BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13529
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G +I++ + D NAKD DG TP +AA +G+ E ++LL+ +G
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 93
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G +I++ + D NAKD DG TP +AA +G+ E ++LL+ +G
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G D +++ + D NA D DG TP +AA +G+ E ++LL+ +G
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G +I++ + D N D DG TP A GN E ++LL +G
Sbjct: 110 AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 70
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I+ K D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I+ K D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 87 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I+ K D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I+ K D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I+ K D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I+ K D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NAKD+DG TP AA +G+LE + +L+ G
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NAKDE G+TP A G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 16 QANSSYLLLPPR-AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
A Y L P A G L+I+ K D NA D G TP AAF G+LE +L+
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Query: 73 GRG 75
G
Sbjct: 101 KHG 103
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 4 LVLLVTNRAYGPQANSSYLLLP-PRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAA 60
+V L+ ++ P A S P AA++G +I++ + D NAKD DG TP +AA
Sbjct: 52 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Query: 61 FQGNLEALRLLVGRG 75
G+ E ++LL+ +G
Sbjct: 112 ENGHKEIVKLLLSKG 126
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G +I++ + D NAKD DG TP +AA G+ E ++LL+ +G
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G D +++ D NA D DG TP +AA G+ E ++LL+ +G
Sbjct: 10 EAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 4 LVLLVTNRAYGPQANSSYLLLP-PRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAA 60
+V L+ ++ P A S P AA++G +I++ + D N D DG TP A
Sbjct: 85 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 61 FQGNLEALRLLVGRG 75
GN E ++LL +G
Sbjct: 145 EHGNEEIVKLLEKQG 159
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 13 YGPQANS--SYLLLPPR-AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEA 67
YG N+ +Y P AA +G L+I+ K D NAKD +G TP AA+ G+LE
Sbjct: 69 YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 68 LRLLVGRG 75
+ +L+ G
Sbjct: 129 VEVLLKYG 136
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA+D+ G TP AA +G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D+ G TP AA G+LE + +L+ G
Sbjct: 54 AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D DG TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 1 MAILVLLVTNRAYGPQANSSYL--LLPPR-AAQDGMLDILREATKR--DCNAKDEDGMTP 55
+ I+ +L+ N G N+S L + P AA G L+I+ K D NA D DG TP
Sbjct: 60 LEIVEVLLKN---GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTP 116
Query: 56 TLWAAFQGNLEALRLLVGRG 75
AA G+LE + +L+ G
Sbjct: 117 LHLAAKYGHLEIVEVLLKHG 136
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G L+I+ K D NA D G+TP AA G+LE + +L+ G
Sbjct: 54 AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G ++++ + D NAKD DG TP AA G+ E ++LL+ +G
Sbjct: 43 HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 93
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G ++++ + D NAKD DG TP AA G+ E ++LL+ +G
Sbjct: 76 HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G D +++ + D NA D DG TP AA G+ E ++LL+ +G
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G ++++ + D N D DG TP A GN E ++LL +G
Sbjct: 109 HAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA DEDG+TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AAQ G L+I+ K D NA+D G+TP AA +G+LE + +L+ G
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ EA D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 9 AARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ EA D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 42 AARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ EA D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 75 AARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G TP AA+ G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D DGMTP AA G LE + +L+ G
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D +A D G TP AA+ G+LE + +L+ G
Sbjct: 54 AAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ EA D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 9 AARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ EA D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 42 AARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA +D + IL A D NA+D G TP AAF G+LE + +L+ G
Sbjct: 18 LLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G L+I+ K D NA D GMTP AA G+LE + +L+ G
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D +G TP AA G+LE + +L+ G
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 1 MAILVLLVTNRAYGPQA----NSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPT 56
M + +L+ NRA A ++ L+L R A +GM++ L A D NA D G T
Sbjct: 97 MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA-DINAADNSGKTAL 155
Query: 57 LWAAFQGNLEALRLLV 72
WAA N EA+ +L+
Sbjct: 156 HWAAAVNNTEAVNILL 171
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G+TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 6 LLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQG 63
+L+ N A +++ L AA G L+I+ K D +A D G TP AA G
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
Query: 64 NLEALRLLVGRG 75
+LE + +L+ G
Sbjct: 92 HLEIVEVLLKYG 103
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G TP AA +G+LE + +L+ G
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D AKD++G TP AA G+LE ++LL+ G
Sbjct: 10 LLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 4 LVLLVTNRAYGPQANSSYLLLPPR-AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAA 60
+V L+ ++ P A S P AA++G ++++ + D NAKD DG TP AA
Sbjct: 52 VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 111
Query: 61 FQGNLEALRLLVGRG 75
G+ E ++LL+ +G
Sbjct: 112 ENGHKEVVKLLLSQG 126
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G ++++ + D NAKD DG TP AA G+ E ++LL+ +G
Sbjct: 44 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G D +++ + D NA D DG TP AA G+ E ++LL+ +G
Sbjct: 10 EAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 4 LVLLVTNRAYGPQANSSYLLLPPR-AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAA 60
+V L+ ++ P A S P AA++G ++++ + D N D DG TP A
Sbjct: 85 VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Query: 61 FQGNLEALRLLVGRG 75
GN E ++LL +G
Sbjct: 145 EHGNEEVVKLLEKQG 159
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G+TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 6 LLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQG 63
+L+ N A ++S L AA G L+I+ K D NA D G TP AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 64 NLEALRLLVGRG 75
+LE + +L+ G
Sbjct: 92 HLEIVEVLLKHG 103
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D AKD++G TP AA G+LE ++LL+ G
Sbjct: 28 LLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G+TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 6 LLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQG 63
+L+ N A ++S L AA G L+I+ K D NA D G TP AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 64 NLEALRLLVGRG 75
+LE + +L+ G
Sbjct: 92 HLEIVEVLLKHG 103
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G L+I+ K D NA D G+TP AA+ G+LE + +L+ G
Sbjct: 46 AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 1 MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKR--DCNAKDEDGMTPTLW 58
+ I+ +L+ N A ++S+ + AA DG L+I+ K D NA D G TP
Sbjct: 52 LEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL 111
Query: 59 AAFQGNLEALRLLVGRG 75
AA G LE + +L+ G
Sbjct: 112 AALSGQLEIVEVLLKHG 128
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL A QD + IL A D NA D++G+TP AA G LE + +L+ G
Sbjct: 10 LLEAAAAGQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NAKD++G+TP AA +G+LE + +L+ G
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA +D + IL A D NA D G TP AA+ G+LE + +L+ G
Sbjct: 18 LLEAARAGRDDEVRILM-ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 54 AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D+ G+TP AA +G+LE + +L+ G
Sbjct: 18 LLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D+ G+TP AA +G+LE + +L+ G
Sbjct: 18 LLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D+ G+TP AA +G+LE + +L+ G
Sbjct: 18 LLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA+D G TP AA G+LE + +L+ G
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 29 AQDGMLDILREATKRD---CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G LD L+E ++ N DE G TP +WA+ G +E +R L+ G
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G DI+ +RD N D +G TP L+A +++ + L+ RG
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NAKD G+TP AA+ G+LE + +L+ G
Sbjct: 75 AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G TP AA G+LE + +L+ G
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG 58
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ + D NA D +G TP AA G+LE + +L+ G
Sbjct: 42 AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 29 AQDGMLDILREATKRD---CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G LD L+E ++ N DE G TP +WA+ G +E +R L+ G
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G TP AA+ G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 1 MAILVLLVTNRAYGPQANSSYLLLPPRAAQD-GMLDILREATKR--DCNAKDEDGMTPTL 57
+ I+ +L+ N A A+ S + P A D G L+++ K D NA D +G TP
Sbjct: 60 LEIVEVLLKNGA-DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
Query: 58 WAAFQGNLEALRLLVGRG 75
AA G+LE + +L+ G
Sbjct: 119 LAANIGHLEIVEVLLKHG 136
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G+TP AA +G+LE + +L+ G
Sbjct: 54 AAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA+D+ G+TP AA +LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA + L+I+ K D NA D G TP A G+LE + +L+ G
Sbjct: 54 AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 13 YGPQANSSYLLLPPRAAQDGMLDILREATKRDC-NAKDEDGMTPTLWAAFQGNLEALRLL 71
Y ANS L + AAQ ML + + + N DE+G TP +WAA G + + L
Sbjct: 14 YFQGANS--LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 71
Query: 72 VGRG 75
+ G
Sbjct: 72 LQNG 75
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
Length = 169
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA+D G TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NAKD G+TP AA +G+LE + +L+ G
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA D G TP AA +G+LE + +L+ G
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 16 QANSSYLLLPPR-AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AN + + P +G L+I+ K D NA D+ G TP AA++G+LE + +L+
Sbjct: 41 NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLL 100
Query: 73 GRG 75
G
Sbjct: 101 KYG 103
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
LL RA QD + IL A D NA D G+TP G+LE + +L+
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNANDWFGITPLHLVVNNGHLEIIEVLL 67
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D+ G TP AA+ G+ E + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G L+I+ K D NA+D G+TP AA +G+LE + +L+ G
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NA+D DG TP AA G+LE + +L+ G
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILREATKRDC-NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AAQ ML + + + N DE+G TP +WAA G + + L+ G
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 57
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILREATKRDC-NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AAQ ML + + + N DE+G TP +WAA G + + L+ G
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
Length = 135
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILT-ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA+D G TP AA G+LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA D G TP AA G+LE + +L+ G
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G L+I+ K D NA D G TP AA +G+LE + +L+ G
Sbjct: 54 AARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NA D DG TP AA G+LE + +L+ G
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
LL RA QD + IL A D NA D G TP AA +LE + +L+ G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+IL + D NA D+ +TP L A ++G++ ++LL+ +G
Sbjct: 42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+IL + D NA D+ +TP L A ++G++ ++LL+ +G
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G + +++ + D NA+ +DG TP AA G+ E ++LL+ +G
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G +I++ A D NA+ +DG TP A G+ E ++LL +G
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 19 SSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
S+ L L + ++ L + D N +D+ G TP +WA +++ ++LL+ +G
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKRDCNAK--DEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G +DI + N ED TP + AA +LEA++ L+ G
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILR--EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA G ++L+ + D N KD DG TP AA G EA R+LV
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGN-LEALRLLV 72
AAQ G I+ A +D + D++GMTP +WAA++ + ++ RLL+
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 39 EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ T+ D N D+ G +P WA +G + +L+ RG
Sbjct: 21 DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 57
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 39 EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ T+ D N D+ G +P WA +G + +L+ RG
Sbjct: 26 DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 12 AYGPQANSSYLLLPPRAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALR 69
A QA + L+L A G +D+++ A + D N +D+DG T + A G+ E
Sbjct: 177 AKASQAGQTALML---AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 70 LLVG 73
LL+
Sbjct: 234 LLLA 237
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
Length = 241
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 49 DEDGMTPTLWAAFQGNLEALRLLV 72
DEDG TP A QGNL A+ LV
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLV 29
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G + + +RD NA ++G+TP A NL+ ++LL+ RG
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ +DEDG TP AA +G +E + L+ +G
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G +I+ K D NAKD MT WA + E + LL+ G
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G LD L+ + D N +D +G P AA +G+L + LV
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G LD L+ + D N +D +G P AA +G+L + LV
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G LD L+ + D N +D +G P AA +G+L + LV
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G LD L+ + D N +D +G P AA +G+L + LV
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
R A + L L E RD +A DE+G T L+ A G+ + +RLL G
Sbjct: 54 RKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G LD L+ + D N +D +G P AA +G+L + LV
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA D DG TP AA N++ + LV G
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESG 126
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA D DG TP AA N++ + LV G
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESG 126
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +AKD+ G+ P A G+ E LLV G
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 102
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric
Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric
Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric
Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric
Peptide)
Length = 165
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +AKD+ G+ P A G+ E LLV G
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +AKD+ G+ P A G+ E LLV G
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 100
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By
The Chloroplast Signal Recognition Particle Protein
Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By
The Chloroplast Signal Recognition Particle Protein
Cpsrp43
Length = 183
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 43 RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
RD +A DE+G T L+ A G+ + +RLL G
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,172,454
Number of Sequences: 62578
Number of extensions: 65392
Number of successful extensions: 312
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 168
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)