sbjct: 5 SSGKYVKILYDFTAR-NANELSVLKDEVLEVLED-GRQW-WKLRSRSGQAGYV 54
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 41.4 bits (97), Expect = 1e-05
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDPNTVFDWFHP 206
E+T +KGDI + N W V + QG + V+ LD V +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLDSGTGKELVLALYDY 61
Query: 207 ECTKNDA 213
+ + ++A
Sbjct: 62 QESGDNA 68
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 40.7 bits (96), Expect = 1e-05
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 132 DKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
++A+ Y +L F+KG+ + + G+ W + TG++G I
Sbjct: 5 QDNLVIALHSYEP-SHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFI 54
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 41.7 bits (98), Expect = 1e-05
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
PP V + VA + EL+F+KG+ + ++ + W TG QG+
Sbjct: 9 PPTYQVLEYGEAVAQYTFKGD-LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGI 65
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 41.1 bits (97), Expect = 2e-05
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
P P D+ A+ + + EL F++GD+ + N++ + W
Sbjct: 5 PEFMPPLDQPSCKALYDFEPE-NDGELGFREGDLITLTNQIDENW 48
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 40.8 bits (96), Expect = 2e-05
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
V+ +VA+ YT +DELT +GDI V + + W W + G++G
Sbjct: 2 QVDTAPTVVALYDYTAN-RSDELTIHRGDIIRVFFKDNEDW-WYGSIGKGQEGYF 54
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein
tyrosine phosphatase, SHP-1, signaling, hydrolase;
2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 44.5 bits (105), Expect = 2e-05
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
SFL RPS + GD+SL + +Q+ RI+ Y L GG F L ++ Y ++Q V
Sbjct: 26 SFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGV 85
Query: 60 EGHTLGFPVT 69
G +
Sbjct: 86 LQDRDGTIIH 95
Score = 28.7 bits (64), Expect = 2.1
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 13/153 (8%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKA----VRYLMG-GRT--FECLDAVINRY 53
+FLVR S + PGD+ L + + V G E D++ +
Sbjct: 132 TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV 191
Query: 54 RKEQIVEGHTLGFPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSD 113
+ + L + + ++ +S + + +
Sbjct: 192 EHFKKT--GIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFE 249
Query: 114 LLKRERLAHPCPPPE---PVNDKK-RIVAILPY 142
L+++ + + E P N K R ILP+
Sbjct: 250 SLQKQEVKNLHQRLEGQRPENKGKNRYKNILPF 282
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 44.2 bits (104), Expect = 2e-05
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRY-LMGGRTFECLDAVINRYRKEQIV 59
SFL RPS + GD+SL + +Q+ RI+ Y L GG F L ++ Y ++Q V
Sbjct: 26 SFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGV 85
Query: 60 EGHTLGFPVT 69
G +
Sbjct: 86 LQDRDGTIIH 95
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 40.9 bits (96), Expect = 2e-05
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW---VTAHRTGEQG 181
N K V+I Y D + FQ+G V +GW W + +G
Sbjct: 2 SSGSSGNLKDVYVSIADYEG--DEETAGFQEGVSMEVLERNPNGW-WYCQILDGVKPFKG 58
Query: 182 MI 183
+
Sbjct: 59 WV 60
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 40.3 bits (95), Expect = 2e-05
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
++ + + ELT +G+ V + W V + G G I
Sbjct: 8 LKMQVLYEFEARNP-RELTVVQGEKLEVLDHSKRWW-LVK-NEAGRSGYI 54
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 40.4 bits (95), Expect = 2e-05
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 183
+ + + P +ELT +G+I V N +G GWL ++ GEQG++
Sbjct: 3 SGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLV 59
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 183
+R + + DELT + GD ++ ++ W +G+ G++
Sbjct: 2 MERGIVQYDFMAESQ-DELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLV 52
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
D ++L F+KGDI + ++ + W W G++GMI
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMI 49
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 40.0 bits (94), Expect = 3e-05
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ + + A + + + DEL+ KGDI +V GW W
Sbjct: 2 SSGSSGSHQLIVKARFNFKQT-NEDELSVCKGDIIYVTRVEEGGW-W 46
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 40.1 bits (94), Expect = 4e-05
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
Y +++L+ G + + + GW W
Sbjct: 11 QVTSAYVAS-GSEQLSLAPGQLILILKKNTSGW-W 43
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 40.5 bits (95), Expect = 5e-05
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWV--TAHRTGEQGMI---FRDLVEDLDETIDPNTV 200
DELT G+ F+ W ++ R G G++ F +++ N V
Sbjct: 20 DELTTYVGENLFICAHHNCEW-FIAKPIGRLGGPGLVPVGFVSIIDIATGYATGNDV 75
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 39.8 bits (93), Expect = 5e-05
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
++ A+ + + D L + GD+ V + DG W
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGR-W 55
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 41.0 bits (96), Expect = 5e-05
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 1 SFLVRPSDNSPGD--YSLFFHINNQIQ--RFRIEKKAVRYLMG-----GRTFECLDAVIN 51
SFL+R S Y+L N ++ R + +Y +G F + ++N
Sbjct: 47 SFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVN 106
Query: 52 RYRKEQIVEGHTLGFPVTRINL 73
++ +V + L
Sbjct: 107 SHQHNPLVLIDSQNNTKDSTRL 128
Score = 26.8 bits (59), Expect = 4.6
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 177 TGEQGMIFRDLVEDLDETIDPNTVFDWFHPECTKNDAVDMLVKAGPVNFTISESDSTFL 235
+G G + E + W+ C + A + L ++ D +FL
Sbjct: 3 SGSSGPFNSTFADQEAELLG----KPWYAGACDRKSAEEALHRSNK--------DGSFL 49
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 42.5 bits (99), Expect = 5e-05
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETID 196
+AI + DE+ + GDI V DG+ + G G+ V + ET+
Sbjct: 446 IAIYAHQPR-TADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK 504
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 39.7 bits (93), Expect = 5e-05
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
K+ ++A+ Y + E+T +KGDI + N W W QG + V+ LD
Sbjct: 2 KELVLALYDYQEK-SPREVTMKKGDILTLLNSTNKDW-W-KVEVNDRQGFVPAAYVKKLD 58
Query: 193 ET 194
Sbjct: 59 PA 60
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 39.7 bits (93), Expect = 6e-05
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ +++ A+ + + D +ELTF+ G+I V ++ W W
Sbjct: 5 SSGSEIQLNNKVARKVRALYDFEAVED-NELTFKHGEIIIVLDDSDANW-W 53
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 39.3 bits (92), Expect = 6e-05
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ R+ + DTD L +KGDI + ++ G W
Sbjct: 3 SGSSGFCGRARVHTDFTPSPY-DTDSLKLKKGDIIDIISKPPMGT-W 47
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 39.3 bits (92), Expect = 8e-05
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
P K A+ Y DT L F++ DI + + + ++ G++G
Sbjct: 2 GPLGSPEFAKYARALKDYNVS-DTSLLPFKRNDIITITFKDQENKWFMGQLN-GKEGSFP 59
Query: 185 RDLVEDLDETIDP 197
D VE L + P
Sbjct: 60 VDHVEILLSDVPP 72
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 38.9 bits (91), Expect = 8e-05
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGMI 183
N + Y DELT ++ ++ V + + W ++ G+ G +
Sbjct: 5 SSGTLRNYPLTCKVVYSYKAS-QPDELTIEEHEVLEVIEDGDMEDW-VKARNKVGQVGYV 62
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 39.4 bits (92), Expect = 9e-05
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGD--GWLWVTAHRTGEQ 180
+ + + P++ + + +EL F+KG+ V + + W W + G+
Sbjct: 7 GLSNGQGSRVLHVVQTLYPFSSVTE-EELNFEKGETMEVIEKPENDPEW-WKCKNARGQV 64
Query: 181 GMI 183
G++
Sbjct: 65 GLV 67
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 38.9 bits (91), Expect = 9e-05
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 134 KRIVAILPYT------KMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDL 187
+R+VA+ Y + ELTF GDI V E+ + + G++G++ +
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELN-GQKGLVPSNF 66
Query: 188 VEDL 191
+E++
Sbjct: 67 LEEV 70
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 38.4 bits (90), Expect = 9e-05
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 126 PPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
P + +A+ Y DE++F DI + DGW W
Sbjct: 2 PLGSSDLGITAIALYDYQAA-GDDEISFDPDDIITNIEMIDDGW-W 45
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 39.2 bits (91), Expect = 9e-05
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 16/61 (26%)
Query: 138 AILPYTKMPDTDELTFQKGDIFFVHNEL---------------GDGWLWVTAHRTGEQGM 182
A+ P+ + ++L GD+ V GW+ RT ++G
Sbjct: 16 ALYPFRRE-RPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGD 74
Query: 183 I 183
Sbjct: 75 F 75
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 38.8 bits (91), Expect = 9e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
K+ ++A+ Y + E+T +KGDI + N W V + QG +
Sbjct: 5 KELVLALYDYQEK-SPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFV 52
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 39.7 bits (92), Expect = 9e-05
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFV-----HNELGDGWLW 171
P ++ A YT DTDEL + GD+ V E +GWL
Sbjct: 36 RLDLPPGFMFKVQAQHDYTAT-DTDELQLKAGDVVLVIPFQNPEEQDEGWLM 86
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 38.4 bits (90), Expect = 1e-04
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
KK + + ++ EL+ K D+ + ++ W W + +G+ G +
Sbjct: 1 KKYAKSKYDFVAR-NSSELSVMKDDVLEILDD-RRQW-WKVRNASGDSGFV 48
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 38.9 bits (91), Expect = 1e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ VA+ Y DE++F DI + DGW W
Sbjct: 9 YDEYENDLGITAVALYDYQAA-GDDEISFDPDDIITNIEMIDDGW-W 53
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 38.4 bits (90), Expect = 1e-04
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 147 DTDELTFQKGDIFFVHNE-LGDGWLWVTAHRTGEQGMI 183
++ +G+ + E GDGW + G +G +
Sbjct: 20 SEGTISMAEGEDLSLMEEDKGDGW-TRVRRKEGGEGYV 56
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
P K ++ + EL+ ++ D+ V ++ W W G++G +
Sbjct: 2 PLGSGALKWVLCNYDFQARNS-SELSVKQRDVLEVLDDSRK-W-WKVRDPAGQEGYV 55
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 39.9 bits (93), Expect = 1e-04
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAH-RTGEQGMI 183
DEL G+ + W R G G++
Sbjct: 18 DELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLV 53
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 38.4 bits (90), Expect = 1e-04
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
E++F+KG+ + ++ + W T QG+
Sbjct: 20 TQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIF 56
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 38.0 bits (89), Expect = 1e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWV-TAHRTGEQGM 182
+ +ELTF + D + D W W+ + G +G+
Sbjct: 13 EDNELTFVENDKIINIEFVDDDW-WLGELEKDGSKGL 48
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 38.1 bits (89), Expect = 1e-04
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 138 AILPYTKMP-DTDELTFQKGDIFFVHNELGDGWLW 171
AI D L + GDI V +G W
Sbjct: 6 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQ-W 39
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 41.1 bits (95), Expect = 1e-04
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 78 PSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIV 137
P + V FY + + + + +K P R
Sbjct: 122 PVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVS---PQGNSVDRMAAPRAE 178
Query: 138 AILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI---FRDLVEDLDET 194
A+ +T EL F+ GD+ F+ + + WL T G G+ F +++D E
Sbjct: 179 ALFDFTG-NSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKILKDFPEE 235
Query: 195 IDPN 198
DP
Sbjct: 236 DDPT 239
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 38.0 bits (89), Expect = 2e-04
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
N + + A + + + DEL+F KGD+ V GW W
Sbjct: 4 NSQLVVRAKFNFQQT-NEDELSFSKGDVIHVTRVEEGGW-W 42
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 38.1 bits (89), Expect = 2e-04
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVED 190
+ + A+ + DEL +KGDI +H + +GW W + G++G VE+
Sbjct: 5 SSGRLCKALYSFQAR-QDDELNLEKGDIVIIHEKKEEGW-WFGSLN-GKKGHFPAAYVEE 61
Query: 191 LDETIDPNT 199
L
Sbjct: 62 LPSNAGNTA 70
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 38.2 bits (89), Expect = 2e-04
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW--------VTAHRTGEQGMI 183
+ VA+ Y ++L+F+ GD V + +GW W T QG I
Sbjct: 8 QYFVALFDYQARTA-EDLSFRAGDKLQVLDTSHEGW-WLARHLEKKGTGLGQQLQGYI 63
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 37.7 bits (88), Expect = 2e-04
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW-------VTAHRTGEQGMI 183
K+ ++A+ Y + E+T +KGDI + N W W V QG +
Sbjct: 1 KELVLALYDYQEKSP-REVTMKKGDILTLLNSTNKDW-WKVEVKITVNGKTYERQGFV 56
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 37.6 bits (88), Expect = 2e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+R Y + DEL + GDI V E+ +GW W
Sbjct: 7 GRRCQVAFSYLPQ-NDDELELKVGDIIEVVGEVEEGW-W 43
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
++ A+ Y DELTF++GD VH + GW W
Sbjct: 5 QVKALYDYDAQ-TGDELTFKEGDTIIVHQKDPAGW-W 39
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 37.6 bits (88), Expect = 2e-04
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
++ ++A YT D EL +K + ++ ++ W W + G +
Sbjct: 2 TEEVIVIAKWDYTAQQD-QELDIKKNERLWLLDD-SKTW-WRVRNAANRTGYV 51
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 37.6 bits (88), Expect = 2e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ K++ + Y + DEL + GDI ++ E+ +GW W
Sbjct: 3 LGSKKRQCKVLFEYIPQ-NEDELELKVGDIIDINEEVEEGW-W 43
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 37.6 bits (88), Expect = 2e-04
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVED 190
K+ ++ + Y + ELT +KGDI + N W W G QG + ++
Sbjct: 4 TGKELVLVLYDYQEK-SPRELTVKKGDILTLLNSTNKDW-W-KIEVNGRQGFVPAAYLKK 60
Query: 191 LD 192
LD
Sbjct: 61 LD 62
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 37.8 bits (88), Expect = 2e-04
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 133 KKRIVAILPYTKMPDT------DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
K ++A L Y L + GD+ V+ + D + G +G++
Sbjct: 7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQG-FYYGELGGHRGLV 62
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 37.7 bits (88), Expect = 3e-04
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 118 ERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAH-R 176
++ H R A+ +T EL F+ GD+ F+ + + WL T
Sbjct: 3 HKVHHHHHHHMDRMAAPRAEALFDFTGN-SKLELNFKAGDVIFLLSRINKDWLEGTVRGA 61
Query: 177 TG 178
TG
Sbjct: 62 TG 63
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 36.8 bits (86), Expect = 3e-04
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLW 171
+ DEL+F KGD+ V GW W
Sbjct: 17 NEDELSFSKGDVIHVTRVEEGGW-W 40
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 37.3 bits (87), Expect = 3e-04
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 132 DKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
++ +VA Y + EL +K + ++ ++ W W + + G +
Sbjct: 6 EEVVVVAKFDYVAQQE-QELDIKKNERLWLLDD-SKSW-WRVRNSMNKTGFV 54
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 37.3 bits (87), Expect = 3e-04
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
N +R+ I + DELTF +G++ V E W W
Sbjct: 8 NKVRRVKTIYDCQA-DNDDELTFIEGEVIIVTGEEDQEW-W 46
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 36.8 bits (86), Expect = 3e-04
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
K + A+ Y DELTF K I + GW W
Sbjct: 3 KSAVKALFDYKAQ-REDELTFTKSAIIQNVEKQDGGW-W 39
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 37.0 bits (86), Expect = 4e-04
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 137 VAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ PY+ E+T +KGDI + N W V + QG +
Sbjct: 4 PPLPPYS--AGGREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFV 46
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 36.6 bits (85), Expect = 4e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
E+T +KGDI + N W V + QG
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGF 35
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
++ + Y + DEL + GDI ++ E+ +GW
Sbjct: 2 RQCKVLFEYIPQ-NEDELELKVGDIIDINEEVEEGW 36
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
P+ + +A Y EL+F+KG +++ + W W G G++
Sbjct: 2 PLGSPEFAIAKFDYVGR-SARELSFKKGASLLLYHRASEDW-W-EGRHNGIDGLV 53
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 39.8 bits (91), Expect = 5e-04
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 122 HPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFV-HNELGDGWLWVTAHRTGEQ 180
+P + R+ A+ Y + DEL+F+ GD +E GW G+
Sbjct: 417 NPFDDDATSGTEVRVRALYDYEG-QEHDELSFKAGDELTKMEDEDEQGW-CKGRLDNGQV 474
Query: 181 GM 182
G+
Sbjct: 475 GL 476
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 36.6 bits (85), Expect = 5e-04
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 135 RIVAILPYTKMP-DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ A+ PY D E++F++ +I V +++ W W GE G+I
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQV-SDIEGRW-WKARRANGETGII 54
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 36.5 bits (85), Expect = 5e-04
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 119 RLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
H ++ +++ AI + + +ELTF+ G+I V ++ W W
Sbjct: 3 HHHHHHSHMNHQHEARKVRAIYDFEAA-EDNELTFKAGEIITVLDDSDPNW-W 53
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 38.5 bits (89), Expect = 6e-04
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
P + ++ VAI + +L+ Q GD+ + GD + QG+
Sbjct: 9 APWRKADKERHGVAIYNFQG-SGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFP 67
Query: 185 RDLVEDLDETIDPNTVFD 202
+ + + T++ +
Sbjct: 68 KSFIHIKEVTVEKRRNTE 85
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 37.4 bits (87), Expect = 6e-04
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
+ +++A+ Y + DEL+F KG + V N+ W W G G+
Sbjct: 26 RATPAFHPVCQVIAMYDYAAN-NEDELSFSKGQLINVMNKDDPDW-W-QGEINGVTGLFP 82
Query: 185 RDLVEDLDETIDPNT 199
+ V+ ++ P++
Sbjct: 83 SNYVKMTTDSSGPSS 97
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.6 bits (85), Expect = 6e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
A+ + M EL F+ GD+ V + W W E+G
Sbjct: 12 SAEAVWDHVTM-ANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGW 56
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 36.0 bits (84), Expect = 6e-04
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
P P + A+ Y DTDEL+F DI + E GW W
Sbjct: 2 PLGSP-----QCKALYAYDAQ-DTDELSFNANDIIDIIKEDPSGW-W 41
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 36.1 bits (84), Expect = 7e-04
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
+ +A Y EL+F+KG ++ D W W G G+I
Sbjct: 7 GEPIEAIAKFDYVGR-TARELSFKKGASLLLYQRASDDW-W-EGRHNGIDGLI 56
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 36.1 bits (84), Expect = 8e-04
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 149 DELTFQKGDIFFVHNELGDGW 169
EL QKGDI +++ ++ W
Sbjct: 22 KELPLQKGDIVYIYKQIDQNW 42
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 36.2 bits (84), Expect = 8e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI 183
EL+F++GD+ +H W + G +G+I
Sbjct: 23 TAQELSFRRGDVLRLHERASSDWWRGEHN--GMRGLI 57
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm,
phosphoprotein, SH2 domain, signaling protein; HET:
PTR; 1.90A {Homo sapiens}
Length = 125
Score = 37.5 bits (87), Expect = 8e-04
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 1 SFLVRPSDNSPGDYSL---FFHINNQIQRFRIEK---KAVRYLMGGRTFECLDAVINRYR 54
+ ++RP + +YS+ +I+ +++ L T L +VI+ +
Sbjct: 39 NMILRPGSD-SRNYSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFV 97
Query: 55 KE 56
KE
Sbjct: 98 KE 99
Score = 32.5 bits (74), Expect = 0.040
Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 91 FYIGGR-QFDSLSDLISYYSSCSD-LLKRERLAHPCPPPEPVNDKKR 135
+ +L +I Y+ + L+ + + + + R
Sbjct: 78 IELEKPVTLPNLFSVIDYFVKETRGNLRPFIASTDENTGQEPSMEGR 124
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 37.4 bits (86), Expect = 9e-04
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 125 PPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
+ ++ VAI + +L+ Q GD+ + GD + QG IF
Sbjct: 51 SSGSSGDKERHGVAIYNFQGSGA-PQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQG-IF 108
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 35.6 bits (83), Expect = 9e-04
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGM 182
R+ A+ Y + DEL+F+ GD E GW +G+ G+
Sbjct: 4 VRVRALYDYDGQ-EQDELSFKAGDELTKLGEEDEQGW-CRGRLDSGQLGL 51
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 38.5 bits (88), Expect = 9e-04
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFV-----HNELGDGWLW 171
P ++ A YT DTDEL + GD+ V E +GWL
Sbjct: 132 AGRLDLPPGFMFKVQAQHDYTA-TDTDELQLKAGDVVLVIPFQNPEEQDEGWLM 184
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 35.8 bits (83), Expect = 0.001
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLW 171
D L + G++ V G W
Sbjct: 21 DKTALALEVGELVKVTKINVSGQ-W 44
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 35.7 bits (83), Expect = 0.001
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAH-RTG 178
K A+ + DEL F++GDI ++ + W T+ RTG
Sbjct: 8 KVFRALYTFEPR-TPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 52
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 36.3 bits (84), Expect = 0.001
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNE----LGDGWLWVTAHRTG 178
+D A + + D +E++F+ GD+ + + GW + +
Sbjct: 7 GTNWASGEDDHVVARAEYDFVAVSD-EEISFRAGDMLNLALKEQQPKVRGW-LLASLDGQ 64
Query: 179 EQGMI 183
G+I
Sbjct: 65 TTGLI 69
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
R A+ Y + +L F KGD+ + +L + W
Sbjct: 9 RAKALCNYRGK-NPGDLKFNKGDVILLRRQLDENW 42
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 35.7 bits (83), Expect = 0.001
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIF 184
K + A+ Y DELTF K I + GW W + G++ + F
Sbjct: 6 KCAVKALFDYKAQ-REDELTFIKSAIIQNVEKQEGGW-WRGDYG-GKKQLWF 54
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 35.8 bits (83), Expect = 0.001
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 123 PCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHN--ELGDGWLWVTAHRTGEQ 180
+ ++ ++ + Y ++ EL+ ++ V + + W R ++
Sbjct: 7 GLNDLKESSNNRKARVLYDYDAA-NSTELSLLADEVITVFSVVGMDSDW-L-MGERGNQK 63
Query: 181 GM 182
G
Sbjct: 64 GK 65
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 36.2 bits (83), Expect = 0.001
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 16/60 (26%)
Query: 138 AILPYTKMPDTDELTFQKGDIFFVH---------------NELGDGWLWVTAHRTGEQGM 182
A+ Y K +++ GDI V+ GWL TGE+G
Sbjct: 10 ALYDYKKE-REEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGD 68
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 135 RIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
+ Y + D DELT + G+I +L + W+ G +GM
Sbjct: 3 DYIVEYDYDAVHD-DELTIRVGEIIRNVKKLQEEG-WLEGELNGRRGM 48
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 36.0 bits (83), Expect = 0.001
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 120 LAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFV-----HNELGDGWLWVTA 174
++ P + + A+ + E+ +KGD+ + W W
Sbjct: 1 ISEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDW-WKVR 59
Query: 175 HRTGEQGMIFRDLVEDLDETIDPNTVFDWFHPE 207
+ G G I + +E + V D
Sbjct: 60 TKNGNIGYIPYNYIEIIKRRKKIEHVDDETRTH 92
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 126 PPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
P P ++VA PY D+L F+K V + W
Sbjct: 4 PEVP----FKVVAQFPYKS-DYEDDLNFEKDQEIIVTSVEDAEW 42
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 35.3 bits (82), Expect = 0.001
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMI---FRDLVEDLDETIDPN 198
+ EL F++GDI + N++ + W + GE G + +++ L+ +
Sbjct: 16 NQGELGFKEGDIITLTNQIDENW-YEGMIH-GESGFFPINYVEVIVPLEHHHHHH 68
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 35.8 bits (83), Expect = 0.001
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+R A+L + + D DEL F+K DI + ++ + W
Sbjct: 7 GRRAKALLDFERH-DDDELGFRKNDIITIISQKDEHC-W 43
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLW 171
DELT G+I + GW W
Sbjct: 14 HDDELTISVGEIITNIRKEDGGW-W 37
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 35.4 bits (81), Expect = 0.002
Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 6/71 (8%)
Query: 125 PPPEPVNDKKRIVAILPYTKMP-----DTDELTFQKGDIF-FVHNELGDGWLWVTAHRTG 178
++ Y +P L GDI E W T
Sbjct: 4 DKKRNELGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATN 63
Query: 179 EQGMIFRDLVE 189
E G + V
Sbjct: 64 EVGWFPCNRVH 74
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWL 170
++ A+ Y ++L FQ+GDI V +++ + WL
Sbjct: 5 GSQVEALFSYEATQP-EDLEFQEGDIILVLSKVNEEWL 41
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 35.1 bits (81), Expect = 0.002
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 120 LAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHN-----ELGDGWLWVTA 174
++ P + + A+ + E+ +KGD+ + + W W
Sbjct: 1 ISEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDW-WKVR 59
Query: 175 HRTGEQGMI 183
+ G G I
Sbjct: 60 TKNGNIGYI 68
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 147 DTDELTFQKGDIFFVHNELGDGW 169
ELT QKGDI ++H E+ W
Sbjct: 14 SPKELTLQKGDIVYIHKEVDKNW 36
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 34.5 bits (80), Expect = 0.002
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
VA+ + + ++L + GDI + + + W G
Sbjct: 7 GNTYVALYKFVPQ-ENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGF 53
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 34.9 bits (81), Expect = 0.002
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 147 DTDELTFQKGDIFFVHNELGDGW 169
+ EL F++GDI + N++ + W
Sbjct: 20 NEGELGFKEGDIITLTNQIDENW 42
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 132 DKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ K + A+ + ++ EL F++GD+ + N+ W W
Sbjct: 1 ETKFVQALFDFNPQ-ESGELAFKRGDVITLINKDDPNW-W 38
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 35.9 bits (82), Expect = 0.002
Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 1 SFLVRPSDNSPGDYSLFF----HINNQIQRFRIEKKAVRYLMGGR---TFECLDAVINRY 53
+ L+RPS + S+ + + ++ ++++++ +Y++ + LDAV+N +
Sbjct: 45 NLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYF 104
Query: 54 RKE 56
Sbjct: 105 VSH 107
Score = 26.3 bits (57), Expect = 4.7
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 82 FRVTAVCGDFYIGGRQ---FDSLSDLISYYSSCSD 113
++V + I Q SL +++Y+ S +
Sbjct: 75 YKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHTK 109
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
K A+ + DEL F++GDI ++ + W W
Sbjct: 3 VKVFRALYTFEPR-TPDELYFEEGDIIYITDMSDTNW-W 39
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 34.6 bits (80), Expect = 0.003
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHN--ELGDGWLWVTAHRTGEQGMIFRDLVEDL 191
+ + P++ + + +EL F+KG+ V E W W + G+ G++ ++ V L
Sbjct: 7 HVVQTLYPFSSVTE-EELNFEKGETMEVIEKPENDPEW-WKCKNARGQVGLVPKNYVVVL 64
Query: 192 DETIDPN 198
+ +
Sbjct: 65 SDGPALH 71
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 34.2 bits (79), Expect = 0.003
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 149 DELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGM 182
E++F+KG+ + ++ + W T QG+
Sbjct: 21 VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGI 54
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 34.2 bits (79), Expect = 0.003
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 134 KRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
+ +A+ PY+ + + +LTF +G+ V + G+ W T G+ + V+ D
Sbjct: 9 EEYIALYPYSSV-EPGDLTFTEGEEILVTQKDGE---WWTGSIGDRSGIFPSNYVKPKD 63
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 34.3 bits (79), Expect = 0.004
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFV---HNELGDGWLWVTAHRTGEQGMI 183
+ A+ + +EL+ + + G+ W A G++G +
Sbjct: 7 GSEAEGNQVYFAVYTFKARNP-NELSVSANQKLKILEFKDVTGNTE-WWLAEVNGKKGYV 64
Query: 184 FRDLVEDLD 192
+ + +
Sbjct: 65 PSNYIRKTE 73
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ +R+ A+ + + + +ELTF+ G++ V ++ W W
Sbjct: 3 HMARRVRALYDFEAV-EDNELTFKHGELITVLDDSDANW-W 41
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 147 DTDELTFQKGDIFFVHNEL-GDGWLWVTAHRTGEQGM 182
DE++ GDI V G GW + G +G+
Sbjct: 13 GDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGL 47
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 35.6 bits (82), Expect = 0.006
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 1 SFLVRPSDNSPGDYSL--------FFHIN----NQIQRFRIEKKAVRYLMGGRTFECLDA 48
F++R S ++ F H++ + + K ++ G+ + LD
Sbjct: 30 DFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKV---LVVEGQRYHDLDQ 86
Query: 49 VINRYRK 55
+I Y +
Sbjct: 87 IIVEYLQ 93
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 36.5 bits (83), Expect = 0.006
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 101 LSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTK--MPDTDELTFQKGDI 158
+ DL+ + L KR K +VA+ ++ L+F KGD+
Sbjct: 558 IRDLVVTF--LEGLRKR---------------SKYVVALQDNPNPAGEESGFLSFAKGDL 600
Query: 159 FFVHNELGD-----GWLWVTAHRTGEQGMIFRDLV 188
+ ++ G+ GW RT ++G D V
Sbjct: 601 IILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 130 VNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
+ R A+ +T EL F+ GD+ F+ + + W
Sbjct: 1 LIKHMRAEALFDFTGN-SKLELNFKAGDVIFLLSRINKDW 39
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 36.1 bits (83), Expect = 0.007
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 126 PPEPVNDKKRIV--AILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVT 173
E ++D + A+ + M D EL F+ GD+ V + W W
Sbjct: 21 INELISDGSVVCAEALWDHVTM-DDQELGFKAGDVIEVMDATNREWWWGR 69
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 35.8 bits (83), Expect = 0.009
Identities = 8/81 (9%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 89 GDFYIGGR-QFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPD 147
D F+ + ++ D+ + V++ ++P+
Sbjct: 12 YDIPTTENLYFNGMGYYHHHHHHDYDIPT-TENLYFQGMLAGVSE----------YELPE 60
Query: 148 TDELTFQKGDIFFVHNELGDG 168
+ + LG+G
Sbjct: 61 DPRWELPRDRLVLGK-PLGEG 80
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 34.3 bits (78), Expect = 0.011
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 147 DTDELTFQKGDIFFVHNELGD-GWLW 171
D EL+ ++GDI + N+ G GW W
Sbjct: 18 DRSELSLKEGDIIKILNKKGQQGW-W 42
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 33.1 bits (76), Expect = 0.011
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 126 PPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLW 171
+ + A+ +T D + L F K DI V + + W W
Sbjct: 3 SGSSGVENLKAQALCSWTAKKD-NHLNFSKHDIITVLEQQ-ENW-W 45
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 32.5 bits (75), Expect = 0.013
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLW 171
+ DEL F+ G++ V + W W
Sbjct: 14 EEDELGFRSGEVVEVLDSSNPSW-W 37
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 32.9 bits (75), Expect = 0.015
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 106 SYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNEL 165
++ S L E L P A+ Y +ELT ++GD V ++
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGTTPA--GPVWTAVFDYEAA-GDEELTLRRGDRVQVLSQD 60
Query: 166 G-----DGWLWVTAHRTGEQGM 182
+GW W +G G+
Sbjct: 61 CAVSGDEGW-WTGQLPSGRVGV 81
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 32.3 bits (74), Expect = 0.017
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 127 PEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNE--LGDGWLW 171
K I PY + DELT ++GDI + N+ + GW W
Sbjct: 3 DSRTKSKDYCKVIFPYEAQ-NDDELTIKEGDIVTLINKDCIDVGW-W 47
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 32.8 bits (75), Expect = 0.018
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 147 DTDELTFQKGDIFFVHNELG--DGWL 170
+ DE++F GDI V + GWL
Sbjct: 18 NHDEMSFNSGDIIQVDEKTVGEPGWL 43
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 31.7 bits (72), Expect = 0.019
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDE 193
DEL+ G V DGW W G+ G + V + +
Sbjct: 14 REDELSLVXGSRVTVMEXCSDGW-W-RGSYNGQIGWFPSNYVLEEVD 58
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.4 bits (74), Expect = 0.019
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 121 AHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQ 180
+ +N + A+ + +L FQ GD V ++ + W G+
Sbjct: 5 SSGHERVGNLNQPIEVTALYSFEGQ-QPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQT 63
Query: 181 GMIF 184
G IF
Sbjct: 64 G-IF 66
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 31.8 bits (73), Expect = 0.021
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNE--LGDGWLW 171
K+ + PYT + DELTF++G+I + ++ GW W
Sbjct: 6 KEYCRTLFPYTGT-NEDELTFREGEIIHLISKETGEAGW-W 44
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 31.8 bits (73), Expect = 0.022
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLW 171
+ EL F++GD V + W W
Sbjct: 15 EDGELGFRRGDFIHVMDNSDPNW-W 38
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 31.8 bits (73), Expect = 0.023
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFF-VHNELGDGWL 170
EL+F G +F VH GWL
Sbjct: 23 HDSELSFTAGTVFDNVHPSQEPGWL 47
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 31.4 bits (72), Expect = 0.025
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 147 DTDELTFQKGDIFFVHNELGDGWLW 171
+L + GD + +L W +
Sbjct: 15 QDGDLGLKPGDKVQLLEKLSPEW-Y 38
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 31.9 bits (72), Expect = 0.030
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 135 RIVAILPYTKMP-----DTDELTFQKGDIFFV-HNELGDGWLWVTAHRTGEQGMIFRDLV 188
++ Y +P L GDI + E W T E G + V
Sbjct: 6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65
Query: 189 E 189
Sbjct: 66 H 66
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 31.5 bits (72), Expect = 0.033
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 149 DELTFQKGDIFFVHNELGD-GW 169
DEL+F++GDI V NE D W
Sbjct: 24 DELSFKRGDILKVLNEECDQNW 45
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 31.5 bits (72), Expect = 0.039
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 147 DTDELTFQKGDIFFVHNELG--DGWLW 171
D EL+ ++GD+ +++ +G GW W
Sbjct: 20 DMRELSLREGDVVRIYSRIGGDQGW-W 45
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 31.1 bits (71), Expect = 0.046
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 147 DTDELTFQKGDIFFVHN---ELGDGWLW 171
DEL+F +G I + N + DG+ W
Sbjct: 21 TDDELSFPEGAIIRILNKENQDDDGF-W 47
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 31.1 bits (71), Expect = 0.046
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 147 DTDELTFQKGDIFFVHNELG---DGWLWVTAHRTGEQGM 182
+DEL F +GDI + + +GW H G QG+
Sbjct: 20 CSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGL 56
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 31.9 bits (72), Expect = 0.047
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 10/84 (11%)
Query: 124 CPPPEPVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW--LW-------VTA 174
C E + VA+ Y PD LT +G + +V ++L W
Sbjct: 13 CADQECSHPISMAVALQDYMA-PDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYG 71
Query: 175 HRTGEQGMIFRDLVEDLDETIDPN 198
G +V +
Sbjct: 72 DLAARLGYFPSSIVREDQTLKPGK 95
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 30.7 bits (70), Expect = 0.055
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 147 DTDELTFQKGDIFFVHN---ELGDGWLWVTAH-RTG 178
DEL+F+KGDI V + DGW + H R G
Sbjct: 16 SPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQG 51
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 31.7 bits (71), Expect = 0.076
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 1 SFLVRPSDNSPGDY-SLFFHINNQIQRFRI-EKKAVRYLMGGRTFECLDAVINRYRKEQI 58
+ +R S G ++ +N+++ +RI EK + YL G F + +++ Y +
Sbjct: 46 LYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVL 105
Query: 59 VEGHTL 64
+L
Sbjct: 106 PSHQSL 111
Score = 27.0 bits (59), Expect = 2.7
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 82 FRVTAVCGDFYI-GGRQFDSLSDLISYYSS 110
+R+ FY+ G F S+ ++ +Y +
Sbjct: 73 YRIFEKDSKFYLEGEVLFVSVGSMVEHYHT 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.078
Identities = 29/228 (12%), Positives = 58/228 (25%), Gaps = 82/228 (35%)
Query: 20 INNQIQRFRIEKKAVRYLMG--GRTFECLDAVINRYRKEQIVEGHTLGFPVTRINLG-IF 76
+ + R K + + G+T + ++ ++ + F + +NL
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKT--WV--ALDVCLSYKVQC--KMDFKIFWLNLKNCN 193
Query: 77 IPSAIFRVTAVCGDFYIGGRQFDSLSDLISYYSSCSDLLKRERLAHPCPPPEPVND---- 132
P + + L L Y + R H ++
Sbjct: 194 SPETV----------------LEMLQKL--LYQIDPNWT--SRSDHSSNIKLRIHSIQAE 233
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLD 192
+R++ PY N L LV L
Sbjct: 234 LRRLLKSKPYE-------------------NCL---------------------LV--LL 251
Query: 193 ETIDPNTVFDWFHPEC-----TKNDAV-DMLVKAGPVNFTISESDSTF 234
+ ++ F+ C T+ V D L A + ++ T
Sbjct: 252 NVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Score = 29.4 bits (65), Expect = 1.3
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 177 TGEQGMIFRDLVEDLDETI----DPNTVFDWFHPECTKNDAVDMLVKAGP 222
TGE ++D++ ++ D V D +K + +D ++ +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKD 59
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 30.9 bits (70), Expect = 0.080
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFVHN--ELGDGWLW 171
+ ++A+ Y + L+F +GD+ + L GW +
Sbjct: 4 GSSGSGYVIALRSYITD-NCSLLSFHRGDLIKLLPVATLEPGWQF 47
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 29.9 bits (68), Expect = 0.13
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 133 KKRIVAILPYTKMPDTDELTFQKGDIFFVHNE--LGDGWLW 171
I PY + DELT ++GDI + N+ + GW W
Sbjct: 7 GDYCKVIFPYEAQ-NDDELTIKEGDIVTLINKDCIDVGW-W 45
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 29.5 bits (67), Expect = 0.16
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 147 DTDELTFQKGDIFFVHNE--LGDGWLW 171
+ DELT ++GDI + N+ + GW W
Sbjct: 15 NDDELTIKEGDIVTLINKDCIDVGW-W 40
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 29.7 bits (67), Expect = 0.16
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 129 PVNDKKRIVAILPYTKMPDTDELTFQKGDIFFV-----HNELGDGWLWVTAHRTGEQGMI 183
+ A+ + E+ +KGD+ + W W + G G I
Sbjct: 3 HHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDW-WKVRTKNGNIGYI 61
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 31.8 bits (72), Expect = 0.18
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 SFLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTFECLDAVI 50
S+L+R S PG Y+L +Q + FR+ ++ G + FE + ++
Sbjct: 73 SYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFV-GEKRFESIHDLV 121
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 31.3 bits (71), Expect = 0.20
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 138 AILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWVTAHRTGEQGMIFRDLVEDLDETIDP 197
+ YT D DEL F KG I V N+ W +G+ G+ + V+ +
Sbjct: 7 GMYDYTAQND-DELAFSKGQIINVLNKEDPDWWKGE--VSGQVGLFPSNYVKLTTDMDPS 63
Query: 198 NT 199
Sbjct: 64 QQ 65
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 31.4 bits (70), Expect = 0.21
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 18/142 (12%)
Query: 57 QIVEGHTLGFPVTRIN-LGIFIP-----SAIFRVTAVCGD--FYIGGRQFDSLS--DLIS 106
+ +G ++G + N +GIF+ S + GD + F ++ + +
Sbjct: 6 KFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVL 65
Query: 107 YYSSCSDLLKRERLAHPCPPP------EPVNDKKRIVAILPYTKMPDTDELTFQKGDIFF 160
+ + LA V D I Y K L+F KG++F
Sbjct: 66 FLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP-YGLSFNKGEVFR 124
Query: 161 VHNELGDG-WLWVTAHRTGEQG 181
V + L +G A R G+
Sbjct: 125 VVDTLYNGKLGSWLAIRIGKNH 146
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 31.3 bits (70), Expect = 0.22
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 136 IVAILPYTKMPDTDELTFQKGDIFFVHNELGDGW 169
I P L F +GD+F V + L G
Sbjct: 7 IRTHFELEPSPP-SGLGFTRGDVFHVLDTLHPGP 39
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 30.6 bits (69), Expect = 0.26
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 34/141 (24%)
Query: 1 SFLVRPSDNSPGDYSLFFHI-NNQIQRFRIEKKAVRYLMGGRTFECLDAVINRY------ 53
FL+R + G L ++ +IE+ + Y + FE +D VI+ Y
Sbjct: 35 DFLIRKG-SRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSNKHFEDIDEVISVYVRPILR 93
Query: 54 -------------RKEQIVEGHTL--------GFPVTRINLGIFI---PSAIFRVT--AV 87
E + + F +R G + V
Sbjct: 94 NLKSIKAHAKYFNSPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYNNGSILEEYIGV 153
Query: 88 CGDFYIGGRQFDSLSDLISYY 108
F + ++Y
Sbjct: 154 SDMLTYNNSTFKDIDSFVAYR 174
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 30.6 bits (68), Expect = 0.43
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 18/147 (12%)
Query: 52 RYRKEQIVEGHTLGFPVTRIN-LGIFIP-----SAIFRVTAVCGD--FYIGGRQFDSLS- 102
+ + +G ++G + N +GIF+ S + GD + F ++
Sbjct: 9 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 68
Query: 103 -------DLISYYSSCSDLLKRERLAHPCPPPEPVNDKKRIVAILPYTKMPDTDELTFQK 155
+ + L ++++ + V D I Y K L+F K
Sbjct: 69 EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP-YGLSFNK 127
Query: 156 GDIFFVHNELGDGWL-WVTAHRTGEQG 181
G++F V + L +G L A R G+
Sbjct: 128 GEVFRVVDTLYNGKLGSWLAIRIGKNH 154
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 30.6 bits (70), Expect = 0.43
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 107 YYSSCS-DLLKRERLAHP-----CPPPEPVNDKKRIVAILPYT---KMPDTDELTFQ--- 154
Y + + + L++ R P ++R P+ K+P +
Sbjct: 103 YRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162
Query: 155 KGDIFFVHNELGD 167
+G + + + E+ D
Sbjct: 163 RGVVVYDNQEIPD 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.69
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 41/104 (39%)
Query: 48 AVINRYRKEQIVE------GHTLG-FPVTRINLGIFIPSAIFRVTAVCGDFYIGGRQFDS 100
A + + ++ GH+LG + +A+ + S
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEY------------AAL-----AS----LAD--VMS 1778
Query: 101 LSDLISYYSSCSDLLKRER---LAHPCPPPEPVNDKKRIVAILP 141
+ L+ +++ R + P E ++AI P
Sbjct: 1779 IESLV-------EVV-FYRGMTMQVAVPRDELGRSNYGMIAINP 1814
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 27.5 bits (62), Expect = 0.81
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 147 DTDELTFQKGDIFFVHNEL--GDGWLW 171
++ +L F+KGD+ + + + W W
Sbjct: 16 ESGDLPFRKGDVITILKKSDSQNDW-W 41
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 28.3 bits (64), Expect = 2.6
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 107 YYSSCS----DLLKRERLAHPCPP-------PEPVNDKKRIVAILPYT---KMPDTDELT 152
Y S D L+ + A P PEP A + + P T +
Sbjct: 119 YPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVA 178
Query: 153 FQ---KGDIFFVHNELGD 167
+ KG + + EL D
Sbjct: 179 WDDAVKGRVEISNEELDD 196
>1oy3_C Transcription factor P65; protein-protein complex, transcription
factors, nuclear localization, DNA binding protein;
2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Length = 136
Score = 26.5 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2 FLVRPSDNSPGDYSLFFHINNQIQRFRIEKKAVRYLMGGRTF 43
L RPSD + F ++ + R RIE+K R ++
Sbjct: 81 QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKRTYETFKSI 122
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 26.6 bits (59), Expect = 7.8
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 151 LTFQKGDIFFVHNELGDGWLW 171
L F+ GDI V N D W W
Sbjct: 27 LPFKHGDILHVTNASDDEW-W 46
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 26.4 bits (59), Expect = 9.5
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 107 YYSSCS-DLLKRERLAHPCPPPEPVNDKKRIVAILPYT---KMPDTDELTFQ---KGDIF 159
YY + +E P + P T K+ + +F+ KG +
Sbjct: 231 YYVVYDKEDPSKELFTTYEYPH------EYKEKGHPVTIKFKVLP-GKTSFEDLLKGYME 283
Query: 160 FVHNELGD 167
F ++ L D
Sbjct: 284 FDNSTLED 291
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 26.3 bits (58), Expect = 9.6
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 131 NDKKRIVAILPYTKMPDTDELTFQKGDIFFVHNELGDGWLWV 172
+ + + + K +G+ W+WV
Sbjct: 178 SGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWV 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.445
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,888,809
Number of extensions: 237911
Number of successful extensions: 1002
Number of sequences better than 10.0: 1
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 401
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)