RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13529
(75 letters)
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 42.3 bits (101), Expect = 4e-07
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ + D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Score = 40.0 bits (95), Expect = 2e-06
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ A D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 42 AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 31.2 bits (72), Expect = 0.007
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
+G TP AA G+LE ++LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG 25
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END
capping, inhibition, prote binding, actin capping,
actin-binding, cytoskeleton, ANK RE; 2.20A {Homo
sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Length = 123
Score = 42.8 bits (102), Expect = 4e-07
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A ++G LD +++ + D N E G P +AA G LE L L+ +G
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Score = 41.6 bits (99), Expect = 1e-06
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+IL A D NA D+ +TP L A ++G++ ++LL+ +G
Sbjct: 47 AADCGQLEILEFLLLKGA---DINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Score = 31.6 bits (73), Expect = 0.007
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 47 AKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+WA G+L+ ++ V +G
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKG 30
Score = 31.6 bits (73), Expect = 0.007
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLE 66
A +G + ++ A D K DG+T Q
Sbjct: 80 AVYEGHVSCVKLLLSKGA---DKTVKGPDGLTAFEATDNQAIKA 120
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 44.0 bits (105), Expect = 5e-07
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A Q G+ + RE + D D++ +T WAA ++ ++ + +G
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Score = 40.5 bits (96), Expect = 7e-06
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + G L + A D + D +G + AA G+ + L+ +G
Sbjct: 83 ATRQGHLSMVVQLMKYGA---DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Score = 39.7 bits (94), Expect = 1e-05
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D+ + A G E R LV G
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAG 32
Score = 39.3 bits (93), Expect = 2e-05
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGN-LEALRLLVGRG 75
AAQ G I+ D + D++GMTP +WAA++ + ++ RLL+
Sbjct: 116 AAQFGHTSIVAYLIAKGQ---DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166
Score = 37.8 bits (89), Expect = 6e-05
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ +A++ G + A + N+ + L
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Score = 36.3 bits (85), Expect = 2e-04
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 44 DCNAKDED-GMTPTLWAAFQGNLEALRLLVGRG 75
+ D TP WA QG+L + L+ G
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99
Score = 35.9 bits (84), Expect = 4e-04
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 46 NAKDE-DGMTPTLWAAFQGNLEALRLLVGRG 75
N D+ T WA GN + LL+ G
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 42.5 bits (101), Expect = 8e-07
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G LD L A + +D G P A G+ + R L
Sbjct: 85 AAREGFLDTLVVLHRAGA---RLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Score = 38.6 bits (91), Expect = 2e-05
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 42 KRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + E AA +G +E +R L+ G
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAG 35
Score = 38.6 bits (91), Expect = 2e-05
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G ++ +R + + NA + G P G+ LL+ G
Sbjct: 19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67
Score = 35.9 bits (84), Expect = 3e-04
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 44 DCNAKDEDGMTPTL-WAAFQGNLEALRLLVGRG 75
+ N D +T + AA +G L+ L +L G
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase,
pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens}
PDB: 3ixe_A 2kbx_A
Length = 179
Score = 42.8 bits (102), Expect = 9e-07
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
++G +R + T+ D N D+ G +P WA +G + +L+ RG
Sbjct: 12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Score = 39.7 bits (94), Expect = 1e-05
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G DI+++ A D NA +E G P +A F G + LV G
Sbjct: 79 AASHGHRDIVQKLLQYKA---DINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Score = 36.6 bits (86), Expect = 2e-04
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N + TP AA G+ + ++ L+
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Score = 35.9 bits (84), Expect = 2e-04
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ ++ G P A G
Sbjct: 130 LVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161
Score = 34.7 bits (81), Expect = 7e-04
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 49 DEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ M +GN A+RL +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNT 28
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 42.0 bits (100), Expect = 1e-06
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G LD L A + D G P A QG+ + R L
Sbjct: 85 AAREGFLDTLVVLHRAGA---RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 39.3 bits (93), Expect = 9e-06
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ AA +G +E +R L+ G
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAG 35
Score = 38.2 bits (90), Expect = 3e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G ++ +R+ + D NA + G P + G+ + LL+ G
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRP-IQVMMMGSAQVAELLLLHG 67
Score = 35.9 bits (84), Expect = 2e-04
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 44 DCNAKDEDGMTPTL-WAAFQGNLEALRLLVGRG 75
+ N D +T + AA +G L+ L +L G
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101
>3v31_A Ankyrin repeat family A protein 2; structural genomics
consortium, SGC, ankra2, ANK repeat, Pro binding,
HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 42.4 bits (101), Expect = 1e-06
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G + L ++ N DE+G TP +WAA G + + L+ G
Sbjct: 10 LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59
Score = 39.7 bits (94), Expect = 9e-06
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G DI++ D N D +G TP L+A +++ +++L+ G
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Score = 38.9 bits (92), Expect = 2e-05
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D + + G A G +++
Sbjct: 127 DPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Score = 38.9 bits (92), Expect = 2e-05
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G + ++ + D + + A +G + +++L+ G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Score = 30.8 bits (71), Expect = 0.020
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
A QG + L + +
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQE 26
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 42.4 bits (101), Expect = 1e-06
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + + + R D + + G TP A G + +++
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 42.0 bits (100), Expect = 2e-06
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 27 RAAQDGMLDILREATKRDC---NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ A G LD L+E ++ N DE G TP +WA+ G +E +R L+ G
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Score = 41.2 bits (98), Expect = 3e-06
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G DI+ +R D N D +G TP L+A +++ + L+ RG
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Score = 40.9 bits (97), Expect = 4e-06
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G ++ +R + D + ++ + A+ G + + LL+ R
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Score = 31.6 bits (73), Expect = 0.010
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 52 GMTPTLWAAFQGNLEALRLLVGRG 75
A QG L+ L+ + +G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKG 25
Score = 23.9 bits (53), Expect = 5.3
Identities = 1/12 (8%), Positives = 2/12 (16%)
Query: 44 DCNAKDEDGMTP 55
+ P
Sbjct: 160 KLFQSNLVPADP 171
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 41.8 bits (99), Expect = 2e-06
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
G ++ + E P AA +GNL LR +
Sbjct: 52 GTSKGRTGLIPSN---YVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96
Score = 38.0 bits (89), Expect = 7e-05
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G L LRE N D+ G T WA G+ + + +L
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF 126
Score = 37.6 bits (88), Expect = 7e-05
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G DI L + N +++ G T AA++G + ++LL+ +G
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Score = 37.6 bits (88), Expect = 8e-05
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ ++ + A L+ G
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Score = 32.6 bits (75), Expect = 0.005
Identities = 6/42 (14%), Positives = 8/42 (19%), Gaps = 2/42 (4%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLE 66
RA E D + T +G
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG 59
Score = 29.1 bits (66), Expect = 0.093
Identities = 3/30 (10%), Positives = 5/30 (16%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ G A + L
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEE 35
Score = 28.4 bits (64), Expect = 0.17
Identities = 3/40 (7%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNL 65
A +L++ D + + + + +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 41.2 bits (98), Expect = 2e-06
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+ + A D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 9 AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Score = 40.8 bits (97), Expect = 3e-06
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L++++ A D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 75 AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 40.4 bits (96), Expect = 3e-06
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L+ + A D NAKD++G TP AA G+LE ++LL+ G
Sbjct: 42 AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 31.9 bits (74), Expect = 0.005
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
+G TP AA G+LE ++LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG 25
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI,
structural genomics of pathogenic protozoa consortium,
SGPP, ANK repeat; 2.90A {Leishmania major}
Length = 364
Score = 42.2 bits (100), Expect = 2e-06
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 37 LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + K + D++ M AA +G + +R L+ G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGN--LEALRLLVGRG 75
+ ++ + + K G T W G LE +++LV G
Sbjct: 118 LNECDEREV----NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163
Score = 39.9 bits (94), Expect = 1e-05
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G D I ++ G T A G ++ + L G
Sbjct: 27 AARKGQTDEVRRLIETGV---SPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 38.3 bits (90), Expect = 4e-05
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ G + + R+ +
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346
Score = 38.3 bits (90), Expect = 4e-05
Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 28 AAQDGMLDI----LREATKR---DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + + + + + ++ G + WA + V G
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234
Score = 38.3 bits (90), Expect = 5e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AKD+ TP + A N EAL L++
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTV 196
Score = 37.2 bits (87), Expect = 1e-04
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N +D + P + + + L+ +
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267
Score = 34.1 bits (79), Expect = 0.001
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + G +D + G P A + + LV
Sbjct: 60 ACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA 107
Score = 33.3 bits (77), Expect = 0.002
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 43 RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ AA E L+LL +
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313
Score = 26.0 bits (58), Expect = 1.1
Identities = 4/27 (14%), Positives = 5/27 (18%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLV 72
E G P E +
Sbjct: 105 EGAKERGQMPESLLNECDEREVNEIGS 131
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 41.7 bits (99), Expect = 2e-06
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N ++ +P L+A QG E L ++
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Score = 41.3 bits (98), Expect = 3e-06
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D +G TP A ++E + L+ RG
Sbjct: 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Score = 39.7 bits (94), Expect = 1e-05
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G +IL + D N + G + AA +G+++ ++LL+ G
Sbjct: 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Score = 37.4 bits (88), Expect = 7e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
D + KD G T +A +G E ++L
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 34.3 bits (80), Expect = 0.001
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAF-----QGNLEALRLLVGRG 75
AA+ G +D L E + D + +++ G T + A Q + ++LL+ G
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Score = 32.4 bits (75), Expect = 0.005
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 48 KDEDGMTPTLWAAFQGNLEALRLLVGRG 75
K + A + + +L
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTT 29
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP
system, signal sequence, ankyrin repeat, chromodomain,
type I turn; 1.50A {Arabidopsis thaliana} SCOP:
b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 41.7 bits (99), Expect = 2e-06
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ L + + RD +A DE+G T L+ A G+ + +RLL G
Sbjct: 51 AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99
Score = 36.3 bits (85), Expect = 2e-04
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +DE G+T A + G
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFG 166
Score = 34.8 bits (81), Expect = 8e-04
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 44 DCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG 75
D + +D G+T AA E + LV G
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133
Score = 34.0 bits (79), Expect = 0.001
Identities = 5/37 (13%), Positives = 9/37 (24%)
Query: 39 EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
E K + +G L G+ +
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA 37
Score = 31.7 bits (73), Expect = 0.010
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
+DG ++ + + TP AA + + +AL L+
Sbjct: 21 EWKDGHSPSWVPSSYIAAD-VVSEYETPWWTAARKADEQALSQLL 64
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 40.3 bits (95), Expect = 3e-06
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G D +R D AKD++G TP AA G+LE ++LL+ G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Score = 33.7 bits (78), Expect = 0.001
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ R + D L AA G + +R+L+ G
Sbjct: 1 GSSHHHHHHSSGLVPRGSH-MGSDLGKKLLEAARAGQDDEVRILMANG 47
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 41.5 bits (98), Expect = 3e-06
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+++++A K D + +E+G+T A N + L+ G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG 77
Score = 40.3 bits (95), Expect = 9e-06
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A I+ A + N+ D G TP AA + LV G
Sbjct: 61 AICGANYSIVDFLITAGA---NVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Score = 32.2 bits (74), Expect = 0.006
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 44 DCNAKDE---DGMTPTLWAAFQGNLEALRLLVGRG 75
+ + L AA G LE ++ V
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM 44
Score = 31.1 bits (71), Expect = 0.014
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLE 66
+D T WAA G
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEG 202
Score = 29.5 bits (67), Expect = 0.057
Identities = 4/32 (12%), Positives = 7/32 (21%), Gaps = 1/32 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + LW + L G
Sbjct: 148 SMGLMNSGAVYA-LWDYSAEFGDELSFREGES 178
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 41.2 bits (98), Expect = 3e-06
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G ++ L + D N +D+ G TP +WA +++ ++LL+ +G
Sbjct: 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Score = 40.9 bits (97), Expect = 5e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + ED TP + AA +LEA++ L+ G
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Score = 40.5 bits (96), Expect = 8e-06
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++ D + R++ D K+++G TP A+ + + +
Sbjct: 184 AARENRYDCVVLFLSRDS---DVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
Score = 39.7 bits (94), Expect = 1e-05
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + +D + + + D N +D + WAAF G ++ +L+
Sbjct: 118 ATEYKHVDLVKLLLSKGS---DINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Score = 39.7 bits (94), Expect = 1e-05
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + ++ +P AA G+++ +LV G
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG 34
Score = 39.3 bits (93), Expect = 2e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ KD +G T AA +G+ E ++ L+ G
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 39.3 bits (93), Expect = 2e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G +D + + D +A + G +P AA + + + L + R
Sbjct: 151 AAFSGCVDIAEILLAAKC---DLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 41.3 bits (98), Expect = 4e-06
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 28 AAQDGMLDILR------EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + LR D A++ DG+T A E ++LL+ RG
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Score = 39.4 bits (93), Expect = 2e-05
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + + TP A +RLLV G
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Score = 39.0 bits (92), Expect = 3e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ NA+ G + A+ +G L +R LV G
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206
Score = 38.2 bits (90), Expect = 5e-05
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A D G T A + LR L+
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102
Score = 38.2 bits (90), Expect = 5e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D + K+ TP + A + ++ LR R
Sbjct: 208 DSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
Score = 36.7 bits (86), Expect = 2e-04
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLV 72
DEDG TP A QGNL A+ LV
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLV 29
Score = 32.8 bits (76), Expect = 0.003
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 44 DCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG 75
D +A D + G +P + A +L ++LL+ G
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 41.3 bits (98), Expect = 4e-06
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ +++ R + NA+ G+TP AA +G+ E + LL+ +
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Score = 40.9 bits (97), Expect = 5e-06
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G + + +R NA ++G+TP A NL+ ++LL+ RG
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
Score = 40.9 bits (97), Expect = 5e-06
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G ++ + EA + G TP AA G + LL+ R
Sbjct: 120 AAREGHVETVLALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Score = 40.9 bits (97), Expect = 6e-06
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G ++ + + NAK +D TP AA G+ ++LL+
Sbjct: 54 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103
Score = 40.6 bits (96), Expect = 8e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NAK + G +P AA QG+ + + LL+ G
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AAQ+G +++ + + + N ++ G+TP A +G++ +L+ G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
E G+TP A+F G+L ++ L+ RG
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRG 37
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A LDI++ R ++ +G TP AA Q +E R L+ G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G L I++ +R N + TP AA G+ E + L+
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N G TP AA +G++E + L+ +
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKE 136
Score = 39.0 bits (92), Expect = 3e-05
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+A G TP A+ GN++ ++ L+
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Score = 35.9 bits (84), Expect = 3e-04
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AAQ G DI+ N DG TP A G + +L
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 40.1 bits (95), Expect = 5e-06
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G + + + A D NA+ +DG TP A G+ E ++LL +G
Sbjct: 49 AAKNGHAEIVKLLLAKGA---DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
Score = 39.3 bits (93), Expect = 8e-06
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G + +++ + D NA+ +DG TP AA G+ E ++LL+ +G
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Score = 35.0 bits (82), Expect = 4e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+DG TP AA G+ E ++ L+ +G
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKG 32
Score = 24.3 bits (54), Expect = 3.2
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 8/33 (24%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTP 55
A ++G + + A D NA+
Sbjct: 82 AKKNGHHEIVKLLDAKGA---DVNARSWGSSHH 111
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 40.6 bits (96), Expect = 7e-06
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 28 AAQDGMLDILR--------EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + G L + A + +G T A+ G L + LLV G
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140
Score = 35.6 bits (83), Expect = 4e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +D G TP A QG L ++ +L
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Score = 35.6 bits (83), Expect = 5e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N G +P + + + L
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207
Score = 35.2 bits (82), Expect = 6e-04
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N ++ TP A E L+G G
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Score = 32.1 bits (74), Expect = 0.007
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDE-DGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G L I+ A D NA++ +G T A N + + LL+ G
Sbjct: 124 ASIHGYLGIVELLVSLGA---DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Score = 29.4 bits (67), Expect = 0.066
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 47 AKDEDGMTPTLWAAFQGN----LEALRLLVGRG 75
EDG + A +E +R + G
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL 35
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 40.7 bits (96), Expect = 7e-06
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ L + + RD +A DE+G T L+ A G+ + +RLL G
Sbjct: 52 AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100
Score = 36.8 bits (86), Expect = 2e-04
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +DE G+T A + G
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFG 167
Score = 34.5 bits (80), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 44 DCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG 75
D + +D G+T AA E + LV G
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134
Score = 30.6 bits (70), Expect = 0.022
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLL 71
+DG ++ + + TP AA + + +AL L
Sbjct: 22 EWKDGHSPSWVPSSYIAAD-VVSEYETPWWTAARKADEQALSQL 64
Score = 30.6 bits (70), Expect = 0.025
Identities = 3/30 (10%), Positives = 7/30 (23%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ +G L G+ +
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIA 38
Score = 27.6 bits (62), Expect = 0.26
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ K G ++ + +
Sbjct: 191 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 40.6 bits (96), Expect = 7e-06
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A L A + +++ G T AA G + L G
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Score = 39.8 bits (94), Expect = 1e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A++ DG TP A + E +RLL G
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Score = 37.9 bits (89), Expect = 6e-05
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
EDG T A + L L+G
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFS 32
Score = 37.1 bits (87), Expect = 1e-04
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ G T A +L+
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Score = 36.8 bits (86), Expect = 1e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G TP A + N RLL G
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHG 248
Score = 32.5 bits (75), Expect = 0.005
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 44 DCNAKDED-GMTPTLWAAFQGNLEALRLLVGRG 75
D N + G TP A L LL+ G
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 31.4 bits (72), Expect = 0.015
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLE 66
D ++P + + +
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSD 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 40.1 bits (95), Expect = 9e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N D G T + AA G ++AL+ L RG
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Score = 39.8 bits (94), Expect = 1e-05
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D + ++G TP L AA G+++ L+L + +G
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Score = 39.0 bits (92), Expect = 2e-05
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + L + L E + N D DG T L A + LL RG
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 28 AAQDGMLDILREATKR------DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
A + T D N + E G TP + A + +L ++ L+
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 35.1 bits (82), Expect = 7e-04
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 28 AAQDGMLDILRE-----ATKRDCNAKDED-GMTPTLWAAFQGNLEALRLLVGRG 75
A Q+ +D++++ A + N ++E+ G TP A + + LL+ G
Sbjct: 12 AVQNEDVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Score = 33.2 bits (77), Expect = 0.003
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEAL----RLLVGRG 75
AA+ G +++L+ + D NA D G + A + + LL+ G
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Score = 31.7 bits (73), Expect = 0.010
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 28 AAQDGMLDI------------LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA G + LR TK D + G T + AA +G++E L++L+
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Score = 27.8 bits (63), Expect = 0.21
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 49 DEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + A +++ ++ L+ G
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGG 28
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 40.2 bits (95), Expect = 9e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+C+A D TP AA + ++LL+ G
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Score = 38.2 bits (90), Expect = 4e-05
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA + I++ + D +AKD+ G+ P A G+ E LL+ G
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Score = 38.2 bits (90), Expect = 5e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA D G T AA G+L+ RLL+ G
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Score = 37.9 bits (89), Expect = 6e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA D TP AA + +E LL+ G
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Score = 37.1 bits (87), Expect = 1e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ N K++D MTP AA + + + + +L G
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Score = 34.0 bits (79), Expect = 0.001
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D + G + A E L
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180
Score = 33.6 bits (78), Expect = 0.002
Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEAL-RLLVGRG 75
E L AA GN E L LL
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48
Score = 29.0 bits (66), Expect = 0.10
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 5/37 (13%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGN 64
+ + D D L A+ G+
Sbjct: 320 GNEAVQQILSEST---PMRTSDVDY--RLLEASKAGD 351
Score = 28.6 bits (65), Expect = 0.14
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQG---NLEALRLLVGRG 75
AA++ L +++ A + + + T A + LL+ +G
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Score = 25.1 bits (56), Expect = 2.4
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D + G T EA++ ++
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSES 331
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 40.1 bits (95), Expect = 1e-05
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 27 RAAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR 74
RAA G L + L K N +D+ G TP A +G+ +A LLV +
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 39.7 bits (94), Expect = 1e-05
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 28 AAQDGMLDI----LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G L++ K D N G+T A + E + L+ G
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Score = 39.7 bits (94), Expect = 1e-05
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 28 AAQDGMLDILRE------ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + ++E + KD+DG P W+ E L+ +
Sbjct: 9 ACMENEFFKVQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Score = 38.2 bits (90), Expect = 5e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
KD+ P AA G+L+ + LL G G
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 33.6 bits (78), Expect = 0.002
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D+ G TP A GNLE ++ L R
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 27.8 bits (63), Expect = 0.24
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEAL 68
A +G D L E + + D G A + +
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A G + + +R D N + DG+T A N++ ++ LV G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
Score = 38.6 bits (91), Expect = 3e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A D +D+++ + + N D +G P AA G L+ L+ +G
Sbjct: 80 ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Score = 38.6 bits (91), Expect = 3e-05
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N KD DG TP AA G EA R+LV
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Score = 38.2 bits (90), Expect = 5e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + G T AA +G E L+LL+
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222
Score = 36.3 bits (85), Expect = 2e-04
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + +G TP A + E L+ V R
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Score = 34.8 bits (81), Expect = 8e-04
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
G L + K +DG L A G+ E + L+ RG
Sbjct: 15 KRWIGSETDLEPPVVKRKKTKVKFDDGAVF-LAACSSGDTEEVLRLLERG 63
Score = 28.2 bits (64), Expect = 0.16
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D + G+ L V +
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKR 31
Score = 25.5 bits (57), Expect = 1.7
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D A ++ G T A L +
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 39.9 bits (93), Expect = 1e-05
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D+D T WA G+ E + L+ G
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Score = 36.4 bits (84), Expect = 2e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N KD+ G +P AA G E ++ L+ +G
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Score = 28.3 bits (63), Expect = 0.16
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + ++ + + ++++ TP A G L + + G
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEG 226
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 40.2 bits (94), Expect = 1e-05
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
DG+L + + G+TP AA +G +E R ++ R
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
G L A C + G + A + +L+ ++LLV G
Sbjct: 68 IDKDSGNPKPLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113
Score = 30.5 bits (69), Expect = 0.027
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + + + + G L+ L
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTV 211
Score = 29.8 bits (67), Expect = 0.055
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 39 EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
++ G P AA + + L+
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159
Score = 27.4 bits (61), Expect = 0.29
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 31 DGMLDILREATKR---DCNAKDEDGMTPTLWAAF---QGNLEALRLLVGRG 75
G+L+ LR +K + G T + A G + L+
Sbjct: 19 TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 39.7 bits (94), Expect = 1e-05
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
KD +G T +WA L L+ +G
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Score = 39.3 bits (93), Expect = 1e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N +D TP + A G A+ LV
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENF 58
Score = 37.8 bits (89), Expect = 6e-05
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ N ++ +G TP + A+ G E ++ L+ G
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Score = 37.8 bits (89), Expect = 7e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ N KD G TP +W+ G E L+ G
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Score = 35.4 bits (83), Expect = 4e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
D +A+D G+T A G E +++
Sbjct: 159 DISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 23.9 bits (53), Expect = 6.5
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLV 72
+ D++G + + L L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLR 28
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 39.9 bits (94), Expect = 1e-05
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
++ +G D+++ D + +++G+T A G+ E ++ LV G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Score = 38.7 bits (91), Expect = 3e-05
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ NA D DG TP AA N++ + LV G
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 35.3 bits (82), Expect = 5e-04
Identities = 4/49 (8%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILREATKRDCNAK-DEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + E K + + L ++ +G + ++ ++
Sbjct: 12 GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60
Score = 33.4 bits (77), Expect = 0.003
Identities = 2/27 (7%), Positives = 5/27 (18%)
Query: 49 DEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ G + + G
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHG 28
Score = 30.3 bits (69), Expect = 0.034
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 5/53 (9%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA + + + A D +G + + L G
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Score = 27.6 bits (62), Expect = 0.28
Identities = 3/44 (6%), Positives = 11/44 (25%), Gaps = 8/44 (18%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLE 66
++G + + ++ + Q + E
Sbjct: 146 EMEEGYTQCSQFLYGVQE---KMGIMNKGVIYALWDYEPQNDDE 186
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 39.3 bits (93), Expect = 1e-05
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G LD + +A D N +D +G P AA +G+L + LV
Sbjct: 77 AARAGFLDTLQTLLEFQA---DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Score = 38.1 bits (90), Expect = 4e-05
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L + L + T + ++ G T A G E + L+ G
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 38.1 bits (90), Expect = 4e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + KD G AA G L+ L+ L+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Score = 37.4 bits (88), Expect = 7e-05
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ NA++ G T L GN E R L+ RG
Sbjct: 30 NVNAQNGFGRTA-LQVMKLGNPEIARRLLLRG 60
Score = 30.4 bits (70), Expect = 0.025
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 49 DEDGMTPTLWAAFQGNLEALRLLVGRG 75
E AA +G+LE L L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNN 28
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 39.6 bits (93), Expect = 2e-05
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + +DEDG TP + AA +G +E + L+ +G
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336
Score = 38.8 bits (91), Expect = 3e-05
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NA D D TP + A + L+ G
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 189
Score = 36.9 bits (86), Expect = 1e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEAL---RLLVGRG 75
AA + ++ K D D +GMT + A + + +LLV +G
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261
Score = 36.9 bits (86), Expect = 2e-04
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AAQ+G ++ I + A A D T A + + +
Sbjct: 320 AAQEGRIEVVMYLIQQGA---SVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369
Score = 36.1 bits (84), Expect = 3e-04
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 28 AAQDGMLDILREA-------------TKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
A + D + A +++ G T +AA N+ ++ LV
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299
Score = 36.1 bits (84), Expect = 3e-04
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
D ++ + AA + + ++
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYML 219
Score = 34.9 bits (81), Expect = 6e-04
Identities = 8/49 (16%), Positives = 11/49 (22%), Gaps = 7/49 (14%)
Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ DG + R N + P GN
Sbjct: 43 EASYDGYIKRQR-------NELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84
Score = 34.9 bits (81), Expect = 9e-04
Identities = 2/32 (6%), Positives = 6/32 (18%), Gaps = 1/32 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + L G+ +
Sbjct: 86 IPTEPEPESPIK-LHTEAAGSYAITEPITRES 116
Score = 29.5 bits (67), Expect = 0.062
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
+ T W A + E L+
Sbjct: 118 NII-DPRHNRTVLHWIASNSSAEKSEDLI 145
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA + D + D+ G T +A GN++ ++L V +
Sbjct: 69 AATLEDTKIVKILLFSGL---DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118
Score = 39.0 bits (92), Expect = 2e-05
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D D G + + +A N+ + L+ G
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG 54
Score = 39.0 bits (92), Expect = 3e-05
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTL-WAAFQGNLEALRLLVGRG 75
++G +D + N + P + A ++E L+ L
Sbjct: 168 TIKNGHVDMMILLLDYMT---STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218
Score = 37.1 bits (87), Expect = 1e-04
Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILRE-ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + I+ ++ ++ G+++ + LL+
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184
Score = 36.0 bits (84), Expect = 3e-04
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A D + ++ + P AA + + +++L+ G
Sbjct: 38 AIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85
Score = 34.4 bits (80), Expect = 0.001
Identities = 3/31 (9%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 46 NAKDEDG-MTPTLWAAFQGNLEALRLLVGRG 75
+ G T A ++ + +
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G LR + N D ++P A G+L +++L+ G
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Score = 37.9 bits (89), Expect = 7e-05
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G ++ + + + K TP A ++ L+ G
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Score = 37.5 bits (88), Expect = 1e-04
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
G+ + +P AA G+ +LR L+ +G
Sbjct: 40 RDFPGIRLL-----SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82
Score = 37.1 bits (87), Expect = 1e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N D TP A G+ + + LL+ G
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Score = 33.6 bits (78), Expect = 0.002
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D AK+ +G P + L L L G
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQL-FLEREG 277
Score = 32.8 bits (76), Expect = 0.004
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D +P AA +G++E + L+ G
Sbjct: 150 SVQPES-DLASPIHEAARRGHVECVNSLIAYG 180
Score = 32.1 bits (74), Expect = 0.008
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 48 KDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + +P + E LL+ G
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFG 245
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NA D+ G + WAA N++A +L+ G
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Score = 37.8 bits (89), Expect = 6e-05
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N D G T AA +A + L+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEAS 80
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A + L D +A+ DG TP + AA L L+
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147
Score = 36.3 bits (85), Expect = 2e-04
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + ++ TP AA +G+ E ++L+
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Score = 34.8 bits (81), Expect = 7e-04
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D P A + + + +RLL
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246
Score = 34.8 bits (81), Expect = 8e-04
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N +D G TP A ++L+
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Score = 29.7 bits (68), Expect = 0.050
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEA 67
D N + DG TP + A+ G
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLE 25
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 38.5 bits (91), Expect = 2e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NAKD MT WA + E + LL+ G
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Score = 35.8 bits (84), Expect = 2e-04
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+A+ + TP AA +G+ + +L+ G
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Score = 34.3 bits (80), Expect = 0.001
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
D + + + T + GN + +L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 32.0 bits (74), Expect = 0.007
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 47 AKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D G +P AA G+ +L+ G
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Score = 28.5 bits (65), Expect = 0.10
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
D L AA G + +R+L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANG 25
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 38.9 bits (92), Expect = 2e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA +G L+ + A D NA D GMTP AA G+LE + +L+ G
Sbjct: 54 AAFNGHLEIVEVLLKNGA---DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Score = 38.5 bits (91), Expect = 2e-05
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G L+ + A D NA D +G TP AA G+LE + +L+ G
Sbjct: 87 AALFGHLEIVEVLLKNGA---DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Score = 38.5 bits (91), Expect = 3e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NA+D G TP AAF G+LE + +L+ G
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Score = 37.0 bits (87), Expect = 1e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA G L+ + A D NA+D+ G T + GN + +L
Sbjct: 120 AAMFGHLEIVEVLLKNGA---DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 32.3 bits (75), Expect = 0.006
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D L AA G + +R+L+ G
Sbjct: 8 HHHGSDLGKKLLEAARAGRDDEVRILMANG 37
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 39.0 bits (92), Expect = 3e-05
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G LR + N D ++P A G+L +++L+ G
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Score = 37.8 bits (89), Expect = 7e-05
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G ++ + + + K TP A ++ L+ G
Sbjct: 108 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Score = 36.6 bits (86), Expect = 2e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N D TP A G+ + + LL+ G
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHG 92
Score = 32.8 bits (76), Expect = 0.005
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 48 KDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D +P AA +G++E + L+ G
Sbjct: 97 PESDLASPIHEAARRGHVECVNSLIAYG 124
Score = 32.4 bits (75), Expect = 0.005
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
+ + Q + + +L++
Sbjct: 222 PPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 32.0 bits (74), Expect = 0.008
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 48 KDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + +P A + E LL+ G
Sbjct: 162 QGKGQDSPLHAVARTASEELACLLMDFG 189
Score = 30.9 bits (71), Expect = 0.017
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D AK+ +G P + L +L + R
Sbjct: 191 DTQAKNAEGKRPVELVPPESPLA--QLFLERE 220
Score = 30.5 bits (70), Expect = 0.026
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
+P AA G+ +LR L+ +G
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQG 26
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A
1blx_B
Length = 156
Score = 38.2 bits (90), Expect = 3e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N +D G +P AA G L+ L++LV G
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Score = 37.8 bits (89), Expect = 4e-05
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 28 AAQDGMLDI----LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
A Q+G + E+ D + +D G+TP A +G + + +L
Sbjct: 108 AVQEGHTAVVSFLAAES---DLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 37.4 bits (88), Expect = 7e-05
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 28 AAQDGMLDILRE---ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G + +R +A + G T L G+ L+ +G
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQG 58
Score = 37.0 bits (87), Expect = 1e-04
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G LD L+ A D N D G P A +G+ + L
Sbjct: 75 AARTGFLDTLKVLVEHGA---DVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Score = 25.1 bits (56), Expect = 2.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 52 GMTPTLWAAFQGNLEALRLLVGRG 75
AA +G+++ +R L+ R
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRE 25
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 37.8 bits (89), Expect = 4e-05
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N +P AA G+++ ++LL+ G
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 37.8 bits (89), Expect = 4e-05
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G + + + D N KD G TP A G+L+ + LL+
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Score = 35.5 bits (83), Expect = 3e-04
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
NA + G+ P + + L L
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLP 128
Score = 34.3 bits (80), Expect = 7e-04
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 47 AKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ G T A+ +G++ ++ L+ G
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG 33
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 37.7 bits (89), Expect = 4e-05
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NA D G TP AAF G+LE +L+ G
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 36.6 bits (86), Expect = 1e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D NAKDE G+TP A G+LE + +L+ G
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Score = 35.4 bits (83), Expect = 3e-04
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
D NA+D+ G T + GN + +L
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 26.6 bits (60), Expect = 0.50
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D L AA G + +R+L+ G
Sbjct: 8 HHHGSDLGKKLLEAARAGQDDEVRILMANG 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 38.2 bits (90), Expect = 5e-05
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ + I A D NA D+ G + WAA N++A +L+ G
Sbjct: 99 AARLAVEGMLEDLINSHA---DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Score = 37.8 bits (89), Expect = 7e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +A+ DG TP + AA L L+
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSH 115
Score = 37.0 bits (87), Expect = 1e-04
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ ++ TP AA +G+ E ++L+
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHF 181
Score = 37.0 bits (87), Expect = 1e-04
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N D G T AA +A + L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEAS 48
Score = 36.2 bits (85), Expect = 3e-04
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N +D G TP A ++L+
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Score = 35.1 bits (82), Expect = 6e-04
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ D P A + + + +RLL
Sbjct: 185 DITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 38.1 bits (88), Expect = 7e-05
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA+D +G T AA GN+ + L+ G
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYG 306
Score = 36.9 bits (85), Expect = 2e-04
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 6 LLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREA---TKRDCNAK-DEDGMTPTLWAAF 61
L + + S + D +L + +A T+ + N DE G TP W
Sbjct: 81 SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTS 140
Query: 62 QGNLEALRLLVGRG 75
NLE ++ LV G
Sbjct: 141 IANLELVKHLVKHG 154
Score = 27.7 bits (61), Expect = 0.32
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 44 DCNAKDEDGMTPTLWAAFQGN 64
+ D G + + A N
Sbjct: 156 NRLYGDNMGESCLVKAVKSVN 176
Score = 23.4 bits (50), Expect = 9.8
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 44 DCNAKDEDGMTPTLWAA 60
D ++ G+ P + A
Sbjct: 308 DPFIANKSGLRPVDFGA 324
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction,
substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A
{Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A
3twx_A 3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 37.4 bits (88), Expect = 8e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G ++ L +C + TP +AA + + L+ G
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Score = 37.0 bits (87), Expect = 9e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N D TP AA +G E +LL+ G
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Score = 36.6 bits (86), Expect = 1e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D +AKD+ G+ P A G+ E LLV G
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Score = 33.1 bits (77), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D K+ DG TP L G+ + LL G
Sbjct: 133 DPTKKNRDGNTP-LDLVKDGDTDIQDLLRGDA 163
Score = 31.2 bits (72), Expect = 0.014
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 48 KDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + L AA G++E ++ L
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQ 31
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 37.3 bits (87), Expect = 9e-05
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
KD+ G+T + AL+++
Sbjct: 146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177
Score = 33.5 bits (77), Expect = 0.002
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 44 DCNAKDEDGMTPTLWAAFQGN------LEALRLLVGRG 75
D ++ ++G T G E ++ + +G
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104
Score = 33.5 bits (77), Expect = 0.002
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
D A + F ++ ++
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMI 133
Score = 30.4 bits (69), Expect = 0.032
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 5/53 (9%)
Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G + E ++ K + + L+ +G
Sbjct: 13 AAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Score = 26.9 bits (60), Expect = 0.51
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 47 AKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ AA G E L +G
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKG 29
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 37.6 bits (87), Expect = 1e-04
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 2/60 (3%)
Query: 18 NSSYLLLPPRAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ + LD L + + AA G+L L L
Sbjct: 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 151
Score = 34.5 bits (79), Expect = 0.001
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 28 AAQDGMLDI----LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++G L + A + AA G+L L L
Sbjct: 135 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186
Score = 33.8 bits (77), Expect = 0.002
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D A GN A LL+
Sbjct: 311 PTATIPGDANELLRLALRLGNQGACALLLSIP 342
>2rfa_A Transient receptor potential cation channel subfa member 6;
TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 37.2 bits (87), Expect = 1e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 27 RAAQDGMLDILRE------ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA++ + L + + + + G T AA NLEA +L+
Sbjct: 9 LAAKENDVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Score = 34.9 bits (81), Expect = 7e-04
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 42 KRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
++ +G T A N+ +R L+ RG
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Score = 31.4 bits (72), Expect = 0.012
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 42 KRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
K + G+TP A +GN+ + L+ +
Sbjct: 187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220
Score = 30.3 bits (69), Expect = 0.033
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLE 66
D A+D G T Q N
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKT 168
Score = 28.0 bits (63), Expect = 0.23
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 13/45 (28%)
Query: 44 DCNAKDED-------------GMTPTLWAAFQGNLEALRLLVGRG 75
+A+ G P +AA G+ E +RLL+ G
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 37.1 bits (86), Expect = 1e-04
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ G+TP AA G + L ++ R
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQRE 256
Score = 36.3 bits (84), Expect = 2e-04
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 34 LDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D L++ G T A + N+ + LLV G
Sbjct: 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124
Score = 32.1 bits (73), Expect = 0.008
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEA 67
AA L I++ D +A+D G T +
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199
Score = 29.4 bits (66), Expect = 0.061
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 42 KRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
K G P AA L ++ L+
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171
Score = 26.7 bits (59), Expect = 0.64
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLV 72
A Q N + L L+
Sbjct: 7 KPPRLYDRRSIFDAVAQSNCQELESLL 33
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 33.4 bits (76), Expect = 0.002
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 10 NRAYGPQANSSYLLLPPRAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEA 67
A G + + + L L R+ L I+ + + + G T + N E
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220
Query: 68 LRLLVGRG 75
L+LL+
Sbjct: 221 LKLLLRGK 228
Score = 24.6 bits (53), Expect = 4.1
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
L +L K +E G TP A + LL
Sbjct: 214 LTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLT 258
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 31.7 bits (72), Expect = 0.010
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 34 LDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+RE G T A + + LLV +G
Sbjct: 75 TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116
Score = 31.7 bits (72), Expect = 0.011
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 40 ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ DG++P + AA G + + ++ R
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248
Score = 29.4 bits (66), Expect = 0.060
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 35 DILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
R +D G P AA + L G
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163
Score = 25.1 bits (55), Expect = 2.1
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 5/42 (11%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGN 64
AA I+ + D +D G T +
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 31.1 bits (70), Expect = 0.019
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+AK DG T +AA + L+LL+
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.11
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 22 LLLP----PRAAQ--DGMLDILREATKRDCNAKDEDGMTPTLWAAFQG 63
LL+P A+Q + IL E T A DE L F G
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPT-EGFAADDEPTTPAELVGKFLG 66
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 28.3 bits (63), Expect = 0.18
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+AK DG T +AA + L+LL+
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 4.0
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 30 QDGMLDILREATKRDCNAKD-EDGMTPTL 57
+D +L + +A + + KD +D L
Sbjct: 19 KD-ILSVFEDAFVDNFDCKDVQDMPKSIL 46
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 23.6 bits (52), Expect = 8.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 27 RAAQDGMLDILREATKRDC 45
R A+ L ILRE DC
Sbjct: 132 RDARADTLAILREEKVTDC 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,132,821
Number of extensions: 54031
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 291
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.1 bits)