RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13529
(75 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families
of proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 39.3 bits (92), Expect = 2e-05
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G L++++ + NAKD DG TP AA G+LE ++LL+ +G
Sbjct: 14 AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63
Score = 37.4 bits (87), Expect = 1e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I++ ++ NA+D+DG TP AA GNL+ ++LL+ G
Sbjct: 47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96
Score = 33.9 bits (78), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA+DEDG TP AA G+LE ++LL+ G
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENG 30
Score = 33.5 bits (77), Expect = 0.002
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA++G LD+++ K D NA+D+DG TP AA G+LE ++LL+
Sbjct: 80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 38.0 bits (89), Expect = 3e-05
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+I++ D NAKD+DG T AA GNLE ++LL+ G
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84
Score = 33.0 bits (76), Expect = 0.002
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ ++ + D T AA GNLE ++LL+ G
Sbjct: 4 AAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHG 51
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 36.4 bits (85), Expect = 5e-05
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 27 RAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
+AA G L++++ D N DEDG T AA GNLE L+LL+
Sbjct: 7 KAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 31.6 bits (72), Expect = 0.005
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 37 LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
L E D NA D +G TP AA G LE ++ L+ G
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG 39
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 30.2 bits (69), Expect = 0.011
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
DG TP AA G+LE ++LL+ G
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAG 25
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 32.1 bits (72), Expect = 0.014
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 33 MLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
L + A N +DEDG TP WAA G+ + + LL+ G
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG 170
Score = 30.6 bits (68), Expect = 0.043
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 6 LLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQG 63
L + + + L AA G I++ D NAKD DG TP AA G
Sbjct: 58 LKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG 117
Query: 64 NL-----EALRLLVGRG 75
N E +LL+ G
Sbjct: 118 NPPEGNIEVAKLLLEAG 134
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 31.4 bits (71), Expect = 0.025
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 11 RAYGPQANSSYLLLPPRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEAL 68
P A L AA+ L ++E K+ + +++D G T A + +++ +
Sbjct: 615 SISDPHAAGDLLCT---AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMV 671
Query: 69 RLLVGRG 75
RLL+ G
Sbjct: 672 RLLIMNG 678
>gnl|CDD|237943 PRK15318, PRK15318, intimin-like protein SinH; Provisional.
Length = 730
Score = 28.8 bits (64), Expect = 0.20
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 6 LLVTNRAYGPQANSSYLLLPPRAAQDG------MLDILREATKRDCNAKDEDGMTPTLWA 59
L+V N A ++N S+ DG + D + T R+ N ED MTP L+
Sbjct: 486 LIVNNIADVDRSNHSHEASAQADGVDGVVMDLDITDSFGDNTDRNGNTLPEDNMTPQLYD 545
Query: 60 A 60
A
Sbjct: 546 A 546
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 26.4 bits (59), Expect = 0.27
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
DG TP AA GNLE ++LL+ +G
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKG 25
>gnl|CDD|151038 pfam10472, CReP_N, eIF2-alpha phosphatase phosphorylation
constitutive repressor. This is the conserved
N-terminal domain of CReP, constitutive repressor of
eIF2-alpha phosphorylation/protein phosphatase 1,
catalytic subunit. It functions in the dephosphorylation
of eIF2-alpha under basal conditions in the absence of
stress. In response to translation inhibition, there is
reduced synthesis of the labile CReP that contributes to
elevated levels of eIF2-alpha phosphorylation. The
C-terminus, family PP1c, is shared with the
apoptosis-associated protein Gadd34 and herpes simplex
virus.
Length = 411
Score = 27.8 bits (61), Expect = 0.47
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 52 GMTPTLWAAFQGNLEALRLLVGR 74
G+ PT W F + ALR L GR
Sbjct: 90 GLFPTRWLDFAASYSALRALKGR 112
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 27.7 bits (61), Expect = 0.48
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NAKD +TP +AA +GN + + LL+ G
Sbjct: 170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYG 201
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 25.7 bits (57), Expect = 0.52
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
DG TP AA GNLE ++LL+ G
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHG 25
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 27.6 bits (61), Expect = 0.63
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N +D DG TP A G+++ +R+L+ G
Sbjct: 107 DPNCRDYDGRTPLHIACANGHVQVVRVLLEFG 138
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 27.3 bits (61), Expect = 0.65
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N KD G TP +A + N E ++ L+ G
Sbjct: 184 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG 215
>gnl|CDD|151256 pfam10806, DUF2731, Protein of unknown function (DUF2731). This
eukaryotic family of proteins has no known function.
Length = 124
Score = 26.6 bits (59), Expect = 0.79
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 7 LVTNRAYGPQANSSYLLLPPRAAQDGMLDILRE 39
L T P++ S L L A+ D L IL E
Sbjct: 92 LPTESTSPPKSGHSILTLSFLASPDNQLPILIE 124
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 26.9 bits (59), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 50 EDGMTPTLWAAFQGNLEALRLLVGRG 75
+DGMTP A L+ ++LL+ RG
Sbjct: 100 KDGMTPLHLATILKKLDIMKLLIARG 125
>gnl|CDD|215539 PLN02998, PLN02998, beta-glucosidase.
Length = 497
Score = 26.6 bits (58), Expect = 1.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 47 AKDEDGMTPTLWAAF 61
A DEDG TP++W F
Sbjct: 49 AADEDGRTPSIWDVF 63
>gnl|CDD|161732 TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/BmrU family. The
E. coli member of this family, YegS has been purified
and shown to have phosphatidylglycerol kinase activity.
The member from M. tuberculosis, Rv2252, has
diacylglycerol kinase activity. BmrU from B. subtilis is
in an operon with multidrug efflux transporter Bmr, but
is uncharacterized [Unknown function, Enzymes of unknown
specificity].
Length = 293
Score = 26.3 bits (58), Expect = 1.6
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDIL 37
+V LV N G QA L P + DG+LD+
Sbjct: 191 AVVFLVGN---GRQAGGGQKLAPDASINDGLLDLR 222
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 25.8 bits (57), Expect = 1.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 30 QDGMLDILREATKRDCNAKDEDGMTPTLWAAF 61
+ LDILR+ + N+ + G+ +W AF
Sbjct: 428 EGNALDILRQVDEIFINSIKDAGLYDEIWQAF 459
>gnl|CDD|233343 TIGR01287, nifH, nitrogenase iron protein. This model describes
nitrogenase (EC 1.18.6.1) iron protein, also called
nitrogenase reductase or nitrogenase component II. This
model includes molybdenum-iron nitrogenase reductase
(nifH), vanadium-iron nitrogenase reductase (vnfH), and
iron-iron nitrogenase reductase (anfH). The model
excludes the homologous protein from the
light-independent protochlorophyllide reductase
[Central intermediary metabolism, Nitrogen fixation].
Length = 275
Score = 25.8 bits (57), Expect = 2.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 15 PQANSSYLLLPPRAAQDGMLDILREATKRDCNAKD 49
P+A+S+ LLL +A Q +LD+LRE D +D
Sbjct: 38 PKADSTRLLLGGKA-QPTVLDVLREKGAEDLELED 71
>gnl|CDD|215435 PLN02814, PLN02814, beta-glucosidase.
Length = 504
Score = 25.3 bits (55), Expect = 3.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 47 AKDEDGMTPTLWAAF 61
A DEDG TP++W
Sbjct: 46 AVDEDGRTPSVWDTT 60
>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein.
Length = 322
Score = 24.6 bits (53), Expect = 5.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 15 PQANSSYLLLPPRAAQDGMLDILRE 39
P AN Y++ P + + ++DILRE
Sbjct: 243 PSANGRYIIDGPIMSVNDIIDILRE 267
>gnl|CDD|225969 COG3435, COG3435, Gentisate 1,2-dioxygenase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 351
Score = 24.3 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 13/41 (31%)
Query: 48 KDEDGMTPTLWAAFQ------------GNLEALRLLV-GRG 75
+ +TPTL+A Q N ALR +V G+G
Sbjct: 83 RGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKG 123
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction
ATPase PilT [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 353
Score = 24.1 bits (53), Expect = 8.1
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 24 LPPRAAQDGMLDILREA--TKRDCNAKDEDGMTPTLWAAFQGNLEA 67
LPPR DG L + T D + + + + N E
Sbjct: 26 LPPRIRIDGELRPINYPPLTAEDVQSLLREILNDDQRKILEENGEL 71
>gnl|CDD|236976 PRK11773, uvrD, DNA-dependent helicase II; Provisional.
Length = 721
Score = 24.1 bits (53), Expect = 8.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 25 PPRAAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR 74
P R D LD++R+ + R TLW A + L+ ++L GR
Sbjct: 414 PTRGIGDRTLDVVRQTARDRQL----------TLWQACRALLQE-KVLAGR 453
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,836,239
Number of extensions: 288403
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 38
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)